Wall clock time and date at job start Mon Mar 30 2020 01:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48495 * 109.47174 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46887 * 119.99610 * 3 2 1 6 6 H 1.48499 * 109.47097 * 239.99506 * 3 2 1 7 7 C 1.38817 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99813 * 204.34230 * 7 2 1 9 9 N 1.36939 * 119.99799 * 24.34991 * 7 2 1 10 10 C 1.46921 * 120.63478 * 29.02224 * 9 7 2 11 11 C 1.53620 * 108.54459 * 126.37003 * 10 9 7 12 12 C 1.53040 * 109.24115 * 54.85330 * 11 10 9 13 13 N 1.46903 * 109.44861 * 178.49512 * 12 11 10 14 14 C 1.46898 * 111.00484 * 275.06502 * 13 12 11 15 15 C 1.52995 * 109.47212 * 275.00419 * 14 13 12 16 16 C 1.53004 * 109.47296 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47135 * 59.99463 * 16 15 14 18 18 O 1.42894 * 109.47233 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47213 * 300.00595 * 17 16 15 20 20 C 1.52999 * 109.46915 * 154.99700 * 14 13 12 21 21 C 1.53032 * 109.54249 * 298.51685 * 12 11 10 22 22 C 1.46928 * 120.62558 * 209.30706 * 9 7 2 23 23 H 0.97004 * 120.00190 * 185.76929 * 1 2 3 24 24 H 1.08997 * 109.58860 * 246.20396 * 10 9 7 25 25 H 1.09000 * 109.58298 * 6.62681 * 10 9 7 26 26 H 1.09002 * 109.63276 * 294.87153 * 11 10 9 27 27 H 1.08991 * 109.46303 * 174.74311 * 11 10 9 28 28 H 1.09006 * 109.45846 * 58.53425 * 12 11 10 29 29 H 1.00907 * 110.99317 * 151.11079 * 13 12 11 30 30 H 1.08998 * 109.46648 * 35.00189 * 14 13 12 31 31 H 1.09007 * 109.47274 * 299.99709 * 15 14 13 32 32 H 1.08997 * 109.47711 * 59.99390 * 15 14 13 33 33 H 1.08998 * 109.46626 * 299.99808 * 16 15 14 34 34 H 1.08993 * 109.47457 * 179.97438 * 16 15 14 35 35 H 1.09005 * 109.46611 * 60.00143 * 17 16 15 36 36 H 0.96697 * 113.99846 * 300.00143 * 18 17 16 37 37 H 1.09003 * 109.46720 * 300.00255 * 19 17 16 38 38 H 1.08995 * 109.47183 * 179.97438 * 19 17 16 39 39 H 1.08993 * 109.47315 * 300.00299 * 20 14 13 40 40 H 1.08998 * 109.47063 * 60.00743 * 20 14 13 41 41 H 1.09005 * 109.49773 * 301.40987 * 21 12 11 42 42 H 1.09002 * 109.52921 * 181.33025 * 21 12 11 43 43 H 1.08998 * 109.58838 * 353.37046 * 22 9 7 44 44 H 1.09000 * 109.58749 * 113.65490 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4168 -2.3356 -0.4879 10 6 0.3967 -2.2517 -1.5419 11 6 0.8146 -3.1699 -2.7005 12 6 1.0489 -4.5839 -2.1640 13 7 1.4138 -5.4740 -3.2742 14 6 0.2163 -5.9941 -3.9476 15 6 -0.2879 -7.2337 -3.2061 16 6 -1.5356 -7.7750 -3.9070 17 6 -1.1882 -8.1496 -5.3493 18 8 -2.3535 -8.6546 -6.0041 19 6 -0.6839 -6.9099 -6.0908 20 6 0.5644 -6.3687 -5.3896 21 6 2.1821 -4.5601 -1.1359 22 6 1.7838 -3.6581 0.0365 23 1 -0.4850 -0.8358 0.0844 24 1 -0.5659 -2.5744 -1.1453 25 1 0.3219 -1.2239 -1.8971 26 1 1.7333 -2.7952 -3.1517 27 1 0.0237 -3.1916 -3.4501 28 1 0.1370 -4.9486 -1.6910 29 1 2.0048 -6.2270 -2.9547 30 1 -0.5608 -5.2299 -3.9482 31 1 0.4893 -7.9980 -3.2054 32 1 -0.5358 -6.9668 -2.1787 33 1 -2.3126 -7.0106 -3.9073 34 1 -1.8946 -8.6584 -3.3790 35 1 -0.4111 -8.9140 -5.3490 36 1 -2.7287 -9.4423 -5.5872 37 1 -1.4609 -6.1455 -6.0910 38 1 -0.4360 -7.1769 -7.1181 39 1 0.9236 -5.4856 -5.9179 40 1 1.3415 -7.1330 -5.3890 41 1 3.0880 -4.1723 -1.6018 42 1 2.3647 -5.5710 -0.7714 43 1 2.6245 -3.5586 0.7231 44 1 0.9327 -4.0921 0.5614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322072407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:58 Heat of formation + Delta-G solvation = -76.511030 kcal Electronic energy + Delta-G solvation = -21487.096307 eV Core-core repulsion = 18437.482043 eV Total energy + Delta-G solvation = -3049.614263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55296 -39.33635 -37.36821 -35.57788 -33.61243 -31.86318 -31.74244 -31.05421 -28.32998 -26.23557 -24.14051 -23.74526 -23.35661 -22.22746 -21.04811 -20.63586 -19.38409 -18.18408 -17.07380 -16.56787 -16.13312 -16.04701 -15.53177 -15.38477 -15.38042 -15.15576 -14.87453 -14.40120 -14.16121 -13.86917 -13.49229 -13.25277 -13.17132 -13.03330 -12.69304 -12.56601 -12.42834 -12.20462 -12.08889 -12.02972 -11.92295 -11.75562 -11.50120 -11.35759 -11.20355 -11.12252 -10.74791 -10.48524 -9.31496 -8.95647 -8.26352 -5.43401 1.57487 1.65519 1.84370 2.65064 3.00992 3.21110 3.35952 3.54057 3.67415 3.75851 3.89556 3.97613 4.12517 4.19202 4.24290 4.34420 4.38785 4.41362 4.46108 4.49443 4.52658 4.68217 4.69852 4.82432 4.88175 4.94153 4.97921 5.03341 5.06687 5.08528 5.14078 5.18293 5.20392 5.25180 5.35135 5.40449 5.51989 5.82864 6.12637 6.37270 6.55916 6.88846 7.04869 7.76117 8.21437 8.98005 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.003792 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.500203 B = 7382.725642 C = 7551.365863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.076 4.076 3 Si 1.115 2.885 4 H -0.291 1.291 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.358 4.358 8 H 0.051 0.949 9 N -0.618 5.618 10 C 0.159 3.841 11 C -0.106 4.106 12 C 0.110 3.890 13 N -0.680 5.680 14 C 0.085 3.915 15 C -0.139 4.139 16 C -0.143 4.143 17 C 0.108 3.892 18 O -0.587 6.587 19 C -0.112 4.112 20 C -0.094 4.094 21 C -0.119 4.119 22 C 0.144 3.856 23 H 0.252 0.748 24 H 0.000 1.000 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.348 0.652 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.393 0.607 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -19.418 -9.590 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.272 4.272 3 Si 0.939 3.061 4 H -0.217 1.217 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.488 4.488 8 H 0.068 0.932 9 N -0.343 5.343 10 C 0.033 3.967 11 C -0.146 4.146 12 C 0.000 4.000 13 N -0.311 5.311 14 C -0.025 4.025 15 C -0.178 4.178 16 C -0.181 4.181 17 C 0.050 3.950 18 O -0.396 6.396 19 C -0.150 4.150 20 C -0.132 4.132 21 C -0.158 4.158 22 C 0.018 3.982 23 H 0.062 0.938 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.168 0.832 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.243 0.757 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.163 -16.753 -10.476 19.760 hybrid contribution -0.626 -2.357 1.456 2.841 sum -0.463 -19.111 -9.020 21.137 Atomic orbital electron populations 1.70905 1.07592 1.29309 1.50601 1.27266 0.96608 1.04951 0.98373 0.82857 0.73860 0.71984 0.77349 1.21712 1.19958 1.20632 1.20243 0.96983 0.89711 1.41851 0.93157 1.44373 1.47004 1.02391 1.40509 1.20857 0.89707 0.97728 0.88422 1.21934 1.00390 0.95327 0.96918 1.21145 0.96336 0.92356 0.90116 1.60546 1.18246 1.22795 1.29491 1.21652 0.91375 0.94918 0.94509 1.22143 0.98456 0.98213 0.99001 1.22160 0.97812 1.01758 0.96376 1.21822 0.87123 0.95567 0.90535 1.86480 1.45464 1.49968 1.57674 1.21483 0.97410 0.96440 0.99713 1.21360 0.96917 1.01252 0.93640 1.22013 0.98048 0.99765 0.95961 1.21028 0.97220 0.85383 0.94583 0.93773 0.98162 0.94051 0.93138 0.92532 0.94988 0.83205 0.92578 0.90005 0.92766 0.92731 0.90112 0.91248 0.75686 0.92724 0.90740 0.91621 0.90466 0.92318 0.89669 0.92884 0.96891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 12.45 21.65 0.27 -58.60 16 2 C -0.08 -4.42 4.69 84.86 0.40 -4.02 16 3 Si 1.12 51.96 29.98 68.60 2.06 54.01 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.36 -20.64 9.48 84.03 0.80 -19.84 16 8 H 0.05 2.88 7.94 -2.91 -0.02 2.86 16 9 N -0.62 -32.03 2.83 -698.28 -1.98 -34.01 16 10 C 0.16 7.86 4.72 86.51 0.41 8.27 16 11 C -0.11 -4.18 5.59 30.82 0.17 -4.01 16 12 C 0.11 3.54 2.27 44.94 0.10 3.64 16 13 N -0.68 -17.17 6.06 -469.35 -2.84 -20.01 16 14 C 0.09 1.90 2.27 44.91 0.10 2.00 16 15 C -0.14 -2.51 5.16 30.59 0.16 -2.35 16 16 C -0.14 -2.33 5.55 30.60 0.17 -2.16 16 17 C 0.11 1.73 3.47 30.60 0.11 1.84 16 18 O -0.59 -10.00 13.32 -148.98 -1.98 -11.99 16 19 C -0.11 -2.09 5.57 30.61 0.17 -1.92 16 20 C -0.09 -1.79 5.53 30.61 0.17 -1.62 16 21 C -0.12 -3.89 5.36 30.67 0.16 -3.73 16 22 C 0.14 6.05 6.51 86.36 0.56 6.61 16 23 H 0.25 16.12 6.71 -92.71 -0.62 15.49 16 24 H 0.00 0.02 7.85 -2.39 -0.02 0.00 16 25 H 0.04 2.32 6.38 -2.39 -0.02 2.31 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.09 7.41 -2.39 -0.02 2.07 16 28 H 0.03 1.07 7.11 -2.38 -0.02 1.05 16 29 H 0.35 7.38 8.07 -89.69 -0.72 6.66 16 30 H 0.06 1.52 7.10 -2.39 -0.02 1.50 16 31 H 0.08 1.21 8.13 -2.38 -0.02 1.19 16 32 H 0.05 1.12 7.42 -2.39 -0.02 1.10 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.39 3.24 9.08 -74.06 -0.67 2.56 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 43 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -68.49 332.80 -1.27 -69.76 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.28 Total: 18.12 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.48 Total: -17.29 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -4.55 Total: -112.62 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.98 Total: -11.99 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.06 Total: 54.01 kcal Total: -68.49 -1.27 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322072407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.749 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds