Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00303 * 2 1 4 4 H 1.07999 * 119.99927 * 202.34179 * 3 2 1 5 5 C 1.38806 * 119.99656 * 22.34790 * 3 2 1 6 6 N 1.31624 * 120.00059 * 11.34304 * 5 3 2 7 7 Si 1.86800 * 119.99909 * 191.34258 * 5 3 2 8 8 H 1.48495 * 109.47379 * 90.00155 * 7 5 3 9 9 H 1.48511 * 109.47104 * 209.99823 * 7 5 3 10 10 H 1.48500 * 109.47066 * 329.99686 * 7 5 3 11 11 C 1.46506 * 119.99696 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47030 * 270.00043 * 11 2 1 13 13 N 1.46498 * 109.47123 * 180.02562 * 12 11 2 14 14 C 1.34774 * 120.00152 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00079 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00115 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47086 * 179.97438 * 16 14 13 18 18 C 1.53777 * 113.61692 * 274.13542 * 17 16 14 19 19 C 1.53955 * 87.02125 * 220.05131 * 18 17 16 20 20 C 1.53002 * 113.53632 * 270.81064 * 19 18 17 21 21 C 1.52997 * 113.74473 * 139.94178 * 19 18 17 22 22 C 1.53782 * 87.11338 * 25.35914 * 19 18 17 23 23 H 1.08996 * 109.46954 * 274.21202 * 1 2 3 24 24 H 1.09003 * 109.46575 * 34.21046 * 1 2 3 25 25 H 1.09001 * 109.47311 * 154.20447 * 1 2 3 26 26 H 0.97005 * 119.99993 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.46542 * 150.00334 * 11 2 1 28 28 H 1.09000 * 109.47187 * 30.00128 * 11 2 1 29 29 H 1.08993 * 109.47379 * 60.00197 * 12 11 2 30 30 H 1.09000 * 109.47205 * 300.00074 * 12 11 2 31 31 H 0.97001 * 119.99860 * 0.02562 * 13 12 11 32 32 H 1.09002 * 109.47334 * 59.99594 * 16 14 13 33 33 H 1.09000 * 109.46796 * 299.99696 * 16 14 13 34 34 H 1.08999 * 112.84895 * 45.33061 * 17 16 14 35 35 H 1.09003 * 113.61076 * 334.56456 * 18 17 16 36 36 H 1.08992 * 113.61832 * 105.46753 * 18 17 16 37 37 H 1.08996 * 109.47502 * 157.49365 * 20 19 18 38 38 H 1.09002 * 109.47068 * 277.49706 * 20 19 18 39 39 H 1.09003 * 109.47056 * 37.49256 * 20 19 18 40 40 H 1.09000 * 109.47087 * 322.39755 * 21 19 18 41 41 H 1.08994 * 109.47041 * 82.40276 * 21 19 18 42 42 H 1.09004 * 109.46939 * 202.39755 * 21 19 18 43 43 H 1.08990 * 113.61808 * 220.09478 * 22 19 18 44 44 H 1.09001 * 113.61549 * 89.18634 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5339 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3368 4.0047 0.1689 8 1 1.8681 4.5632 -1.1247 9 1 1.9682 4.9302 1.2702 10 1 3.8124 3.8418 0.1321 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 7 3.1854 -2.9796 1.4412 14 6 3.5219 -3.5639 2.6081 15 8 3.2184 -3.0394 3.6586 16 6 4.2764 -4.8685 2.6075 17 6 4.5313 -5.3109 4.0498 18 6 5.8024 -4.7025 4.6653 19 6 6.0525 -6.0785 5.3090 20 6 5.4004 -6.2375 6.6839 21 6 7.5210 -6.5076 5.2947 22 6 5.2240 -6.6793 4.1612 23 1 -0.3633 0.0755 1.0249 24 1 -0.3632 0.8499 -0.5778 25 1 -0.3634 -0.9253 -0.4472 26 1 -0.0464 3.0775 1.4127 27 1 3.1499 -1.1382 -0.5143 28 1 1.6083 -2.0282 -0.5148 29 1 1.5001 -1.8417 1.9555 30 1 3.0415 -0.9517 1.9559 31 1 3.4284 -3.3989 0.6009 32 1 5.2291 -4.7370 2.0944 33 1 3.6882 -5.6281 2.0927 34 1 3.6500 -5.2147 4.6840 35 1 6.5541 -4.4228 3.9272 36 1 5.6022 -3.9114 5.3878 37 1 5.2640 -7.2968 6.9011 38 1 6.0413 -5.7903 7.4438 39 1 4.4314 -5.7384 6.6863 40 1 7.9830 -6.1909 4.3596 41 1 8.0427 -6.0453 6.1326 42 1 7.5834 -7.5923 5.3817 43 1 4.5574 -7.4817 4.4772 44 1 5.8171 -6.9410 3.2849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317457044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -35.193814 kcal Electronic energy + Delta-G solvation = -20451.730686 eV Core-core repulsion = 17403.908071 eV Total energy + Delta-G solvation = -3047.822614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19254 -39.92467 -37.83535 -35.65782 -33.46870 -33.02693 -30.25666 -28.46531 -28.24648 -27.90620 -26.56894 -25.01840 -22.47169 -22.23902 -20.87540 -19.17979 -18.81339 -17.94590 -17.05268 -16.70104 -16.68572 -16.01535 -15.54234 -15.40238 -15.10064 -14.96070 -14.68328 -14.37368 -14.14768 -13.88677 -13.55768 -13.16281 -13.07902 -12.82041 -12.78411 -12.65797 -12.64128 -12.47498 -12.25049 -12.09634 -12.02739 -11.77194 -11.67170 -11.42416 -10.98189 -10.86007 -10.71479 -10.66117 -10.02289 -8.88042 -7.86490 -5.36368 1.45493 1.46583 1.55544 1.75031 2.27048 2.52178 3.28935 3.57561 3.67050 3.75550 3.78818 3.88834 4.09734 4.23127 4.29859 4.38494 4.45024 4.62110 4.65804 4.73239 4.79952 4.82277 4.83025 4.91381 4.94053 5.02982 5.05465 5.06356 5.07428 5.17733 5.20736 5.30644 5.32331 5.36545 5.52263 5.61827 5.61983 5.70375 5.70891 6.29501 6.69612 7.11087 7.40329 7.82036 8.24339 9.17303 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.003123 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.035513 B = 8964.270668 C = 9308.840455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.267 1.267 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.714 5.714 14 C 0.498 3.502 15 O -0.597 6.597 16 C -0.118 4.118 17 C -0.100 4.100 18 C -0.133 4.133 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.112 4.112 23 H -0.003 1.003 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.417 0.583 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.270 -21.727 2.022 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.208 1.208 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.367 5.367 14 C 0.286 3.714 15 O -0.478 6.478 16 C -0.158 4.158 17 C -0.119 4.119 18 C -0.170 4.170 19 C -0.090 4.090 20 C -0.188 4.188 21 C -0.189 4.189 22 C -0.149 4.149 23 H 0.015 0.985 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.254 0.746 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.944 -21.215 2.788 24.505 hybrid contribution -0.157 1.509 0.135 1.523 sum 11.787 -19.706 2.923 23.148 Atomic orbital electron populations 1.20600 0.82477 0.96511 0.97428 1.44198 1.02386 1.01692 1.85666 1.19613 0.98384 0.86418 1.35239 0.90561 1.25893 0.98478 1.02264 0.98529 1.70259 1.19343 1.27555 1.41544 0.85188 0.78451 0.79469 0.76870 1.20778 1.22480 1.19186 1.21138 0.97108 0.87513 0.92205 1.21849 0.94039 0.84253 1.01048 1.45976 1.57692 1.23654 1.09396 1.21700 0.78931 0.87784 0.82951 1.90686 1.56760 1.66959 1.33365 1.21749 1.02009 0.92672 0.99334 1.22228 0.97403 0.97594 0.94629 1.23210 0.97630 0.96383 0.99823 1.21809 0.96386 0.95787 0.95014 1.21613 0.99786 1.02138 0.95242 1.21704 0.93630 1.01607 1.01945 1.23080 0.98106 0.94998 0.98688 0.98454 0.95907 0.94530 0.94291 0.91678 0.90661 0.95307 0.95713 0.74569 0.86297 0.85952 0.91244 0.89493 0.94354 0.91154 0.92531 0.93914 0.91999 0.93039 0.91531 0.90791 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.78 9.01 127.77 1.15 9.93 16 2 N -0.62 -31.05 2.93 -726.93 -2.13 -33.17 16 3 C -0.27 -14.75 9.67 84.03 0.81 -13.93 16 4 H 0.08 4.04 7.84 -2.91 -0.02 4.01 16 5 C -0.06 -3.25 5.13 84.86 0.44 -2.81 16 6 N -0.94 -57.34 10.58 21.65 0.23 -57.11 16 7 Si 0.97 45.90 29.57 68.60 2.03 47.93 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 C 0.15 5.63 5.82 86.38 0.50 6.13 16 12 C 0.12 4.61 6.00 86.38 0.52 5.13 16 13 N -0.71 -20.50 5.56 -463.08 -2.57 -23.07 16 14 C 0.50 15.15 7.83 87.66 0.69 15.84 16 15 O -0.60 -25.16 15.79 -3.02 -0.05 -25.20 16 16 C -0.12 -2.16 5.52 29.85 0.16 -2.00 16 17 C -0.10 -2.05 2.76 -10.27 -0.03 -2.08 16 18 C -0.13 -2.84 6.76 31.18 0.21 -2.63 16 19 C -0.09 -1.47 1.39 -51.60 -0.07 -1.54 16 20 C -0.13 -2.22 9.07 71.98 0.65 -1.57 16 21 C -0.13 -1.70 9.20 71.98 0.66 -1.04 16 22 C -0.11 -1.56 6.79 31.12 0.21 -1.35 16 23 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 24 H 0.02 1.22 7.19 -2.39 -0.02 1.20 16 25 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 26 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 27 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 28 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.42 8.10 8.47 -92.71 -0.79 7.32 16 32 H 0.12 1.57 7.87 -2.39 -0.02 1.55 16 33 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.85 7.25 -2.39 -0.02 1.83 16 35 H 0.09 1.66 7.75 -2.39 -0.02 1.64 16 36 H 0.04 1.03 8.10 -2.39 -0.02 1.02 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.04 0.87 7.34 -2.39 -0.02 0.85 16 40 H 0.06 0.73 7.96 -2.39 -0.02 0.71 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 44 H 0.10 1.04 8.06 -2.39 -0.02 1.02 16 Total: -1.00 -74.01 353.09 3.58 -70.42 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.17 Total: 12.12 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.91 Total: 8.08 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.47 Total: -113.35 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.01 3.58 -70.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317457044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.230 kcal (2) G-P(sol) polarization free energy of solvation -74.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds