Wall clock time and date at job start Mon Mar 30 2020 00:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42908 * 113.99598 * 2 1 4 4 C 1.50698 * 109.46488 * 180.02562 * 3 2 1 5 5 N 1.30717 * 125.53315 * 269.95885 * 4 3 2 6 6 N 1.40442 * 106.79584 * 179.78761 * 5 4 3 7 7 H 0.96995 * 126.82318 * 180.25266 * 6 5 4 8 8 C 1.34425 * 106.35309 * 0.40650 * 6 5 4 9 9 C 1.50704 * 125.96298 * 179.85756 * 8 6 5 10 10 N 1.46896 * 109.46988 * 94.71112 * 9 8 6 11 11 C 1.46904 * 110.99678 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47257 * 55.00230 * 12 11 10 14 14 C 1.53001 * 109.47119 * 295.00211 * 12 11 10 15 15 C 1.53004 * 109.47059 * 175.00276 * 12 11 10 16 16 C 1.50699 * 109.46847 * 184.99953 * 15 12 11 17 17 H 1.08002 * 120.00511 * 0.02562 * 16 15 12 18 18 C 1.37884 * 119.99783 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99573 * 180.27665 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 16 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 16 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 16 24 24 N 1.30832 * 108.08056 * 359.59468 * 8 6 5 25 25 H 1.09001 * 109.47368 * 59.99123 * 1 2 3 26 26 H 1.08995 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46480 * 299.99409 * 1 2 3 28 28 H 1.09000 * 109.46630 * 60.00996 * 3 2 1 29 29 H 1.08988 * 109.47254 * 300.00023 * 3 2 1 30 30 H 1.09005 * 109.46518 * 334.71296 * 9 8 6 31 31 H 1.08999 * 109.46971 * 214.71524 * 9 8 6 32 32 H 1.00906 * 110.99993 * 56.05228 * 10 9 8 33 33 H 1.08997 * 109.47284 * 60.00612 * 11 10 9 34 34 H 1.09005 * 109.47101 * 300.00211 * 11 10 9 35 35 H 1.09006 * 109.46667 * 300.00073 * 14 12 11 36 36 H 1.09001 * 109.47435 * 59.99664 * 14 12 11 37 37 H 1.08997 * 109.47191 * 180.02562 * 14 12 11 38 38 H 1.08992 * 109.47264 * 65.00127 * 15 12 11 39 39 H 1.09005 * 109.46510 * 304.99713 * 15 12 11 40 40 H 0.97004 * 119.99485 * 179.72881 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2703 1.1271 1.0628 6 7 5.5955 1.0168 0.6111 7 1 6.3929 0.9492 1.1593 8 6 5.5397 1.0269 -0.7320 9 6 6.7176 0.9341 -1.6674 10 7 6.9170 -0.4656 -2.0662 11 6 8.0600 -0.5949 -2.9800 12 6 8.2354 -2.0632 -3.3727 13 1 7.3017 -2.4421 -3.7883 14 6 8.6119 -2.8806 -2.1354 15 6 9.3450 -2.1820 -4.4195 16 6 9.4348 -3.6087 -4.8964 17 1 8.7671 -4.3559 -4.4936 18 6 10.3689 -3.9601 -5.8479 19 7 10.4436 -5.2040 -6.2680 20 14 11.5225 -2.6673 -6.5462 21 1 12.7541 -2.6043 -5.7189 22 1 11.8814 -3.0262 -7.9417 23 1 10.8490 -1.3439 -6.5330 24 7 4.2839 1.1257 -1.0854 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 7.6121 1.2991 -1.1626 31 1 6.5271 1.5406 -2.5528 32 1 6.0789 -0.8470 -2.4788 33 1 8.9636 -0.2407 -2.4839 34 1 7.8792 0.0011 -3.8746 35 1 9.5456 -2.5016 -1.7199 36 1 7.8214 -2.7959 -1.3896 37 1 8.7373 -3.9266 -2.4153 38 1 10.2959 -1.8866 -3.9762 39 1 9.1194 -1.5302 -5.2636 40 1 11.0982 -5.4504 -6.9402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330653698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:05 Heat of formation + Delta-G solvation = 3.786588 kcal Electronic energy + Delta-G solvation = -19665.372915 eV Core-core repulsion = 16515.700274 eV Total energy + Delta-G solvation = -3149.672641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.26444 -38.86606 -38.42360 -35.91103 -34.26956 -33.81709 -32.51153 -29.72426 -29.08890 -27.81358 -26.64772 -25.82204 -23.65670 -22.50119 -21.62140 -20.78424 -19.09845 -18.84261 -17.67567 -16.91922 -16.73016 -16.46569 -16.32983 -16.24086 -15.89135 -15.38993 -15.06269 -14.66640 -14.22742 -13.79620 -13.47284 -13.36732 -13.32334 -13.01868 -12.94734 -12.76129 -12.46894 -12.39591 -12.16552 -11.69443 -11.44896 -11.26578 -11.24201 -11.19737 -11.05043 -10.74420 -10.72687 -10.71041 -9.43526 -8.23534 -6.26183 0.39604 1.38779 1.41013 1.51039 1.52519 1.58157 2.40500 2.70110 3.12032 3.13305 3.41027 3.53294 3.75592 4.12035 4.22656 4.25364 4.33737 4.50055 4.53499 4.54499 4.57135 4.66085 4.88700 4.88901 4.93025 4.97079 5.08737 5.12381 5.21237 5.41583 5.43729 5.57516 5.71897 5.76074 5.93827 6.08577 6.11071 6.26366 6.37895 6.82317 6.95854 7.37339 8.93555 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.002974 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.656598 B = 9412.929238 C = 9848.649306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.158 3.842 4 C 0.211 3.789 5 N -0.317 5.317 6 N -0.457 5.457 7 H 0.457 0.543 8 C 0.299 3.701 9 C 0.137 3.863 10 N -0.687 5.687 11 C 0.077 3.923 12 C -0.072 4.072 13 H 0.044 0.956 14 C -0.116 4.116 15 C -0.006 4.006 16 C -0.519 4.519 17 H 0.030 0.970 18 C -0.003 4.003 19 N -0.957 5.957 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.242 1.242 24 N -0.553 5.553 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.344 0.656 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 19.448 13.991 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.079 3.921 4 C -0.072 4.072 5 N -0.149 5.149 6 N -0.177 5.177 7 H 0.306 0.694 8 C 0.020 3.980 9 C 0.006 3.994 10 N -0.319 5.319 11 C -0.052 4.052 12 C -0.091 4.091 13 H 0.063 0.937 14 C -0.174 4.174 15 C -0.044 4.044 16 C -0.558 4.558 17 H 0.048 0.952 18 C -0.199 4.199 19 N -0.599 5.599 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.165 1.165 24 N -0.284 5.284 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.635 19.065 14.832 27.738 hybrid contribution 0.642 0.036 -1.103 1.277 sum -12.992 19.101 13.729 26.873 Atomic orbital electron populations 1.22990 0.78040 1.04114 1.01662 1.87911 1.22521 1.27345 1.95774 1.20575 0.81924 0.85763 1.03811 1.24256 0.98179 0.99054 0.85720 1.77891 0.88200 1.25920 1.22929 1.47904 1.08043 1.55248 1.06550 0.69439 1.24531 0.94735 0.94339 0.84394 1.20555 0.91727 0.91241 0.95852 1.60490 1.08776 1.16125 1.46515 1.21962 0.93667 0.95557 0.93979 1.20896 0.97917 0.94683 0.95600 0.93720 1.21505 1.00614 0.98455 0.96789 1.19568 0.95469 0.94491 0.94904 1.21492 1.17352 0.95137 1.21779 0.95158 1.26070 0.99411 0.97471 0.96902 1.70093 1.37594 1.19850 1.32345 0.85639 0.79204 0.80385 0.77273 1.19223 1.21571 1.16492 1.70331 1.01008 1.25355 1.31704 0.92344 0.88770 0.92086 0.88836 0.88930 0.85677 0.90231 0.83821 0.89379 0.94246 0.93090 0.92107 0.95886 0.95931 0.96242 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.32 10.69 -148.98 -1.59 -10.91 16 3 C 0.16 3.01 6.56 71.24 0.47 3.47 16 4 C 0.21 5.33 7.77 138.63 1.08 6.40 16 5 N -0.32 -7.92 12.80 -51.33 -0.66 -8.58 16 6 N -0.46 -9.12 7.45 -50.71 -0.38 -9.50 16 7 H 0.46 5.99 8.96 -213.11 -1.91 4.08 16 8 C 0.30 6.47 7.75 138.23 1.07 7.54 16 9 C 0.14 2.38 6.31 85.56 0.54 2.92 16 10 N -0.69 -15.91 5.94 -517.91 -3.08 -18.99 16 11 C 0.08 2.02 5.08 86.30 0.44 2.46 16 12 C -0.07 -2.64 2.48 -10.79 -0.03 -2.67 16 13 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.12 -4.25 8.89 71.98 0.64 -3.61 16 15 C -0.01 -0.29 3.52 29.85 0.10 -0.18 16 16 C -0.52 -29.69 8.96 25.60 0.23 -29.47 16 17 H 0.03 1.93 7.30 -2.91 -0.02 1.91 16 18 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 19 N -0.96 -60.81 13.96 21.45 0.30 -60.51 16 20 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 24 N -0.55 -14.54 11.19 -179.72 -2.01 -16.56 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.34 8.95 8.72 -89.69 -0.78 8.16 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.06 1.99 7.75 -2.39 -0.02 1.97 16 37 H 0.02 0.98 6.95 -2.39 -0.02 0.96 16 38 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 39 H 0.02 0.85 7.20 -2.38 -0.02 0.83 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -74.85 336.36 -0.98 -75.83 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -1.70 Total: 14.70 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 6.25 Total: -11.24 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.82 Total: -114.13 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.59 Total: -10.91 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -74.85 -0.98 -75.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330653698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.618 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds