Wall clock time and date at job start Mon Mar 30 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99900 * 2 1 4 4 C 1.53005 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46740 * 65.00107 * 4 3 2 6 6 C 1.46900 * 111.00039 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46816 * 179.97438 * 7 6 5 9 9 C 1.35353 * 126.75076 * 124.99944 * 8 7 6 10 10 N 1.35309 * 106.17498 * 179.97438 * 9 8 7 11 11 C 1.46499 * 125.87027 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47215 * 124.97307 * 11 10 9 13 13 C 1.50701 * 109.47206 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00015 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46990 * 60.00202 * 17 15 13 19 19 H 1.48497 * 109.46746 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47164 * 300.00016 * 17 15 13 21 21 N 1.28714 * 108.26535 * 359.97438 * 10 9 8 22 22 N 1.28637 * 110.18046 * 0.02562 * 21 10 9 23 23 H 1.09005 * 109.47139 * 60.00179 * 1 2 3 24 24 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47931 * 300.00248 * 1 2 3 26 26 H 1.09007 * 109.46980 * 59.99924 * 3 2 1 27 27 H 1.09000 * 109.47447 * 299.99744 * 3 2 1 28 28 H 1.09002 * 109.47014 * 305.00550 * 4 3 2 29 29 H 1.08997 * 109.47030 * 185.00344 * 4 3 2 30 30 H 1.00894 * 111.00324 * 56.04518 * 5 4 3 31 31 H 1.09009 * 109.47109 * 59.99816 * 6 5 4 32 32 H 1.09003 * 109.46823 * 300.00195 * 6 5 4 33 33 H 1.08997 * 109.47274 * 60.00346 * 7 6 5 34 34 H 1.09004 * 109.46966 * 299.99509 * 7 6 5 35 35 H 1.08002 * 126.91189 * 359.97438 * 9 8 7 36 36 H 1.08997 * 109.47592 * 244.97299 * 11 10 9 37 37 H 1.09007 * 109.46901 * 4.97623 * 11 10 9 38 38 H 1.09001 * 109.47531 * 300.00255 * 12 11 10 39 39 H 1.09007 * 109.46928 * 60.00332 * 12 11 10 40 40 H 0.96999 * 119.99613 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 5.4404 0.4293 -1.2891 7 6 5.8622 -0.2208 -2.6083 8 6 7.3627 -0.3566 -2.6441 9 6 8.0682 -1.4929 -2.8518 10 7 9.3737 -1.1408 -2.7999 11 6 10.5140 -2.0447 -2.9693 12 6 11.4207 -1.5186 -4.0839 13 6 12.5933 -2.4489 -4.2586 14 1 12.6828 -3.3276 -3.6372 15 6 13.5521 -2.1780 -5.2118 16 7 13.4434 -1.1076 -5.9681 17 14 15.0053 -3.3315 -5.4288 18 1 14.5131 -4.6853 -5.7896 19 1 15.8853 -2.8208 -6.5104 20 1 15.7723 -3.4056 -4.1595 21 7 9.4415 0.1249 -2.5760 22 7 8.2592 0.6222 -2.4778 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3635 0.5138 0.8899 26 1 1.6885 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9784 2.1765 0.0903 30 1 3.6425 1.0802 -2.0526 31 1 5.7686 -0.1924 -0.4559 32 1 5.8969 1.4158 -1.2082 33 1 5.5341 0.4012 -3.4411 34 1 5.4056 -1.2073 -2.6895 35 1 7.6694 -2.4816 -3.0244 36 1 11.0771 -2.0980 -2.0376 37 1 10.1533 -3.0390 -3.2333 38 1 10.8576 -1.4654 -5.0157 39 1 11.7813 -0.5244 -3.8199 40 1 14.1181 -0.9169 -6.6384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331858205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:59 Heat of formation + Delta-G solvation = 12.391859 kcal Electronic energy + Delta-G solvation = -19234.447350 eV Core-core repulsion = 16085.147862 eV Total energy + Delta-G solvation = -3149.299488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.13860 -39.00606 -37.45169 -36.60069 -34.86259 -33.73728 -31.78394 -30.95797 -28.49290 -27.33716 -26.80133 -24.43022 -23.67704 -22.92803 -22.64634 -21.18688 -18.87597 -17.69729 -17.58026 -17.31475 -16.90567 -16.52970 -16.46735 -15.88188 -15.82943 -15.38717 -15.09849 -14.70366 -14.38604 -14.14325 -13.81824 -13.58232 -13.16439 -12.92357 -12.72548 -12.55519 -12.48972 -12.42728 -12.26983 -12.19902 -11.91412 -11.82094 -11.54919 -11.45507 -10.84054 -10.62167 -10.52062 -10.03504 -9.34016 -8.26377 -6.40933 0.77838 1.41828 1.45655 1.53196 1.59148 1.63543 2.39696 2.96339 3.08768 3.13369 3.56687 3.84099 4.09612 4.15202 4.16213 4.23911 4.26916 4.31777 4.48079 4.56038 4.56986 4.59080 4.62646 4.68658 4.70869 4.83577 4.93302 4.95151 5.11374 5.17991 5.30242 5.38284 5.46558 5.61040 5.79854 6.00248 6.05362 6.34615 6.52957 6.75377 7.30280 7.63018 8.85994 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.068190 B = 0.002333 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.520543 B =11998.424254 C =12158.648626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.065 3.935 4 C 0.057 3.943 5 N -0.685 5.685 6 C 0.076 3.924 7 C -0.016 4.016 8 C -0.038 4.038 9 C -0.042 4.042 10 N -0.281 5.281 11 C 0.125 3.875 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.975 3.025 18 H -0.260 1.260 19 H -0.289 1.289 20 H -0.265 1.265 21 N -0.131 5.131 22 N -0.307 5.307 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.346 0.654 31 H 0.062 0.938 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.131 0.869 38 H -0.008 1.008 39 H -0.005 1.005 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.947 -0.324 10.715 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.012 4.012 4 C -0.072 4.072 5 N -0.317 5.317 6 C -0.054 4.054 7 C -0.055 4.055 8 C -0.178 4.178 9 C -0.194 4.194 10 N -0.074 5.074 11 C 0.006 3.994 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.100 0.900 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.215 1.215 20 H -0.189 1.189 21 N -0.110 5.110 22 N -0.172 5.172 23 H 0.066 0.934 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.246 0.754 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.010 0.990 39 H 0.013 0.987 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.868 0.170 11.030 25.390 hybrid contribution 0.606 0.172 -0.758 0.985 sum -22.262 0.342 10.273 24.520 Atomic orbital electron populations 1.22872 0.80234 1.03412 1.00549 1.87967 1.20632 1.28382 1.95477 1.22613 0.92659 0.84804 1.01145 1.22013 0.93966 0.98063 0.93147 1.60386 1.10016 1.56563 1.04749 1.21689 0.87431 0.98776 0.97455 1.19780 0.83897 1.03940 0.97894 1.22450 0.98628 0.89420 1.07311 1.24179 0.82697 1.03857 1.08687 1.47881 1.08908 1.07489 1.43102 1.22497 0.83658 0.91439 1.01824 1.19145 0.93935 0.96330 0.92068 1.21435 1.07300 1.09873 1.19619 0.90048 1.26072 1.01642 0.97009 0.95195 1.70137 1.36551 1.28058 1.22548 0.85344 0.77969 0.78814 0.77979 1.18429 1.21479 1.18929 1.78305 1.18581 0.93204 1.20897 1.74934 0.95366 1.28225 1.18710 0.93442 0.89218 0.93328 0.91498 0.92386 0.91123 0.92732 0.83520 0.91920 0.95869 0.89947 0.87343 0.75379 0.88247 0.85068 0.98990 0.98662 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.38 10.65 -148.98 -1.59 -8.97 16 3 C 0.06 0.88 6.22 71.98 0.45 1.33 16 4 C 0.06 0.92 6.07 86.30 0.52 1.45 16 5 N -0.69 -12.54 6.45 -513.87 -3.31 -15.85 16 6 C 0.08 1.65 5.66 86.30 0.49 2.14 16 7 C -0.02 -0.34 6.05 29.85 0.18 -0.16 16 8 C -0.04 -1.16 6.50 41.60 0.27 -0.89 16 9 C -0.04 -1.24 11.49 83.49 0.96 -0.28 16 10 N -0.28 -10.61 3.44 -347.73 -1.20 -11.81 16 11 C 0.13 4.69 6.39 86.38 0.55 5.24 16 12 C 0.02 1.19 5.10 29.85 0.15 1.34 16 13 C -0.54 -28.89 9.11 25.60 0.23 -28.65 16 14 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 16 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 17 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 21 N -0.13 -5.78 12.91 37.02 0.48 -5.30 16 22 N -0.31 -12.20 12.40 -48.59 -0.60 -12.80 16 23 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.35 5.42 8.73 -89.70 -0.78 4.64 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.91 8.12 -2.39 -0.02 1.89 16 35 H 0.23 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.13 3.94 8.07 -2.38 -0.02 3.92 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H -0.01 -0.30 8.12 -2.38 -0.02 -0.32 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -72.57 343.93 1.84 -70.73 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.23 Total: 12.38 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 5.52 Total: -16.51 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -4.35 Total: -102.04 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -1.59 Total: -8.97 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -72.57 1.84 -70.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331858205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.123 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds