Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36929 * 120.00525 * 2 1 4 4 H 1.07999 * 120.00237 * 322.98584 * 3 2 1 5 5 C 1.38811 * 120.00255 * 142.98708 * 3 2 1 6 6 N 1.31613 * 120.00413 * 155.53911 * 5 3 2 7 7 Si 1.86807 * 119.99924 * 335.53730 * 5 3 2 8 8 H 1.48497 * 109.47122 * 95.35806 * 7 5 3 9 9 H 1.48499 * 109.47228 * 215.35920 * 7 5 3 10 10 H 1.48502 * 109.46940 * 335.35873 * 7 5 3 11 11 C 1.46502 * 119.99523 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47492 * 90.00144 * 11 2 1 13 13 C 1.52999 * 109.47270 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47235 * 179.97438 * 13 12 11 15 15 C 1.46500 * 120.00001 * 270.27619 * 14 13 12 16 16 C 1.34780 * 119.99862 * 89.99674 * 14 13 12 17 17 O 1.21273 * 120.00206 * 0.02562 * 16 14 13 18 18 C 1.50706 * 119.99398 * 180.02562 * 16 14 13 19 19 C 1.53005 * 109.46644 * 181.63843 * 18 16 14 20 20 C 1.52997 * 115.54856 * 279.07314 * 19 18 16 21 21 C 1.52998 * 117.49791 * 133.36970 * 19 18 16 22 22 C 1.52997 * 117.49982 * 64.74285 * 19 18 16 23 23 H 1.08995 * 109.47176 * 265.18535 * 1 2 3 24 24 H 1.09009 * 109.46786 * 25.18180 * 1 2 3 25 25 H 1.09002 * 109.47409 * 145.17850 * 1 2 3 26 26 H 0.97001 * 120.00463 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47017 * 329.99605 * 11 2 1 28 28 H 1.09005 * 109.46967 * 210.00345 * 11 2 1 29 29 H 1.09001 * 109.46912 * 59.99640 * 12 11 2 30 30 H 1.08998 * 109.46569 * 299.99821 * 12 11 2 31 31 H 1.09000 * 109.47179 * 59.99498 * 13 12 11 32 32 H 1.09002 * 109.46714 * 299.99682 * 13 12 11 33 33 H 1.09002 * 109.46777 * 269.72635 * 15 14 13 34 34 H 1.09003 * 109.47019 * 29.71810 * 15 14 13 35 35 H 1.08992 * 109.47246 * 149.72526 * 15 14 13 36 36 H 1.08997 * 109.46996 * 301.63380 * 18 16 14 37 37 H 1.08997 * 109.46974 * 61.63762 * 18 16 14 38 38 H 1.09008 * 109.47386 * 56.89402 * 20 19 18 39 39 H 1.08995 * 109.47539 * 176.89686 * 20 19 18 40 40 H 1.09005 * 109.47551 * 296.89909 * 20 19 18 41 41 H 1.08996 * 117.49955 * 359.97438 * 21 19 18 42 42 H 1.09003 * 117.49914 * 145.01750 * 21 19 18 43 43 H 1.08996 * 117.49718 * 214.97467 * 22 19 18 44 44 H 1.08999 * 117.49965 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7731 2.0269 -0.5630 5 6 3.3281 1.3068 0.7237 6 7 4.2234 2.2074 0.3776 7 14 3.6431 0.1916 2.1888 8 1 4.4531 -0.9758 1.7572 9 1 4.3795 0.9452 3.2353 10 1 2.3472 -0.2812 2.7387 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2167 -3.0353 -1.4438 14 7 3.4604 -3.4580 -2.8251 15 6 2.4803 -4.2981 -3.5178 16 6 4.5836 -3.0692 -3.4606 17 8 5.3928 -2.3700 -2.8888 18 6 4.8339 -3.5036 -4.8818 19 6 6.1873 -2.9642 -5.3491 20 6 6.1927 -1.5052 -5.8096 21 6 7.1250 -3.9359 -6.0683 22 6 7.4387 -3.4858 -4.6400 23 1 -0.3633 -0.0863 1.0240 24 1 -0.3633 0.9301 -0.4373 25 1 -0.3634 -0.8436 -0.5868 26 1 5.0470 2.2917 0.8831 27 1 1.6082 -2.0286 0.5130 28 1 3.1498 -1.1388 0.5134 29 1 3.0415 -0.9501 -1.9567 30 1 1.5000 -1.8400 -1.9571 31 1 2.6272 -3.7949 -0.9303 32 1 4.1692 -2.9056 -0.9297 33 1 2.7199 -5.3484 -3.3513 34 1 1.4832 -4.0873 -3.1311 35 1 2.5086 -4.0839 -4.5861 36 1 4.8394 -4.5924 -4.9333 37 1 4.0454 -3.1133 -5.5252 38 1 5.8212 -0.8691 -5.0061 39 1 7.2097 -1.2090 -6.0667 40 1 5.5509 -1.3977 -6.6841 41 1 6.7779 -4.9596 -6.2082 42 1 7.7459 -3.5359 -6.8699 43 1 8.2660 -2.7897 -4.5020 44 1 7.2979 -4.2136 -3.8409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327240052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -12.772175 kcal Electronic energy + Delta-G solvation = -21331.768951 eV Core-core repulsion = 18284.918612 eV Total energy + Delta-G solvation = -3046.850339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11627 -38.78552 -37.99520 -36.56283 -34.03384 -32.96031 -30.57093 -29.13607 -28.22075 -27.84347 -26.40838 -23.69716 -23.26616 -22.46673 -20.80669 -19.46722 -18.80267 -17.97257 -17.34267 -17.03504 -16.78013 -16.07965 -15.74606 -15.41825 -15.18470 -14.93682 -14.76001 -14.27238 -14.08074 -13.91584 -13.73734 -13.39018 -13.28362 -13.21119 -13.06299 -12.74180 -12.73329 -12.47381 -12.36427 -12.32857 -12.21214 -12.07420 -11.76280 -11.36727 -11.20851 -10.84296 -10.65890 -10.42236 -9.62452 -8.78901 -8.25817 -5.60702 1.26536 1.33810 1.46681 1.72624 2.06949 2.38742 2.89627 2.99163 3.44486 3.66993 3.76411 3.85000 4.01625 4.08348 4.19034 4.27353 4.36050 4.42935 4.54747 4.56639 4.62363 4.67318 4.72372 4.73382 4.80241 4.82918 4.93771 4.96321 4.97525 5.02180 5.05445 5.10534 5.14387 5.23657 5.27230 5.35264 5.40429 5.63643 5.89642 6.10485 6.49544 6.96221 7.31342 7.61190 8.01553 8.94312 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.005083 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.295580 B = 5506.903251 C = 6117.083483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.628 5.628 3 C -0.265 4.265 4 H 0.037 0.963 5 C -0.021 4.021 6 N -0.947 5.947 7 Si 0.943 3.057 8 H -0.280 1.280 9 H -0.305 1.305 10 H -0.251 1.251 11 C 0.135 3.865 12 C -0.127 4.127 13 C 0.121 3.879 14 N -0.621 5.621 15 C 0.071 3.929 16 C 0.494 3.506 17 O -0.581 6.581 18 C -0.091 4.091 19 C -0.129 4.129 20 C -0.112 4.112 21 C -0.142 4.142 22 C -0.180 4.180 23 H 0.018 0.982 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.261 0.739 27 H 0.078 0.922 28 H 0.024 0.976 29 H 0.015 0.985 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.026 0.974 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -20.603 -13.328 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.353 5.353 3 C -0.395 4.395 4 H 0.055 0.945 5 C -0.218 4.218 6 N -0.591 5.591 7 Si 0.771 3.229 8 H -0.207 1.207 9 H -0.233 1.233 10 H -0.175 1.175 11 C 0.010 3.990 12 C -0.168 4.168 13 C -0.003 4.003 14 N -0.354 5.354 15 C -0.070 4.070 16 C 0.284 3.716 17 O -0.460 6.460 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.169 4.169 21 C -0.178 4.178 22 C -0.217 4.217 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.094 -20.175 -12.989 24.086 hybrid contribution 0.678 0.636 1.060 1.411 sum -1.416 -19.538 -11.929 22.936 Atomic orbital electron populations 1.21195 0.81897 1.00335 0.98608 1.44210 1.02568 1.01393 1.87087 1.18668 1.05555 0.91569 1.23733 0.94523 1.26096 0.96589 0.98565 1.00513 1.70033 1.08307 1.40001 1.40756 0.85856 0.78383 0.78167 0.80483 1.20729 1.23321 1.17513 1.21191 0.95328 0.87415 0.95079 1.22191 0.99720 0.95987 0.98865 1.21354 0.99705 0.96122 0.83095 1.48099 1.21352 1.51850 1.14063 1.22112 0.92019 0.94553 0.98330 1.21550 0.80715 0.79363 0.90016 1.90741 1.47186 1.38968 1.69132 1.21281 0.97472 1.03500 0.90789 1.21174 0.91150 0.95489 1.05175 1.21265 1.02080 0.93371 1.00224 1.23232 1.00918 0.99440 0.94228 1.22824 0.99091 1.03491 0.96281 0.96371 0.94404 0.91835 0.92978 0.90371 0.95835 0.96608 0.90733 0.87119 0.93691 0.90341 0.89938 0.89170 0.85879 0.86518 0.95480 0.92252 0.90528 0.86512 0.87623 0.90367 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.81 10.70 127.77 1.37 6.17 16 2 N -0.63 -30.93 2.48 -726.94 -1.80 -32.73 16 3 C -0.27 -16.09 9.87 84.03 0.83 -15.26 16 4 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 5 C -0.02 -1.31 5.27 84.86 0.45 -0.86 16 6 N -0.95 -63.61 13.97 21.65 0.30 -63.31 16 7 Si 0.94 49.32 25.18 68.60 1.73 51.05 16 8 H -0.28 -14.32 6.64 99.48 0.66 -13.66 16 9 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 10 H -0.25 -12.21 7.11 99.48 0.71 -11.50 16 11 C 0.14 5.86 4.55 86.38 0.39 6.25 16 12 C -0.13 -4.92 5.86 30.59 0.18 -4.74 16 13 C 0.12 3.83 5.40 86.38 0.47 4.30 16 14 N -0.62 -16.40 2.87 -846.76 -2.43 -18.83 16 15 C 0.07 1.00 10.22 127.77 1.31 2.30 16 16 C 0.49 15.35 7.56 87.66 0.66 16.01 16 17 O -0.58 -25.26 14.60 -3.01 -0.04 -25.31 16 18 C -0.09 -1.84 4.17 29.85 0.12 -1.71 16 19 C -0.13 -2.98 1.60 -52.18 -0.08 -3.06 16 20 C -0.11 -2.89 9.67 71.98 0.70 -2.19 16 21 C -0.14 -2.34 9.90 30.60 0.30 -2.04 16 22 C -0.18 -4.44 9.03 30.60 0.28 -4.17 16 23 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.04 1.49 8.00 -2.38 -0.02 1.47 16 25 H 0.06 1.98 8.11 -2.39 -0.02 1.96 16 26 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 27 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 28 H 0.02 1.17 3.36 -2.38 -0.01 1.17 16 29 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.11 2.57 8.07 -2.39 -0.02 2.55 16 32 H 0.04 1.75 7.42 -2.39 -0.02 1.73 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.09 0.91 6.49 -2.39 -0.02 0.89 16 36 H 0.12 1.63 7.87 -2.39 -0.02 1.61 16 37 H 0.12 1.87 7.46 -2.39 -0.02 1.85 16 38 H 0.03 0.91 7.79 -2.38 -0.02 0.89 16 39 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 40 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.12 1.36 8.08 -2.39 -0.02 1.34 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -83.39 352.17 5.61 -77.78 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.89 Total: 10.36 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 6.97 Total: 1.00 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.93 Total: -114.87 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.31 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.73 Total: 51.05 kcal Total: -83.39 5.61 -77.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327240052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.003 kcal (2) G-P(sol) polarization free energy of solvation -83.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds