Wall clock time and date at job start Mon Mar 30 2020 01:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47784 * 2 1 4 4 C 1.50693 * 109.47240 * 239.99225 * 2 1 3 5 5 H 1.08006 * 120.00291 * 335.19046 * 4 2 1 6 6 C 1.37877 * 120.00324 * 155.18542 * 4 2 1 7 7 N 1.31519 * 119.99918 * 355.67555 * 6 4 2 8 8 Si 1.86796 * 120.00125 * 175.39460 * 6 4 2 9 9 H 1.48506 * 109.47046 * 90.00655 * 8 6 4 10 10 H 1.48505 * 109.47105 * 210.00188 * 8 6 4 11 11 H 1.48501 * 109.47580 * 330.00149 * 8 6 4 12 12 C 1.50710 * 109.46638 * 119.99543 * 2 1 3 13 13 O 1.20828 * 119.99688 * 120.00204 * 12 2 1 14 14 O 1.34225 * 120.00161 * 299.99224 * 12 2 1 15 15 C 1.45195 * 117.00302 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47460 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47154 * 180.02562 * 16 15 14 18 18 H 1.08993 * 109.47090 * 305.00025 * 17 16 15 19 19 C 1.53003 * 109.47049 * 64.99804 * 17 16 15 20 20 C 1.53000 * 109.47049 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47157 * 299.99995 * 20 19 17 22 22 C 1.52994 * 109.47220 * 59.99889 * 21 20 19 23 23 H 1.09000 * 109.47164 * 59.99917 * 22 21 20 24 24 C 1.53007 * 109.47373 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47188 * 184.99404 * 17 16 15 26 26 H 1.08985 * 109.47607 * 175.17774 * 1 2 3 27 27 H 1.09007 * 109.47146 * 295.18466 * 1 2 3 28 28 H 1.09003 * 109.46436 * 55.17521 * 1 2 3 29 29 H 0.97001 * 119.99305 * 5.14396 * 7 6 4 30 30 H 1.09008 * 109.47143 * 300.01015 * 15 14 12 31 31 H 1.09003 * 109.47119 * 60.00307 * 15 14 12 32 32 H 1.09000 * 109.46824 * 299.99739 * 16 15 14 33 33 H 1.09003 * 109.47318 * 59.99676 * 16 15 14 34 34 H 1.08998 * 109.47253 * 299.99870 * 19 17 16 35 35 H 1.09000 * 109.47344 * 60.00150 * 19 17 16 36 36 H 1.09003 * 109.47277 * 179.97438 * 20 19 17 37 37 H 1.09000 * 109.46925 * 59.99893 * 20 19 17 38 38 H 1.09005 * 109.46966 * 300.00238 * 21 20 19 39 39 H 1.09000 * 109.47544 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47381 * 180.02562 * 24 22 21 41 41 H 1.09007 * 109.46506 * 299.99801 * 24 22 21 42 42 H 1.08996 * 109.46911 * 59.99612 * 24 22 21 43 43 H 1.09005 * 109.47273 * 300.00444 * 25 17 16 44 44 H 1.09003 * 109.46759 * 59.99992 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 1.4119 -1.4466 -1.7200 6 6 3.2839 -0.4210 -1.7309 7 7 4.0050 0.5347 -1.1865 8 14 3.9587 -1.3913 -3.1775 9 1 3.5698 -0.7239 -4.4458 10 1 5.4395 -1.4530 -3.0845 11 1 3.4034 -2.7684 -3.1522 12 6 2.0322 -0.7104 1.2306 13 8 2.7269 -1.6928 1.1198 14 8 1.7080 -0.2516 2.4497 15 6 2.2275 -0.9854 3.5898 16 6 1.7555 -0.3187 4.8835 17 6 2.3035 -1.0916 6.0849 18 1 2.0143 -2.1395 6.0053 19 6 3.8295 -0.9841 6.1075 20 6 4.3775 -1.7575 7.3085 21 6 3.8055 -1.1676 8.5991 22 6 2.2795 -1.2751 8.5765 23 1 1.9902 -2.3230 8.4965 24 6 1.7074 -0.6846 9.8669 25 6 1.7315 -0.5011 7.3752 26 1 -0.3634 -1.0239 -0.0864 27 1 -0.3634 0.4373 0.9300 28 1 -0.3632 0.5869 -0.8437 29 1 3.6892 0.9852 -0.3876 30 1 1.8641 -2.0126 3.5571 31 1 3.3170 -0.9844 3.5568 32 1 2.1188 0.7084 4.9164 33 1 0.6660 -0.3200 4.9164 34 1 4.2371 -1.4047 5.1883 35 1 4.1188 0.0639 6.1870 36 1 5.4648 -1.6812 7.3244 37 1 4.0883 -2.8053 7.2285 38 1 4.0947 -0.1196 8.6790 39 1 4.1955 -1.7188 9.4548 40 1 0.6202 -0.7616 9.8509 41 1 2.0978 -1.2354 10.7227 42 1 1.9967 0.3632 9.9464 43 1 2.0207 0.5469 7.4547 44 1 0.6442 -0.5777 7.3590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327995448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:17 Heat of formation + Delta-G solvation = -144.763617 kcal Electronic energy + Delta-G solvation = -20853.499641 eV Core-core repulsion = 17768.632972 eV Total energy + Delta-G solvation = -3084.866669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55725 -38.99683 -35.80956 -33.92990 -33.87651 -32.00707 -30.89576 -28.68638 -26.51940 -24.70272 -24.00335 -22.45989 -22.17801 -20.20691 -20.01058 -19.71672 -16.86401 -16.47551 -15.86323 -15.38819 -15.13822 -14.71498 -14.51380 -14.05317 -13.79978 -13.74899 -13.56037 -12.96483 -12.63321 -12.56233 -12.13446 -12.02049 -11.88003 -11.67626 -11.43071 -11.21737 -11.12101 -11.06604 -10.93205 -10.82945 -10.72164 -10.53842 -10.20346 -10.13887 -10.09296 -9.86781 -9.70079 -9.05855 -8.78388 -8.39128 -6.47656 -4.20798 3.39411 3.48493 3.55234 3.64596 3.67632 4.47144 4.49505 4.53562 4.56421 4.88418 4.96181 5.14752 5.18198 5.25921 5.32524 5.35983 5.39591 5.45409 5.49812 5.59189 5.63286 5.69892 5.71998 5.82871 5.86642 5.93611 5.99531 6.06207 6.11808 6.15424 6.20256 6.23822 6.25506 6.32840 6.39219 6.42074 6.59182 6.99978 7.10772 7.49282 7.94802 8.32225 8.71691 9.12450 9.52123 10.90276 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.003494 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.665117 B = 8012.574539 C = 8536.830321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 1.077 2.923 9 H -0.286 1.286 10 H -0.283 1.283 11 H -0.286 1.286 12 C 0.444 3.556 13 O -0.504 6.504 14 O -0.376 6.376 15 C 0.061 3.939 16 C -0.112 4.112 17 C -0.083 4.083 18 H 0.071 0.929 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.093 4.093 23 H 0.068 0.932 24 C -0.147 4.147 25 C -0.107 4.107 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -1.347 19.338 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.613 4.613 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.532 5.532 8 Si 0.904 3.096 9 H -0.213 1.213 10 H -0.209 1.209 11 H -0.212 1.212 12 C 0.287 3.713 13 O -0.389 6.389 14 O -0.295 6.295 15 C -0.014 4.014 16 C -0.150 4.150 17 C -0.102 4.102 18 H 0.089 0.911 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.111 4.111 23 H 0.087 0.913 24 C -0.204 4.204 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.169 -1.767 18.291 18.504 hybrid contribution -1.089 -0.146 1.245 1.660 sum -3.257 -1.913 19.536 19.898 Atomic orbital electron populations 1.21616 0.95596 1.00793 1.00147 1.18986 0.93811 0.97848 0.87992 0.91555 1.21715 1.03901 1.26230 1.09407 0.92342 1.25986 0.93496 0.95690 1.02527 1.70803 1.40724 1.20714 1.20948 0.83443 0.76332 0.75479 0.74327 1.21257 1.20877 1.21180 1.26437 0.77302 0.83987 0.83578 1.90483 1.35299 1.26486 1.86669 1.86632 1.70732 1.56441 1.15702 1.22857 0.98804 0.95286 0.84416 1.21578 1.01375 1.00125 0.91883 1.21089 0.95393 0.99942 0.93781 0.91062 1.21694 0.94972 1.00839 0.98328 1.21533 0.99896 0.99703 0.94585 1.21598 0.94954 1.01114 0.97445 1.21151 0.95325 0.99950 0.94709 0.91322 1.21833 1.00695 1.00901 0.97020 1.21632 0.99901 0.99643 0.93249 0.93753 0.94092 0.92395 0.92173 0.92502 0.92009 0.91043 0.91121 0.91513 0.91765 0.92051 0.92075 0.92030 0.92325 0.92755 0.92895 0.92736 0.91797 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.13 37.16 0.34 -2.28 16 2 C 0.03 0.85 2.45 -92.92 -0.23 0.63 16 3 H 0.07 1.76 6.69 -51.93 -0.35 1.41 16 4 C -0.58 -16.43 7.55 -34.44 -0.26 -16.69 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.03 0.85 5.46 -17.82 -0.10 0.75 16 7 N -0.90 -27.35 13.62 55.43 0.76 -26.59 16 8 Si 1.08 25.92 29.91 -169.99 -5.08 20.84 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.44 11.36 7.25 36.01 0.26 11.62 16 13 O -0.50 -14.38 15.78 -18.75 -0.30 -14.68 16 14 O -0.38 -8.17 10.03 -39.25 -0.39 -8.56 16 15 C 0.06 1.08 5.22 37.16 0.19 1.27 16 16 C -0.11 -1.50 5.06 -26.73 -0.14 -1.63 16 17 C -0.08 -0.92 2.19 -90.62 -0.20 -1.12 16 18 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.12 -1.35 4.96 -26.73 -0.13 -1.49 16 20 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 21 C -0.11 -0.96 5.20 -26.74 -0.14 -1.10 16 22 C -0.09 -0.78 2.72 -90.59 -0.25 -1.03 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 25 C -0.11 -1.00 4.49 -26.71 -0.12 -1.12 16 26 H 0.04 0.92 8.14 -51.94 -0.42 0.49 16 27 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.27 8.10 6.67 -40.82 -0.27 7.83 16 30 H 0.06 1.01 8.13 -51.92 -0.42 0.59 16 31 H 0.06 1.14 6.56 -51.93 -0.34 0.80 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.85 6.56 -51.93 -0.34 0.51 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -31.85 348.16 -8.46 -40.31 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.11 Total: -2.35 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.58 Total: -14.21 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.76 Total: -26.59 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.69 Total: -23.24 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.85 -8.46 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.452 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds