Wall clock time and date at job start Mon Mar 30 2020 01:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 C 1.50706 * 109.46672 * 240.00292 * 2 1 3 5 5 H 1.07997 * 119.99245 * 239.99887 * 4 2 1 6 6 C 1.37877 * 120.00188 * 60.00065 * 4 2 1 7 7 N 1.31512 * 119.99637 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99875 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46973 * 60.00020 * 8 6 4 10 10 H 1.48500 * 109.46960 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46882 * 299.99662 * 8 6 4 12 12 C 1.50692 * 109.47033 * 120.00175 * 2 1 3 13 13 O 1.20826 * 120.00039 * 120.00009 * 12 2 1 14 14 O 1.34227 * 120.00132 * 299.99403 * 12 2 1 15 15 C 1.45206 * 117.00004 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47128 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47351 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.46870 * 54.99634 * 17 16 15 19 19 C 1.52997 * 109.46975 * 294.99856 * 17 16 15 20 20 C 1.53006 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 17 22 22 C 1.52997 * 109.47592 * 300.00035 * 21 20 19 23 23 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47232 * 300.00195 * 22 21 20 25 25 C 1.52996 * 109.47165 * 60.00300 * 22 21 20 26 26 H 1.09002 * 109.47077 * 299.99723 * 1 2 3 27 27 H 1.09001 * 109.47405 * 59.99846 * 1 2 3 28 28 H 1.08995 * 109.47113 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99284 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47328 * 60.00127 * 15 14 12 31 31 H 1.09000 * 109.47132 * 300.00076 * 15 14 12 32 32 H 1.08998 * 109.47407 * 59.99569 * 16 15 14 33 33 H 1.09000 * 109.46682 * 299.99746 * 16 15 14 34 34 H 1.09001 * 109.46922 * 59.99912 * 19 17 16 35 35 H 1.09000 * 109.47140 * 299.99612 * 19 17 16 36 36 H 1.08993 * 109.46955 * 180.02562 * 20 19 17 37 37 H 1.09000 * 109.47050 * 300.00004 * 20 19 17 38 38 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 39 39 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47853 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.47153 * 299.99992 * 24 22 21 42 42 H 1.09001 * 109.46832 * 59.99801 * 24 22 21 43 43 H 1.08992 * 109.47534 * 180.02562 * 25 22 21 44 44 H 1.08996 * 109.47134 * 59.99508 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0081 9 1 1.8278 -2.5197 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 6 2.0323 -0.7104 1.2304 13 8 2.7269 -1.6928 1.1195 14 8 1.7081 -0.2518 2.4495 15 6 2.2278 -0.9858 3.5896 16 6 1.7557 -0.3193 4.8834 17 6 2.3027 -1.0930 6.0847 18 1 3.3872 -1.1683 6.0051 19 6 1.6943 -2.4966 6.1072 20 6 2.2418 -3.2706 7.3081 21 6 1.8754 -2.5351 8.5987 22 6 2.4838 -1.1314 8.5762 23 1 2.2232 -0.6076 9.4959 24 6 4.0060 -1.2371 8.4640 25 6 1.9364 -0.3575 7.3753 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7080 1.1609 -3.4844 30 1 3.3173 -0.9847 3.5565 31 1 1.8643 -2.0129 3.5568 32 1 0.6663 -0.3206 4.9163 33 1 2.1190 0.7079 4.9163 34 1 1.9557 -3.0206 5.1878 35 1 0.6098 -2.4213 6.1867 36 1 1.8087 -4.2706 7.3239 37 1 3.3262 -3.3459 7.2281 38 1 0.7910 -2.4598 8.6787 39 1 2.2658 -3.0862 9.4543 40 1 4.4395 -0.2372 8.4475 41 1 4.3960 -1.7884 9.3196 42 1 4.2670 -1.7610 7.5445 43 1 2.3701 0.6423 7.3590 44 1 0.8520 -0.2823 7.4553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327995449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:20 Heat of formation + Delta-G solvation = -135.891145 kcal Electronic energy + Delta-G solvation = -20808.984046 eV Core-core repulsion = 17724.502117 eV Total energy + Delta-G solvation = -3084.481929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78536 -39.24209 -35.90222 -33.87163 -33.76899 -31.69138 -30.60579 -28.60614 -26.95418 -25.18227 -24.03302 -22.66750 -22.32610 -20.69074 -19.69693 -18.79742 -16.69725 -16.09986 -15.91191 -15.70453 -15.42414 -14.84026 -14.55937 -14.24823 -13.96611 -13.87421 -12.98152 -12.94148 -12.73203 -12.52388 -12.10714 -11.98429 -11.75448 -11.61452 -11.43874 -11.22772 -11.09387 -11.00929 -10.93793 -10.78462 -10.67036 -10.40307 -10.30994 -10.16598 -10.09493 -10.02907 -9.79965 -9.05331 -9.02888 -8.42561 -6.08562 -4.13924 3.33392 3.36159 3.37445 3.39504 3.57267 4.41524 4.47977 4.49995 4.54258 4.88980 4.95602 5.10742 5.17086 5.24021 5.25050 5.26791 5.31958 5.45350 5.48355 5.53439 5.61924 5.65605 5.73682 5.80456 5.84620 5.89822 5.94991 6.02221 6.10878 6.13631 6.18050 6.25877 6.33305 6.41383 6.69150 6.90308 6.91412 7.29685 7.47017 7.76624 7.96934 8.17092 8.89428 8.97152 9.51435 10.98879 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044260 B = 0.003177 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.475558 B = 8810.105480 C = 9010.079955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.464 3.536 13 O -0.520 6.520 14 O -0.368 6.368 15 C 0.062 3.938 16 C -0.114 4.114 17 C -0.085 4.085 18 H 0.075 0.925 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.092 4.092 23 H 0.067 0.933 24 C -0.152 4.152 25 C -0.108 4.108 26 H 0.023 0.977 27 H 0.096 0.904 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -2.736 21.458 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.407 6.407 14 O -0.286 6.286 15 C -0.013 4.013 16 C -0.151 4.151 17 C -0.104 4.104 18 H 0.093 0.907 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.110 4.110 23 H 0.085 0.915 24 C -0.210 4.210 25 C -0.145 4.145 26 H 0.042 0.958 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.060 -2.927 21.310 21.536 hybrid contribution 0.403 -0.563 -0.766 1.032 sum 1.463 -3.490 20.544 20.890 Atomic orbital electron populations 1.21727 0.95663 0.99992 1.01695 1.18740 0.94835 0.96942 0.85678 0.91895 1.21109 1.31907 1.13232 0.88857 0.90721 1.24936 0.94919 0.95022 0.99110 1.69875 1.36512 1.22837 1.23922 0.86434 0.79293 0.79672 0.81334 1.20087 1.21214 1.20089 1.25307 0.76534 0.83183 0.84086 1.90486 1.36469 1.26840 1.86896 1.86599 1.70449 1.56013 1.15543 1.22898 0.98517 0.95634 0.84203 1.21591 1.01877 0.99897 0.91747 1.21129 1.00688 0.94825 0.93718 0.90678 1.21690 1.00527 0.95300 0.98255 1.21572 1.01226 0.98497 0.94596 1.21564 1.00478 0.95554 0.97564 1.21090 0.95658 0.96079 0.98175 0.91487 1.21956 0.95343 1.01674 1.01981 1.21586 1.00919 0.98476 0.93523 0.95786 0.88592 0.95050 0.92660 0.92199 0.91872 0.90952 0.90936 0.91589 0.91790 0.92200 0.91720 0.92080 0.92333 0.92830 0.93057 0.91872 0.91840 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.90 37.16 0.33 -2.88 16 2 C 0.06 1.48 2.74 -92.92 -0.25 1.23 16 3 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.66 8.37 -34.44 -0.29 -14.95 16 5 H 0.07 2.22 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.46 11.25 7.25 36.00 0.26 11.51 16 13 O -0.52 -13.62 15.21 -18.75 -0.29 -13.90 16 14 O -0.37 -7.56 10.12 -39.25 -0.40 -7.96 16 15 C 0.06 1.01 5.22 37.16 0.19 1.20 16 16 C -0.11 -1.40 5.06 -26.73 -0.14 -1.54 16 17 C -0.09 -0.86 1.91 -90.62 -0.17 -1.03 16 18 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 19 C -0.12 -1.20 4.96 -26.73 -0.13 -1.33 16 20 C -0.12 -1.04 5.65 -26.73 -0.15 -1.20 16 21 C -0.11 -0.88 5.45 -26.73 -0.15 -1.03 16 22 C -0.09 -0.71 3.19 -90.62 -0.29 -1.00 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 24 C -0.15 -1.17 8.50 37.16 0.32 -0.86 16 25 C -0.11 -0.93 4.73 -26.73 -0.13 -1.06 16 26 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.06 1.03 6.56 -51.93 -0.34 0.69 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -29.70 338.77 -8.40 -38.11 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.74 Total: -2.22 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.69 Total: -11.32 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.63 Total: -24.50 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.68 Total: -21.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.70 -8.40 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.783 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds