Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36929 * 120.00525 * 2 1 4 4 H 1.07999 * 120.00237 * 322.98584 * 3 2 1 5 5 C 1.38811 * 120.00255 * 142.98708 * 3 2 1 6 6 N 1.31613 * 120.00413 * 155.53911 * 5 3 2 7 7 Si 1.86807 * 119.99924 * 335.53730 * 5 3 2 8 8 H 1.48497 * 109.47122 * 95.35806 * 7 5 3 9 9 H 1.48499 * 109.47228 * 215.35920 * 7 5 3 10 10 H 1.48502 * 109.46940 * 335.35873 * 7 5 3 11 11 C 1.46502 * 119.99523 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47492 * 90.00144 * 11 2 1 13 13 C 1.52999 * 109.47270 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47235 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00001 * 270.27619 * 14 13 12 16 16 C 1.34780 * 119.99862 * 89.99674 * 14 13 12 17 17 O 1.21273 * 120.00206 * 0.02562 * 16 14 13 18 18 C 1.50706 * 119.99398 * 180.02562 * 16 14 13 19 19 C 1.53005 * 109.46644 * 181.63843 * 18 16 14 20 20 C 1.52997 * 115.54856 * 279.07314 * 19 18 16 21 21 C 1.52998 * 117.49791 * 133.36970 * 19 18 16 22 22 C 1.52997 * 117.49982 * 64.74285 * 19 18 16 23 23 H 1.08995 * 109.47176 * 265.18535 * 1 2 3 24 24 H 1.09009 * 109.46786 * 25.18180 * 1 2 3 25 25 H 1.09002 * 109.47409 * 145.17850 * 1 2 3 26 26 H 0.97001 * 120.00463 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47017 * 329.99605 * 11 2 1 28 28 H 1.09005 * 109.46967 * 210.00345 * 11 2 1 29 29 H 1.09001 * 109.46912 * 59.99640 * 12 11 2 30 30 H 1.08998 * 109.46569 * 299.99821 * 12 11 2 31 31 H 1.09000 * 109.47179 * 59.99498 * 13 12 11 32 32 H 1.09002 * 109.46714 * 299.99682 * 13 12 11 33 33 H 1.09002 * 109.46777 * 269.72635 * 15 14 13 34 34 H 1.09003 * 109.47019 * 29.71810 * 15 14 13 35 35 H 1.08992 * 109.47246 * 149.72526 * 15 14 13 36 36 H 1.08997 * 109.46996 * 301.63380 * 18 16 14 37 37 H 1.08997 * 109.46974 * 61.63762 * 18 16 14 38 38 H 1.09008 * 109.47386 * 56.89402 * 20 19 18 39 39 H 1.08995 * 109.47539 * 176.89686 * 20 19 18 40 40 H 1.09005 * 109.47551 * 296.89909 * 20 19 18 41 41 H 1.08996 * 117.49955 * 359.97438 * 21 19 18 42 42 H 1.09003 * 117.49914 * 145.01750 * 21 19 18 43 43 H 1.08996 * 117.49718 * 214.97467 * 22 19 18 44 44 H 1.08999 * 117.49965 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7731 2.0269 -0.5630 5 6 3.3281 1.3068 0.7237 6 7 4.2234 2.2074 0.3776 7 14 3.6431 0.1916 2.1888 8 1 4.4531 -0.9758 1.7572 9 1 4.3795 0.9452 3.2353 10 1 2.3472 -0.2812 2.7387 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2167 -3.0353 -1.4438 14 7 3.4604 -3.4580 -2.8251 15 6 2.4803 -4.2981 -3.5178 16 6 4.5836 -3.0692 -3.4606 17 8 5.3928 -2.3700 -2.8888 18 6 4.8339 -3.5036 -4.8818 19 6 6.1873 -2.9642 -5.3491 20 6 6.1927 -1.5052 -5.8096 21 6 7.1250 -3.9359 -6.0683 22 6 7.4387 -3.4858 -4.6400 23 1 -0.3633 -0.0863 1.0240 24 1 -0.3633 0.9301 -0.4373 25 1 -0.3634 -0.8436 -0.5868 26 1 5.0470 2.2917 0.8831 27 1 1.6082 -2.0286 0.5130 28 1 3.1498 -1.1388 0.5134 29 1 3.0415 -0.9501 -1.9567 30 1 1.5000 -1.8400 -1.9571 31 1 2.6272 -3.7949 -0.9303 32 1 4.1692 -2.9056 -0.9297 33 1 2.7199 -5.3484 -3.3513 34 1 1.4832 -4.0873 -3.1311 35 1 2.5086 -4.0839 -4.5861 36 1 4.8394 -4.5924 -4.9333 37 1 4.0454 -3.1133 -5.5252 38 1 5.8212 -0.8691 -5.0061 39 1 7.2097 -1.2090 -6.0667 40 1 5.5509 -1.3977 -6.6841 41 1 6.7779 -4.9596 -6.2082 42 1 7.7459 -3.5359 -6.8699 43 1 8.2660 -2.7897 -4.5020 44 1 7.2979 -4.2136 -3.8409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327240052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = 10.033409 kcal Electronic energy + Delta-G solvation = -21330.780027 eV Core-core repulsion = 18284.918612 eV Total energy + Delta-G solvation = -3045.861415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.98473 -37.74982 -36.26241 -35.21117 -32.08042 -31.21088 -29.51402 -28.08137 -27.01471 -26.13342 -24.91054 -22.44191 -22.00711 -20.57191 -19.71896 -18.44576 -16.90717 -16.63649 -15.89340 -15.76647 -15.24886 -14.88751 -14.34746 -14.08345 -13.51263 -13.38173 -13.21707 -13.06223 -12.73699 -12.65142 -12.32675 -12.25226 -12.06422 -11.97197 -11.67390 -11.51383 -11.25215 -11.20931 -11.00819 -10.74432 -10.36535 -10.35932 -10.25727 -9.83234 -9.67900 -9.44779 -9.33156 -8.47693 -8.38661 -6.74400 -5.92231 -3.30929 2.88259 3.12092 3.39292 3.52369 3.58189 3.80062 4.57522 4.61123 4.66888 4.76802 4.96990 4.99789 5.06695 5.11425 5.31433 5.37983 5.45792 5.47235 5.51675 5.57459 5.61514 5.83814 5.86994 5.91711 5.97407 5.98945 6.05503 6.12460 6.15825 6.21879 6.31796 6.38201 6.42721 6.59596 6.73364 6.78951 6.90411 7.15925 7.57675 8.13203 8.44602 8.45480 9.06684 9.79854 10.20553 11.23603 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.005083 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.295580 B = 5506.903251 C = 6117.083483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.612 5.612 3 C -0.274 4.274 4 H 0.076 0.924 5 C 0.040 3.960 6 N -0.895 5.895 7 Si 0.874 3.126 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.142 3.858 12 C -0.145 4.145 13 C 0.115 3.885 14 N -0.620 5.620 15 C 0.080 3.920 16 C 0.507 3.493 17 O -0.517 6.517 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.181 4.181 22 C -0.154 4.154 23 H 0.005 0.995 24 H 0.044 0.956 25 H 0.024 0.976 26 H 0.263 0.737 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -16.550 -12.248 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.336 5.336 3 C -0.402 4.402 4 H 0.094 0.906 5 C -0.162 4.162 6 N -0.536 5.536 7 Si 0.704 3.296 8 H -0.211 1.211 9 H -0.229 1.229 10 H -0.196 1.196 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.008 4.008 14 N -0.355 5.355 15 C -0.064 4.064 16 C 0.294 3.706 17 O -0.391 6.391 18 C -0.141 4.141 19 C -0.110 4.110 20 C -0.171 4.171 21 C -0.218 4.218 22 C -0.191 4.191 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.033 -16.057 -11.889 19.979 hybrid contribution 0.123 -0.652 0.820 1.055 sum 0.155 -16.709 -11.068 20.043 Atomic orbital electron populations 1.21051 0.84751 0.98906 0.97211 1.44025 1.00687 1.02078 1.86804 1.18745 1.05571 0.90661 1.25248 0.90604 1.25426 0.96565 0.96379 0.97781 1.69895 1.07495 1.36939 1.39240 0.86969 0.77838 0.80189 0.84635 1.21141 1.22872 1.19591 1.21059 0.96287 0.87586 0.93495 1.22448 0.99244 0.95879 1.00993 1.21562 1.01406 0.96653 0.81160 1.47965 1.20748 1.51961 1.14827 1.21744 0.93005 0.94113 0.97508 1.20614 0.81126 0.80416 0.88445 1.90762 1.44890 1.36056 1.67438 1.21233 0.97415 1.01522 0.93961 1.21052 0.90526 0.95401 1.04027 1.21303 1.01654 0.93106 1.01040 1.23156 1.03455 0.98964 0.96218 1.22865 0.98883 1.03079 0.94272 0.97695 0.93743 0.95692 0.92724 0.94614 0.92779 0.90808 0.93106 0.91334 0.90096 0.92980 0.90957 0.91312 0.89339 0.88649 0.91113 0.92578 0.92639 0.89142 0.88861 0.88776 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.61 10.70 59.84 0.64 3.25 16 2 N -0.61 -15.32 2.48 -181.12 -0.45 -15.77 16 3 C -0.27 -8.04 9.87 -15.06 -0.15 -8.19 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 5 C 0.04 1.19 5.27 -17.43 -0.09 1.10 16 6 N -0.90 -28.55 13.97 55.49 0.78 -27.77 16 7 Si 0.87 23.23 25.18 -169.99 -4.28 18.95 16 8 H -0.28 -7.37 6.64 56.52 0.38 -6.99 16 9 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 10 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.14 3.19 4.55 -4.04 -0.02 3.17 16 12 C -0.14 -2.86 5.86 -26.73 -0.16 -3.02 16 13 C 0.11 1.90 5.40 -4.04 -0.02 1.88 16 14 N -0.62 -8.82 2.87 -181.57 -0.52 -9.34 16 15 C 0.08 0.74 10.22 59.85 0.61 1.36 16 16 C 0.51 7.95 7.56 -10.98 -0.08 7.86 16 17 O -0.52 -10.59 14.60 5.56 0.08 -10.51 16 18 C -0.10 -1.15 4.17 -27.88 -0.12 -1.26 16 19 C -0.11 -1.32 1.60 -154.51 -0.25 -1.57 16 20 C -0.11 -1.44 9.67 37.16 0.36 -1.08 16 21 C -0.18 -1.76 9.90 -26.73 -0.26 -2.02 16 22 C -0.15 -1.90 9.03 -26.73 -0.24 -2.14 16 23 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 24 H 0.04 0.90 8.00 -51.92 -0.42 0.49 16 25 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 26 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 27 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.05 1.36 3.36 -51.93 -0.17 1.18 16 29 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.07 0.52 6.49 -51.93 -0.34 0.18 16 36 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 37 H 0.10 0.93 7.46 -51.93 -0.39 0.54 16 38 H 0.07 1.11 7.79 -51.92 -0.40 0.70 16 39 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -34.81 352.17 -6.86 -41.67 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.00 Total: -1.88 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 0.22 Total: -0.66 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.20 Total: -52.89 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.28 Total: 18.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.81 -6.86 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327240052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.707 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds