Wall clock time and date at job start Mon Mar 30 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 C 1.50706 * 109.46672 * 240.00292 * 2 1 3 5 5 H 1.07997 * 119.99245 * 239.99887 * 4 2 1 6 6 C 1.37877 * 120.00188 * 60.00065 * 4 2 1 7 7 N 1.31512 * 119.99637 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99875 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46973 * 60.00020 * 8 6 4 10 10 H 1.48500 * 109.46960 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46882 * 299.99662 * 8 6 4 12 12 C 1.50692 * 109.47033 * 120.00175 * 2 1 3 13 13 O 1.20826 * 120.00039 * 120.00009 * 12 2 1 14 14 O 1.34227 * 120.00132 * 299.99403 * 12 2 1 15 15 C 1.45206 * 117.00004 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47128 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47351 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.46870 * 54.99634 * 17 16 15 19 19 C 1.52997 * 109.46975 * 294.99856 * 17 16 15 20 20 C 1.53006 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 17 22 22 C 1.52997 * 109.47592 * 300.00035 * 21 20 19 23 23 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47232 * 300.00195 * 22 21 20 25 25 C 1.52996 * 109.47165 * 60.00300 * 22 21 20 26 26 H 1.09002 * 109.47077 * 299.99723 * 1 2 3 27 27 H 1.09001 * 109.47405 * 59.99846 * 1 2 3 28 28 H 1.08995 * 109.47113 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99284 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47328 * 60.00127 * 15 14 12 31 31 H 1.09000 * 109.47132 * 300.00076 * 15 14 12 32 32 H 1.08998 * 109.47407 * 59.99569 * 16 15 14 33 33 H 1.09000 * 109.46682 * 299.99746 * 16 15 14 34 34 H 1.09001 * 109.46922 * 59.99912 * 19 17 16 35 35 H 1.09000 * 109.47140 * 299.99612 * 19 17 16 36 36 H 1.08993 * 109.46955 * 180.02562 * 20 19 17 37 37 H 1.09000 * 109.47050 * 300.00004 * 20 19 17 38 38 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 39 39 H 1.09002 * 109.46719 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47853 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.47153 * 299.99992 * 24 22 21 42 42 H 1.09001 * 109.46832 * 59.99801 * 24 22 21 43 43 H 1.08992 * 109.47534 * 180.02562 * 25 22 21 44 44 H 1.08996 * 109.47134 * 59.99508 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0081 9 1 1.8278 -2.5197 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 6 2.0323 -0.7104 1.2304 13 8 2.7269 -1.6928 1.1195 14 8 1.7081 -0.2518 2.4495 15 6 2.2278 -0.9858 3.5896 16 6 1.7557 -0.3193 4.8834 17 6 2.3027 -1.0930 6.0847 18 1 3.3872 -1.1683 6.0051 19 6 1.6943 -2.4966 6.1072 20 6 2.2418 -3.2706 7.3081 21 6 1.8754 -2.5351 8.5987 22 6 2.4838 -1.1314 8.5762 23 1 2.2232 -0.6076 9.4959 24 6 4.0060 -1.2371 8.4640 25 6 1.9364 -0.3575 7.3753 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7080 1.1609 -3.4844 30 1 3.3173 -0.9847 3.5565 31 1 1.8643 -2.0129 3.5568 32 1 0.6663 -0.3206 4.9163 33 1 2.1190 0.7079 4.9163 34 1 1.9557 -3.0206 5.1878 35 1 0.6098 -2.4213 6.1867 36 1 1.8087 -4.2706 7.3239 37 1 3.3262 -3.3459 7.2281 38 1 0.7910 -2.4598 8.6787 39 1 2.2658 -3.0862 9.4543 40 1 4.4395 -0.2372 8.4475 41 1 4.3960 -1.7884 9.3196 42 1 4.2670 -1.7610 7.5445 43 1 2.3701 0.6423 7.3590 44 1 0.8520 -0.2823 7.4553 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327995449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:19 Heat of formation + Delta-G solvation = -149.449610 kcal Electronic energy + Delta-G solvation = -20809.571986 eV Core-core repulsion = 17724.502117 eV Total energy + Delta-G solvation = -3085.069869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36986 -40.24350 -37.60458 -35.93045 -34.80750 -32.67155 -32.37443 -29.68212 -27.59539 -27.29159 -25.50610 -24.05697 -23.18624 -21.71182 -21.45779 -19.50072 -18.61972 -18.02269 -17.55789 -17.28946 -16.47234 -16.16202 -15.72888 -15.27546 -15.14656 -14.81700 -14.65350 -14.22699 -13.96233 -13.60857 -13.44350 -13.05979 -12.99581 -12.89843 -12.74014 -12.62286 -12.60203 -12.44396 -12.28760 -12.11684 -12.04950 -11.87873 -11.77010 -11.41638 -11.18023 -11.12981 -11.02340 -10.83002 -10.71668 -10.53501 -8.20915 -6.34583 1.41635 1.42485 1.45099 1.51959 1.91925 2.43622 3.08986 3.67623 3.72806 3.79379 3.98513 4.05987 4.20367 4.28659 4.31790 4.43022 4.50514 4.54420 4.58337 4.66683 4.67903 4.71011 4.86830 4.89232 4.91210 4.96958 5.01021 5.07545 5.10245 5.15288 5.18709 5.30776 5.34511 5.39002 5.42141 5.48858 5.52075 5.53117 5.67411 5.68985 5.87716 6.09567 6.71597 7.04838 7.34299 8.85484 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044260 B = 0.003177 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.475558 B = 8810.105480 C = 9010.079955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.051 0.949 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.471 3.529 13 O -0.545 6.545 14 O -0.364 6.364 15 C 0.056 3.944 16 C -0.104 4.104 17 C -0.079 4.079 18 H 0.073 0.927 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.090 4.090 23 H 0.078 0.922 24 C -0.153 4.153 25 C -0.105 4.105 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.269 0.731 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -2.741 22.637 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.316 3.684 13 O -0.435 6.435 14 O -0.281 6.281 15 C -0.017 4.017 16 C -0.142 4.142 17 C -0.098 4.098 18 H 0.092 0.908 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.108 4.108 23 H 0.096 0.904 24 C -0.210 4.210 25 C -0.142 4.142 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.857 -2.914 22.514 22.718 hybrid contribution 0.466 -0.543 -1.057 1.276 sum 1.323 -3.457 21.458 21.775 Atomic orbital electron populations 1.21560 0.94323 0.99869 1.02052 1.18676 0.95966 0.96110 0.86211 0.93167 1.21242 1.32804 1.13368 0.90606 0.92630 1.25648 0.94844 0.95645 1.01574 1.69954 1.36540 1.23375 1.24862 0.85517 0.78728 0.78677 0.78185 1.19857 1.19742 1.19915 1.24858 0.75988 0.82523 0.84984 1.90465 1.37609 1.27915 1.87535 1.86549 1.70101 1.56144 1.15349 1.23292 0.98557 0.95863 0.84033 1.21606 1.02155 1.00124 0.90283 1.21093 1.00453 0.94755 0.93466 0.90845 1.21688 1.00671 0.95282 0.98251 1.21559 1.01098 0.98613 0.94474 1.21557 1.00673 0.95489 0.97226 1.21093 0.95575 0.96044 0.98106 0.90393 1.21955 0.95385 1.01762 1.01875 1.21569 1.01228 0.98565 0.92869 0.93219 0.90301 0.95303 0.92186 0.92368 0.91973 0.90536 0.90384 0.93238 0.91664 0.91875 0.91840 0.91854 0.91371 0.92709 0.92324 0.92732 0.91440 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.90 71.98 0.64 -5.15 16 2 C 0.05 2.60 2.74 -12.29 -0.03 2.57 16 3 H 0.05 2.75 8.14 -2.39 -0.02 2.73 16 4 C -0.54 -31.49 8.37 25.60 0.21 -31.27 16 5 H 0.06 3.38 6.76 -2.91 -0.02 3.36 16 6 C 0.02 1.28 5.30 84.65 0.45 1.72 16 7 N -0.91 -51.03 11.32 21.45 0.24 -50.78 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.47 23.05 7.25 71.23 0.52 23.56 16 13 O -0.55 -29.08 15.21 21.97 0.33 -28.74 16 14 O -0.36 -14.84 10.12 -51.39 -0.52 -15.36 16 15 C 0.06 1.80 5.22 71.98 0.38 2.18 16 16 C -0.10 -2.44 5.06 30.59 0.15 -2.28 16 17 C -0.08 -1.49 1.91 -10.80 -0.02 -1.51 16 18 H 0.07 1.43 6.43 -2.39 -0.02 1.41 16 19 C -0.12 -2.30 4.96 30.60 0.15 -2.15 16 20 C -0.12 -1.89 5.65 30.60 0.17 -1.72 16 21 C -0.11 -1.49 5.45 30.59 0.17 -1.32 16 22 C -0.09 -1.19 3.19 -10.80 -0.03 -1.23 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 24 C -0.15 -2.06 8.50 71.98 0.61 -1.45 16 25 C -0.10 -1.59 4.73 30.59 0.14 -1.45 16 26 H 0.05 2.08 8.11 -2.39 -0.02 2.06 16 27 H 0.08 4.08 6.07 -2.39 -0.01 4.06 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 30 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 31 H 0.06 2.02 6.56 -2.39 -0.02 2.01 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.09 6.56 -2.39 -0.02 1.07 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 0.83 4.81 -2.39 -0.01 0.82 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -62.63 338.77 6.54 -56.09 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.95 Total: 11.97 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.51 Total: -19.50 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.24 Total: -50.78 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.19 Total: -44.10 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.63 6.54 -56.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.360 kcal (2) G-P(sol) polarization free energy of solvation -62.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds