Wall clock time and date at job start Mon Mar 30 2020 01:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47209 * 2 1 4 4 C 1.50702 * 109.47152 * 120.00099 * 2 1 3 5 5 H 1.07995 * 119.99718 * 120.00555 * 4 2 1 6 6 C 1.37879 * 119.99859 * 300.00118 * 4 2 1 7 7 N 1.31519 * 119.99823 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47602 * 119.99816 * 8 6 4 11 11 H 1.48500 * 109.47217 * 239.99721 * 8 6 4 12 12 C 1.50701 * 109.47102 * 240.00067 * 2 1 3 13 13 O 1.20825 * 120.00071 * 239.99628 * 12 2 1 14 14 O 1.34232 * 119.99784 * 59.99842 * 12 2 1 15 15 C 1.45202 * 116.99450 * 179.97438 * 14 12 2 16 16 C 1.53006 * 109.46867 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.47192 * 305.00392 * 17 16 15 19 19 C 1.53000 * 109.47060 * 65.00062 * 17 16 15 20 20 C 1.53002 * 109.47379 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.46964 * 300.00319 * 20 19 17 22 22 C 1.53000 * 109.47333 * 59.99652 * 21 20 19 23 23 H 1.09002 * 109.47303 * 59.99741 * 22 21 20 24 24 C 1.53001 * 109.47333 * 180.02562 * 22 21 20 25 25 C 1.53001 * 109.47049 * 185.00237 * 17 16 15 26 26 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47467 * 299.99867 * 1 2 3 28 28 H 1.08996 * 109.47244 * 59.99894 * 1 2 3 29 29 H 0.97000 * 119.99202 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46860 * 60.00352 * 15 14 12 31 31 H 1.08993 * 109.47426 * 299.99714 * 15 14 12 32 32 H 1.09001 * 109.46801 * 300.00397 * 16 15 14 33 33 H 1.09001 * 109.46998 * 59.99993 * 16 15 14 34 34 H 1.09000 * 109.47227 * 300.00275 * 19 17 16 35 35 H 1.09006 * 109.46717 * 59.99823 * 19 17 16 36 36 H 1.08996 * 109.47485 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.46869 * 59.99496 * 20 19 17 38 38 H 1.09006 * 109.47074 * 300.00049 * 21 20 19 39 39 H 1.09004 * 109.47455 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.47252 * 180.02562 * 24 22 21 41 41 H 1.09000 * 109.46959 * 300.00160 * 24 22 21 42 42 H 1.08998 * 109.47250 * 60.00127 * 24 22 21 43 43 H 1.08998 * 109.47250 * 300.00119 * 25 17 16 44 44 H 1.08998 * 109.47252 * 60.00195 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6037 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5866 4.8165 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6927 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2276 -0.9857 -3.5896 16 6 1.7554 -0.3192 -4.8835 17 6 2.3025 -1.0929 -6.0847 18 1 3.3869 -1.1681 -6.0052 19 6 1.6943 -2.4966 -6.1072 20 6 2.2408 -3.2701 -7.3088 21 6 1.8732 -2.5343 -8.5990 22 6 2.4814 -1.1306 -8.5765 23 1 3.5660 -1.2057 -8.4974 24 6 2.1133 -0.3945 -9.8664 25 6 1.9354 -0.3573 -7.3751 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 0.7095 1.1617 3.4844 30 1 1.8642 -2.0128 -3.5568 31 1 3.3171 -0.9845 -3.5566 32 1 0.6659 -0.3207 -4.9162 33 1 2.1185 0.7080 -4.9165 34 1 1.9557 -3.0206 -5.1879 35 1 0.6097 -2.4214 -6.1866 36 1 1.8071 -4.2700 -7.3251 37 1 3.3253 -3.3452 -7.2298 38 1 0.7886 -2.4591 -8.6780 39 1 2.2629 -3.0851 -9.4551 40 1 2.5470 0.6053 -9.8506 41 1 2.5024 -0.9454 -10.7227 42 1 1.0288 -0.3193 -9.9450 43 1 0.8510 -0.2821 -7.4546 44 1 2.3688 0.6427 -7.3591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327995446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:14 Heat of formation + Delta-G solvation = -153.754581 kcal Electronic energy + Delta-G solvation = -20632.889575 eV Core-core repulsion = 17547.633029 eV Total energy + Delta-G solvation = -3085.256546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36257 -39.98729 -37.59525 -35.93203 -34.95432 -32.83954 -32.58401 -29.77554 -27.29867 -27.18924 -25.50423 -23.95419 -22.93718 -21.60802 -21.05275 -20.64384 -18.63344 -18.01048 -17.55945 -17.30855 -16.25876 -16.10944 -15.65097 -15.41426 -15.01048 -14.80824 -14.64852 -14.19484 -14.15113 -13.56060 -13.27854 -13.11243 -13.02162 -12.84169 -12.73802 -12.64678 -12.63057 -12.54487 -12.28668 -12.07218 -12.02338 -11.86975 -11.71915 -11.43596 -11.29560 -11.13810 -11.10823 -10.82900 -10.80104 -10.53865 -8.21303 -6.34608 1.39924 1.41858 1.43967 1.54991 1.91828 2.43531 3.08596 3.65439 3.71029 3.79949 3.96383 4.08907 4.19506 4.23229 4.31260 4.39189 4.50938 4.56637 4.61341 4.65401 4.67852 4.77325 4.84044 4.89163 4.89973 4.95964 5.00547 5.05290 5.08286 5.14192 5.20454 5.31056 5.33905 5.39194 5.41792 5.47257 5.48861 5.51869 5.65105 5.68975 5.87750 6.09465 6.72128 7.04784 7.34340 8.85511 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047204 B = 0.003065 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.021497 B = 9133.280000 C = 9433.722268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.051 0.949 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.272 1.272 12 C 0.471 3.529 13 O -0.546 6.546 14 O -0.364 6.364 15 C 0.056 3.944 16 C -0.104 4.104 17 C -0.078 4.078 18 H 0.070 0.930 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.092 4.092 23 H 0.067 0.933 24 C -0.145 4.145 25 C -0.104 4.104 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.269 0.731 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -2.472 -23.042 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.069 0.931 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.197 1.197 12 C 0.317 3.683 13 O -0.436 6.436 14 O -0.282 6.282 15 C -0.018 4.018 16 C -0.141 4.141 17 C -0.097 4.097 18 H 0.089 0.911 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.110 4.110 23 H 0.085 0.915 24 C -0.203 4.203 25 C -0.141 4.141 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.249 -2.649 -22.925 23.079 hybrid contribution 0.476 -0.537 1.068 1.287 sum 0.724 -3.186 -21.857 22.100 Atomic orbital electron populations 1.21558 0.94304 0.99889 1.02057 1.18691 0.95986 0.96132 0.86229 0.93141 1.21282 1.32588 1.13247 0.90563 0.92700 1.25655 0.94883 0.95671 1.01596 1.69970 1.36693 1.23373 1.24728 0.85403 0.78398 0.78499 0.78752 1.20184 1.19775 1.19686 1.24861 0.75976 0.82509 0.84978 1.90468 1.37620 1.27932 1.87533 1.86550 1.70099 1.56149 1.15354 1.23294 0.98582 0.95873 0.84028 1.21597 1.02168 1.00122 0.90223 1.21057 1.00254 0.94800 0.93541 0.91139 1.21698 1.00702 0.95262 0.98285 1.21523 1.00867 0.98743 0.94459 1.21589 1.00843 0.95295 0.97140 1.21123 1.00124 0.94990 0.94797 0.91488 1.21808 1.01637 1.00211 0.96599 1.21587 1.01379 0.98576 0.92569 0.95275 0.90305 0.93212 0.92210 0.91948 0.92340 0.90501 0.90338 0.93141 0.91627 0.91674 0.92176 0.91911 0.91370 0.92523 0.92229 0.92575 0.91570 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.90 71.98 0.64 -5.15 16 2 C 0.05 2.56 2.74 -12.29 -0.03 2.53 16 3 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 4 C -0.54 -31.27 8.37 25.60 0.21 -31.05 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -50.96 11.32 21.45 0.24 -50.72 16 8 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.47 23.06 7.25 71.24 0.52 23.57 16 13 O -0.55 -29.14 15.21 21.97 0.33 -28.81 16 14 O -0.36 -14.83 10.12 -51.44 -0.52 -15.36 16 15 C 0.06 1.79 5.22 71.98 0.38 2.17 16 16 C -0.10 -2.42 5.06 30.60 0.15 -2.27 16 17 C -0.08 -1.47 2.19 -10.79 -0.02 -1.49 16 18 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 19 C -0.12 -2.32 4.96 30.60 0.15 -2.17 16 20 C -0.12 -1.88 5.92 30.60 0.18 -1.69 16 21 C -0.11 -1.50 5.20 30.59 0.16 -1.34 16 22 C -0.09 -1.25 2.72 -10.81 -0.03 -1.27 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 C -0.15 -1.67 9.19 71.98 0.66 -1.00 16 25 C -0.10 -1.60 4.48 30.58 0.14 -1.46 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 4.07 6.07 -2.39 -0.01 4.06 16 28 H 0.05 2.08 8.11 -2.39 -0.02 2.06 16 29 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.06 2.03 6.56 -2.39 -0.02 2.01 16 31 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.11 6.56 -2.39 -0.02 1.09 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -62.72 345.81 6.57 -56.15 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.94 Total: 11.34 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.56 Total: -18.97 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.24 Total: -50.72 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.19 Total: -44.16 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.72 6.57 -56.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.603 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds