Wall clock time and date at job start Mon Mar 30 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99900 * 2 1 4 4 C 1.53005 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46740 * 65.00107 * 4 3 2 6 6 C 1.46900 * 111.00039 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46816 * 179.97438 * 7 6 5 9 9 C 1.35353 * 126.75076 * 124.99944 * 8 7 6 10 10 N 1.35309 * 106.17498 * 179.97438 * 9 8 7 11 11 C 1.46499 * 125.87027 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47215 * 124.97307 * 11 10 9 13 13 C 1.50701 * 109.47206 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00015 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46990 * 60.00202 * 17 15 13 19 19 H 1.48497 * 109.46746 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47164 * 300.00016 * 17 15 13 21 21 N 1.28714 * 108.26535 * 359.97438 * 10 9 8 22 22 N 1.28637 * 110.18046 * 0.02562 * 21 10 9 23 23 H 1.09005 * 109.47139 * 60.00179 * 1 2 3 24 24 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47931 * 300.00248 * 1 2 3 26 26 H 1.09007 * 109.46980 * 59.99924 * 3 2 1 27 27 H 1.09000 * 109.47447 * 299.99744 * 3 2 1 28 28 H 1.09002 * 109.47014 * 305.00550 * 4 3 2 29 29 H 1.08997 * 109.47030 * 185.00344 * 4 3 2 30 30 H 1.00894 * 111.00324 * 56.04518 * 5 4 3 31 31 H 1.09009 * 109.47109 * 59.99816 * 6 5 4 32 32 H 1.09003 * 109.46823 * 300.00195 * 6 5 4 33 33 H 1.08997 * 109.47274 * 60.00346 * 7 6 5 34 34 H 1.09004 * 109.46966 * 299.99509 * 7 6 5 35 35 H 1.08002 * 126.91189 * 359.97438 * 9 8 7 36 36 H 1.08997 * 109.47592 * 244.97299 * 11 10 9 37 37 H 1.09007 * 109.46901 * 4.97623 * 11 10 9 38 38 H 1.09001 * 109.47531 * 300.00255 * 12 11 10 39 39 H 1.09007 * 109.46928 * 60.00332 * 12 11 10 40 40 H 0.96999 * 119.99613 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 5.4404 0.4293 -1.2891 7 6 5.8622 -0.2208 -2.6083 8 6 7.3627 -0.3566 -2.6441 9 6 8.0682 -1.4929 -2.8518 10 7 9.3737 -1.1408 -2.7999 11 6 10.5140 -2.0447 -2.9693 12 6 11.4207 -1.5186 -4.0839 13 6 12.5933 -2.4489 -4.2586 14 1 12.6828 -3.3276 -3.6372 15 6 13.5521 -2.1780 -5.2118 16 7 13.4434 -1.1076 -5.9681 17 14 15.0053 -3.3315 -5.4288 18 1 14.5131 -4.6853 -5.7896 19 1 15.8853 -2.8208 -6.5104 20 1 15.7723 -3.4056 -4.1595 21 7 9.4415 0.1249 -2.5760 22 7 8.2592 0.6222 -2.4778 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 1.6885 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9784 2.1765 0.0903 30 1 3.6425 1.0802 -2.0526 31 1 5.7686 -0.1924 -0.4559 32 1 5.8969 1.4158 -1.2082 33 1 5.5341 0.4012 -3.4411 34 1 5.4056 -1.2073 -2.6895 35 1 7.6694 -2.4816 -3.0244 36 1 11.0771 -2.0980 -2.0376 37 1 10.1533 -3.0390 -3.2333 38 1 10.8576 -1.4654 -5.0157 39 1 11.7813 -0.5244 -3.8199 40 1 14.1181 -0.9169 -6.6384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331858205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:59 Heat of formation + Delta-G solvation = 36.346439 kcal Electronic energy + Delta-G solvation = -19233.408601 eV Core-core repulsion = 16085.147862 eV Total energy + Delta-G solvation = -3148.260740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.73479 -38.36513 -36.55692 -35.05676 -33.15315 -32.46771 -30.21619 -29.77803 -27.59062 -26.20631 -25.49570 -23.05203 -22.33536 -22.12385 -21.26748 -19.79229 -17.09763 -16.97445 -16.35469 -15.96180 -15.84798 -15.70555 -15.10836 -14.81825 -14.57826 -14.20577 -13.90049 -13.57772 -13.29957 -12.85472 -12.45865 -12.31315 -11.96661 -11.75402 -11.68873 -11.27827 -11.24460 -11.14118 -10.98253 -10.84036 -10.51345 -10.24552 -10.00562 -9.94331 -9.44803 -9.27021 -8.71568 -8.54602 -8.52055 -6.16520 -4.23437 2.15224 2.93538 3.02247 3.24625 3.30163 3.31806 3.51468 3.95606 4.32932 4.73019 4.74648 4.83864 5.00126 5.04462 5.06919 5.10731 5.19521 5.22638 5.24161 5.29144 5.39624 5.43720 5.61772 5.63223 5.68201 5.87268 5.99260 6.06705 6.23153 6.44952 6.58331 6.77902 6.93140 7.07659 7.23358 7.40946 7.50394 7.78594 8.10490 8.81614 9.05115 9.41997 10.94461 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.068190 B = 0.002333 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.520543 B =11998.424254 C =12158.648626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.064 3.936 4 C 0.059 3.941 5 N -0.684 5.684 6 C 0.066 3.934 7 C -0.022 4.022 8 C -0.036 4.036 9 C -0.054 4.054 10 N -0.270 5.270 11 C 0.112 3.888 12 C 0.015 3.985 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.886 5.886 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 N -0.074 5.074 22 N -0.286 5.286 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.339 0.661 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.183 0.817 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.564 1.678 10.127 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.013 4.013 4 C -0.070 4.070 5 N -0.315 5.315 6 C -0.063 4.063 7 C -0.061 4.061 8 C -0.176 4.176 9 C -0.207 4.207 10 N -0.063 5.063 11 C -0.007 4.007 12 C -0.023 4.023 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.524 5.524 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.054 5.054 22 N -0.152 5.152 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.201 0.799 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.469 2.163 10.421 23.962 hybrid contribution 0.315 -0.487 -0.592 0.829 sum -21.154 1.676 9.829 23.386 Atomic orbital electron populations 1.22734 0.81678 1.02698 0.99576 1.88022 1.18899 1.27173 1.95234 1.22563 0.93657 0.85203 0.99892 1.21967 0.92942 0.97959 0.94135 1.60401 1.11288 1.55945 1.03845 1.21884 0.86474 0.99917 0.98073 1.19671 0.86613 1.02400 0.97455 1.21756 0.97129 0.90114 1.08581 1.23373 0.84273 1.01984 1.11034 1.47907 1.07791 1.07982 1.42662 1.22735 0.83844 0.90481 1.03679 1.19399 0.93268 0.98216 0.91379 1.20906 1.07095 1.09324 1.19854 0.92145 1.25008 0.98250 0.95390 0.95438 1.69968 1.35242 1.25684 1.21485 0.86525 0.81996 0.80782 0.77940 1.20080 1.21115 1.20016 1.78306 1.17418 0.91766 1.17906 1.74992 0.94990 1.26823 1.18387 0.94270 0.89693 0.94487 0.93051 0.93415 0.90068 0.93616 0.84382 0.91004 0.94232 0.90733 0.89613 0.79941 0.89230 0.88754 0.95832 0.94437 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.70 10.65 -35.23 -0.38 -4.07 16 3 C 0.06 0.49 6.22 37.16 0.23 0.72 16 4 C 0.06 0.51 6.07 -3.82 -0.02 0.49 16 5 N -0.68 -6.78 6.45 -113.77 -0.73 -7.51 16 6 C 0.07 0.75 5.66 -3.83 -0.02 0.73 16 7 C -0.02 -0.26 6.05 -27.88 -0.17 -0.43 16 8 C -0.04 -0.58 6.50 -82.77 -0.54 -1.12 16 9 C -0.05 -0.86 11.49 -17.05 -0.20 -1.06 16 10 N -0.27 -5.19 3.44 -61.26 -0.21 -5.40 16 11 C 0.11 2.15 6.39 -4.04 -0.03 2.13 16 12 C 0.02 0.38 5.10 -27.88 -0.14 0.24 16 13 C -0.53 -14.21 9.11 -34.44 -0.31 -14.53 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 17 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 N -0.07 -1.60 12.91 60.35 0.78 -0.82 16 22 N -0.29 -5.62 12.40 33.29 0.41 -5.20 16 23 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.34 2.95 8.73 -39.30 -0.34 2.60 16 31 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -32.27 343.93 -6.06 -38.33 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.64 Total: -1.04 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.18 Total: -9.89 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.98 Total: -44.30 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.38 Total: -4.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.27 -6.06 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331858205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.672 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds