Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47784 * 2 1 4 4 C 1.50693 * 109.47240 * 239.99225 * 2 1 3 5 5 H 1.08006 * 120.00291 * 335.19046 * 4 2 1 6 6 C 1.37877 * 120.00324 * 155.18542 * 4 2 1 7 7 N 1.31519 * 119.99918 * 355.67555 * 6 4 2 8 8 Si 1.86796 * 120.00125 * 175.39460 * 6 4 2 9 9 H 1.48506 * 109.47046 * 90.00655 * 8 6 4 10 10 H 1.48505 * 109.47105 * 210.00188 * 8 6 4 11 11 H 1.48501 * 109.47580 * 330.00149 * 8 6 4 12 12 C 1.50710 * 109.46638 * 119.99543 * 2 1 3 13 13 O 1.20828 * 119.99688 * 120.00204 * 12 2 1 14 14 O 1.34225 * 120.00161 * 299.99224 * 12 2 1 15 15 C 1.45195 * 117.00302 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47460 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47154 * 180.02562 * 16 15 14 18 18 H 1.08993 * 109.47090 * 305.00025 * 17 16 15 19 19 C 1.53003 * 109.47049 * 64.99804 * 17 16 15 20 20 C 1.53000 * 109.47049 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47157 * 299.99995 * 20 19 17 22 22 C 1.52994 * 109.47220 * 59.99889 * 21 20 19 23 23 H 1.09000 * 109.47164 * 59.99917 * 22 21 20 24 24 C 1.53007 * 109.47373 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47188 * 184.99404 * 17 16 15 26 26 H 1.08985 * 109.47607 * 175.17774 * 1 2 3 27 27 H 1.09007 * 109.47146 * 295.18466 * 1 2 3 28 28 H 1.09003 * 109.46436 * 55.17521 * 1 2 3 29 29 H 0.97001 * 119.99305 * 5.14396 * 7 6 4 30 30 H 1.09008 * 109.47143 * 300.01015 * 15 14 12 31 31 H 1.09003 * 109.47119 * 60.00307 * 15 14 12 32 32 H 1.09000 * 109.46824 * 299.99739 * 16 15 14 33 33 H 1.09003 * 109.47318 * 59.99676 * 16 15 14 34 34 H 1.08998 * 109.47253 * 299.99870 * 19 17 16 35 35 H 1.09000 * 109.47344 * 60.00150 * 19 17 16 36 36 H 1.09003 * 109.47277 * 179.97438 * 20 19 17 37 37 H 1.09000 * 109.46925 * 59.99893 * 20 19 17 38 38 H 1.09005 * 109.46966 * 300.00238 * 21 20 19 39 39 H 1.09000 * 109.47544 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47381 * 180.02562 * 24 22 21 41 41 H 1.09007 * 109.46506 * 299.99801 * 24 22 21 42 42 H 1.08996 * 109.46911 * 59.99612 * 24 22 21 43 43 H 1.09005 * 109.47273 * 300.00444 * 25 17 16 44 44 H 1.09003 * 109.46759 * 59.99992 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 1.4119 -1.4466 -1.7200 6 6 3.2839 -0.4210 -1.7309 7 7 4.0050 0.5347 -1.1865 8 14 3.9587 -1.3913 -3.1775 9 1 3.5698 -0.7239 -4.4458 10 1 5.4395 -1.4530 -3.0845 11 1 3.4034 -2.7684 -3.1522 12 6 2.0322 -0.7104 1.2306 13 8 2.7269 -1.6928 1.1198 14 8 1.7080 -0.2516 2.4497 15 6 2.2275 -0.9854 3.5898 16 6 1.7555 -0.3187 4.8835 17 6 2.3035 -1.0916 6.0849 18 1 2.0143 -2.1395 6.0053 19 6 3.8295 -0.9841 6.1075 20 6 4.3775 -1.7575 7.3085 21 6 3.8055 -1.1676 8.5991 22 6 2.2795 -1.2751 8.5765 23 1 1.9902 -2.3230 8.4965 24 6 1.7074 -0.6846 9.8669 25 6 1.7315 -0.5011 7.3752 26 1 -0.3634 -1.0239 -0.0864 27 1 -0.3634 0.4373 0.9300 28 1 -0.3632 0.5869 -0.8437 29 1 3.6892 0.9852 -0.3876 30 1 1.8641 -2.0126 3.5571 31 1 3.3170 -0.9844 3.5568 32 1 2.1188 0.7084 4.9164 33 1 0.6660 -0.3200 4.9164 34 1 4.2371 -1.4047 5.1883 35 1 4.1188 0.0639 6.1870 36 1 5.4648 -1.6812 7.3244 37 1 4.0883 -2.8053 7.2285 38 1 4.0947 -0.1196 8.6790 39 1 4.1955 -1.7188 9.4548 40 1 0.6202 -0.7616 9.8509 41 1 2.0978 -1.2354 10.7227 42 1 1.9967 0.3632 9.9464 43 1 2.0207 0.5469 7.4547 44 1 0.6442 -0.5777 7.3590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327995448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = -160.379415 kcal Electronic energy + Delta-G solvation = -20854.176793 eV Core-core repulsion = 17768.632972 eV Total energy + Delta-G solvation = -3085.543821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32561 -40.02027 -37.60908 -35.98828 -34.98583 -32.98494 -32.73138 -29.82830 -27.22334 -26.77811 -25.58337 -24.02667 -22.97808 -21.79496 -21.12641 -20.68186 -18.97844 -18.39708 -17.55661 -16.86610 -16.18166 -16.04374 -15.68887 -15.54322 -15.30113 -14.84213 -14.68877 -14.52709 -13.92881 -13.79988 -13.31334 -13.15171 -13.11004 -12.88361 -12.78844 -12.65289 -12.62468 -12.54931 -12.06726 -12.03979 -11.90945 -11.85634 -11.75023 -11.46414 -11.32951 -11.18499 -11.02058 -10.84761 -10.76631 -10.54873 -8.74893 -6.48562 1.47950 1.50653 1.58596 1.77006 1.93669 2.52010 3.16970 3.63771 3.66061 3.76095 3.91556 4.04956 4.18034 4.19455 4.27247 4.34633 4.40585 4.46552 4.51236 4.55219 4.57334 4.60987 4.72878 4.81491 4.81760 4.86097 4.95503 5.01042 5.03093 5.09811 5.16908 5.17534 5.27024 5.28739 5.30780 5.38265 5.44262 5.45338 5.57298 5.61864 5.82385 6.06028 6.44904 7.12195 7.32245 8.63516 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.003494 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.665117 B = 8012.574539 C = 8536.830321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.021 3.979 3 H 0.054 0.946 4 C -0.589 4.589 5 H 0.055 0.945 6 C -0.021 4.021 7 N -0.924 5.924 8 Si 1.117 2.883 9 H -0.259 1.259 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.449 3.551 13 O -0.542 6.542 14 O -0.370 6.370 15 C 0.056 3.944 16 C -0.101 4.101 17 C -0.078 4.078 18 H 0.071 0.929 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.092 4.092 23 H 0.068 0.932 24 C -0.145 4.145 25 C -0.103 4.103 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.255 0.745 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -1.504 20.591 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.001 3.999 3 H 0.072 0.928 4 C -0.626 4.626 5 H 0.073 0.927 6 C -0.221 4.221 7 N -0.560 5.560 8 Si 0.938 3.062 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.293 3.707 13 O -0.431 6.431 14 O -0.288 6.288 15 C -0.017 4.017 16 C -0.139 4.139 17 C -0.096 4.096 18 H 0.089 0.911 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.110 4.110 23 H 0.086 0.914 24 C -0.202 4.202 25 C -0.140 4.140 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.223 -1.899 19.569 19.923 hybrid contribution -0.807 -0.096 0.963 1.260 sum -4.030 -1.995 20.532 21.019 Atomic orbital electron populations 1.21537 0.92087 1.01409 1.02105 1.19052 0.96797 0.96607 0.87410 0.92819 1.22031 1.03952 1.25985 1.10597 0.92714 1.27362 0.94101 0.95822 1.04827 1.70923 1.41419 1.22332 1.21334 0.82953 0.75562 0.74902 0.72795 1.18403 1.21208 1.20179 1.26158 0.76446 0.83203 0.84855 1.90459 1.36946 1.28203 1.87450 1.86568 1.70283 1.56433 1.15544 1.23216 0.98290 0.95640 0.84599 1.21588 1.02114 1.00052 0.90115 1.21061 0.95158 0.99694 0.93711 0.91103 1.21694 0.95233 1.00915 0.98183 1.21519 1.00090 0.99463 0.94472 1.21587 0.95057 1.01207 0.96983 1.21141 0.95178 0.99845 0.94838 0.91377 1.21804 1.00913 1.00980 0.96488 1.21605 1.00293 0.99704 0.92403 0.93639 0.91649 0.91078 0.93496 0.92537 0.93188 0.90845 0.89898 0.93757 0.91838 0.91826 0.92109 0.91958 0.91192 0.92371 0.92164 0.92600 0.91624 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.13 71.98 0.66 -3.99 16 2 C 0.02 1.08 2.45 -12.29 -0.03 1.05 16 3 H 0.05 2.90 6.69 -2.39 -0.02 2.89 16 4 C -0.59 -33.81 7.55 25.60 0.19 -33.62 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C -0.02 -1.26 5.46 84.65 0.46 -0.79 16 7 N -0.92 -57.36 13.62 21.45 0.29 -57.07 16 8 Si 1.12 52.01 29.91 68.60 2.05 54.06 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.45 23.19 7.25 71.24 0.52 23.71 16 13 O -0.54 -31.55 15.78 21.96 0.35 -31.20 16 14 O -0.37 -16.01 10.03 -51.37 -0.52 -16.53 16 15 C 0.06 2.00 5.22 71.98 0.38 2.38 16 16 C -0.10 -2.58 5.06 30.59 0.15 -2.42 16 17 C -0.08 -1.62 2.19 -10.79 -0.02 -1.64 16 18 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 19 C -0.12 -2.70 4.96 30.60 0.15 -2.54 16 20 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 21 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 22 C -0.09 -1.33 2.72 -10.78 -0.03 -1.36 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 25 C -0.10 -1.69 4.49 30.61 0.14 -1.55 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.32 8.00 -2.38 -0.02 2.30 16 28 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.25 15.93 6.67 -92.71 -0.62 15.31 16 30 H 0.06 2.01 8.13 -2.38 -0.02 1.99 16 31 H 0.05 1.90 6.56 -2.39 -0.02 1.88 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.15 6.56 -2.39 -0.02 1.14 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -68.69 348.16 6.83 -61.86 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.08 Total: 14.17 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 3.57 Total: -25.30 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.29 Total: -57.07 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.17 Total: -47.73 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Total: -68.69 6.83 -61.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.519 kcal (2) G-P(sol) polarization free energy of solvation -68.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds