Wall clock time and date at job start Mon Mar 30 2020 01:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48495 * 109.47174 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46887 * 119.99610 * 3 2 1 6 6 H 1.48499 * 109.47097 * 239.99506 * 3 2 1 7 7 C 1.38817 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99813 * 204.34230 * 7 2 1 9 9 N 1.36939 * 119.99799 * 24.34991 * 7 2 1 10 10 C 1.46921 * 120.63478 * 29.02224 * 9 7 2 11 11 C 1.53620 * 108.54459 * 126.37003 * 10 9 7 12 12 C 1.53040 * 109.24115 * 54.85330 * 11 10 9 13 13 N 1.46903 * 109.44861 * 178.49512 * 12 11 10 14 14 C 1.46898 * 111.00484 * 275.06502 * 13 12 11 15 15 C 1.52995 * 109.47212 * 275.00419 * 14 13 12 16 16 C 1.53004 * 109.47296 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47135 * 59.99463 * 16 15 14 18 18 O 1.42894 * 109.47233 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47213 * 300.00595 * 17 16 15 20 20 C 1.52999 * 109.46915 * 154.99700 * 14 13 12 21 21 C 1.53032 * 109.54249 * 298.51685 * 12 11 10 22 22 C 1.46928 * 120.62558 * 209.30706 * 9 7 2 23 23 H 0.97004 * 120.00190 * 185.76929 * 1 2 3 24 24 H 1.08997 * 109.58860 * 246.20396 * 10 9 7 25 25 H 1.09000 * 109.58298 * 6.62681 * 10 9 7 26 26 H 1.09002 * 109.63276 * 294.87153 * 11 10 9 27 27 H 1.08991 * 109.46303 * 174.74311 * 11 10 9 28 28 H 1.09006 * 109.45846 * 58.53425 * 12 11 10 29 29 H 1.00907 * 110.99317 * 151.11079 * 13 12 11 30 30 H 1.08998 * 109.46648 * 35.00189 * 14 13 12 31 31 H 1.09007 * 109.47274 * 299.99709 * 15 14 13 32 32 H 1.08997 * 109.47711 * 59.99390 * 15 14 13 33 33 H 1.08998 * 109.46626 * 299.99808 * 16 15 14 34 34 H 1.08993 * 109.47457 * 179.97438 * 16 15 14 35 35 H 1.09005 * 109.46611 * 60.00143 * 17 16 15 36 36 H 0.96697 * 113.99846 * 300.00143 * 18 17 16 37 37 H 1.09003 * 109.46720 * 300.00255 * 19 17 16 38 38 H 1.08995 * 109.47183 * 179.97438 * 19 17 16 39 39 H 1.08993 * 109.47315 * 300.00299 * 20 14 13 40 40 H 1.08998 * 109.47063 * 60.00743 * 20 14 13 41 41 H 1.09005 * 109.49773 * 301.40987 * 21 12 11 42 42 H 1.09002 * 109.52921 * 181.33025 * 21 12 11 43 43 H 1.08998 * 109.58838 * 353.37046 * 22 9 7 44 44 H 1.09000 * 109.58749 * 113.65490 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4168 -2.3356 -0.4879 10 6 0.3967 -2.2517 -1.5419 11 6 0.8146 -3.1699 -2.7005 12 6 1.0489 -4.5839 -2.1640 13 7 1.4138 -5.4740 -3.2742 14 6 0.2163 -5.9941 -3.9476 15 6 -0.2879 -7.2337 -3.2061 16 6 -1.5356 -7.7750 -3.9070 17 6 -1.1882 -8.1496 -5.3493 18 8 -2.3535 -8.6546 -6.0041 19 6 -0.6839 -6.9099 -6.0908 20 6 0.5644 -6.3687 -5.3896 21 6 2.1821 -4.5601 -1.1359 22 6 1.7838 -3.6581 0.0365 23 1 -0.4850 -0.8358 0.0844 24 1 -0.5659 -2.5744 -1.1453 25 1 0.3219 -1.2239 -1.8971 26 1 1.7333 -2.7952 -3.1517 27 1 0.0237 -3.1916 -3.4501 28 1 0.1370 -4.9486 -1.6910 29 1 2.0048 -6.2270 -2.9547 30 1 -0.5608 -5.2299 -3.9482 31 1 0.4893 -7.9980 -3.2054 32 1 -0.5358 -6.9668 -2.1787 33 1 -2.3126 -7.0106 -3.9073 34 1 -1.8946 -8.6584 -3.3790 35 1 -0.4111 -8.9140 -5.3490 36 1 -2.7287 -9.4423 -5.5872 37 1 -1.4609 -6.1455 -6.0910 38 1 -0.4360 -7.1769 -7.1181 39 1 0.9236 -5.4856 -5.9179 40 1 1.3415 -7.1330 -5.3890 41 1 3.0880 -4.1723 -1.6018 42 1 2.3647 -5.5710 -0.7714 43 1 2.6245 -3.5586 0.7231 44 1 0.9327 -4.0921 0.5614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322072407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:59 Heat of formation + Delta-G solvation = -54.429472 kcal Electronic energy + Delta-G solvation = -21486.138778 eV Core-core repulsion = 18437.482043 eV Total energy + Delta-G solvation = -3048.656735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.56321 -37.94448 -36.23131 -34.14830 -31.97934 -30.99641 -30.11400 -29.45824 -27.09890 -24.35401 -22.95892 -22.54740 -21.88734 -20.98631 -20.07118 -19.04900 -17.47708 -17.35088 -16.08692 -15.27584 -14.73698 -14.51609 -14.41214 -14.13702 -13.91568 -13.47864 -13.41808 -13.24118 -12.80927 -12.48290 -12.42008 -12.14866 -11.84513 -11.63572 -11.54373 -11.37561 -11.07799 -10.72228 -10.65133 -10.48404 -10.41437 -10.32776 -10.09432 -10.00550 -9.88465 -9.70338 -9.24285 -8.36172 -8.16573 -6.84844 -6.03614 -3.21362 3.51602 3.55529 3.73321 3.88783 4.26352 4.47189 4.56178 4.62487 4.90409 4.95777 5.03178 5.23202 5.25149 5.28259 5.30199 5.39381 5.45397 5.49193 5.65268 5.69695 5.80657 5.83115 5.84374 5.91698 5.98486 6.04127 6.17291 6.20893 6.24830 6.32023 6.50272 6.55462 6.58437 6.70285 6.87757 7.13662 7.20927 7.37231 7.38423 7.60148 8.04720 8.61129 9.15313 9.87944 10.33445 11.24365 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.003792 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.500203 B = 7382.725642 C = 7551.365863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.349 4.349 8 H 0.055 0.945 9 N -0.598 5.598 10 C 0.151 3.849 11 C -0.119 4.119 12 C 0.097 3.903 13 N -0.682 5.682 14 C 0.086 3.914 15 C -0.146 4.146 16 C -0.147 4.147 17 C 0.105 3.895 18 O -0.570 6.570 19 C -0.112 4.112 20 C -0.102 4.102 21 C -0.133 4.133 22 C 0.150 3.850 23 H 0.268 0.732 24 H 0.013 0.987 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.334 0.666 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.375 0.625 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -17.247 -8.972 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.226 4.226 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.479 4.479 8 H 0.072 0.928 9 N -0.322 5.322 10 C 0.025 3.975 11 C -0.159 4.159 12 C -0.012 4.012 13 N -0.311 5.311 14 C -0.025 4.025 15 C -0.185 4.185 16 C -0.185 4.185 17 C 0.046 3.954 18 O -0.376 6.376 19 C -0.150 4.150 20 C -0.140 4.140 21 C -0.172 4.172 22 C 0.023 3.977 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.152 0.848 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.222 0.778 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.969 -14.517 -9.858 17.574 hybrid contribution -0.242 -2.964 1.263 3.231 sum -1.211 -17.481 -8.595 19.517 Atomic orbital electron populations 1.70783 1.06604 1.30263 1.48001 1.25873 0.96545 1.01505 0.98683 0.83528 0.74781 0.76029 0.76198 1.21101 1.22022 1.22001 1.19970 0.97064 0.88350 1.42466 0.92767 1.44120 1.46886 1.01451 1.39777 1.21042 0.90259 0.98870 0.87342 1.22151 1.00970 0.94185 0.98601 1.21448 0.96593 0.93580 0.89544 1.60698 1.17236 1.22253 1.30957 1.21639 0.92659 0.94690 0.93495 1.22231 0.97545 0.98756 0.99960 1.22200 0.98766 1.01559 0.96008 1.21865 0.86716 0.95691 0.91124 1.86521 1.45232 1.48733 1.57067 1.21501 0.98068 0.96220 0.99229 1.21461 0.96333 1.01263 0.94981 1.22194 0.98604 0.98849 0.97589 1.20849 0.97412 0.86541 0.92918 0.92114 0.96909 0.90293 0.91757 0.93571 0.94715 0.84792 0.90277 0.91874 0.91685 0.90998 0.92009 0.92918 0.77791 0.91142 0.91247 0.90471 0.92007 0.91420 0.93498 0.92582 0.96962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 12.45 55.49 0.69 -27.06 16 2 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 3 Si 1.06 25.51 29.98 -169.99 -5.10 20.42 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.35 -9.90 9.48 -15.06 -0.14 -10.04 16 8 H 0.05 1.54 7.94 -52.49 -0.42 1.12 16 9 N -0.60 -15.23 2.83 -172.06 -0.49 -15.72 16 10 C 0.15 3.61 4.72 -3.49 -0.02 3.59 16 11 C -0.12 -2.34 5.59 -26.39 -0.15 -2.49 16 12 C 0.10 1.63 2.27 -67.67 -0.15 1.47 16 13 N -0.68 -9.40 6.06 -99.70 -0.60 -10.00 16 14 C 0.09 1.03 2.27 -67.72 -0.15 0.87 16 15 C -0.15 -1.51 5.16 -26.73 -0.14 -1.64 16 16 C -0.15 -1.37 5.55 -26.73 -0.15 -1.52 16 17 C 0.10 0.98 3.47 -26.73 -0.09 0.88 16 18 O -0.57 -5.50 13.32 -35.23 -0.47 -5.97 16 19 C -0.11 -1.13 5.57 -26.70 -0.15 -1.28 16 20 C -0.10 -1.08 5.53 -26.70 -0.15 -1.23 16 21 C -0.13 -2.31 5.36 -26.62 -0.14 -2.46 16 22 C 0.15 3.19 6.51 -3.71 -0.02 3.16 16 23 H 0.27 8.19 6.71 -40.82 -0.27 7.91 16 24 H 0.01 0.31 7.85 -51.93 -0.41 -0.09 16 25 H 0.08 2.12 6.38 -51.93 -0.33 1.79 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.05 0.84 7.41 -51.93 -0.38 0.46 16 28 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 29 H 0.33 4.15 8.07 -39.29 -0.32 3.83 16 30 H 0.08 1.09 7.10 -51.93 -0.37 0.72 16 31 H 0.06 0.60 8.13 -51.92 -0.42 0.17 16 32 H 0.06 0.75 7.42 -51.93 -0.39 0.36 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 2.04 9.08 45.56 0.41 2.45 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -31.08 332.80 -9.61 -40.69 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.12 Total: 4.08 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.54 Total: -11.45 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.40 Total: -52.78 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.47 Total: -5.97 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.10 Total: 20.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.08 -9.61 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322072407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.740 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds