Wall clock time and date at job start Mon Mar 30 2020 00:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 C 1.53007 * 109.46780 * 119.99724 * 2 1 3 5 5 H 1.08991 * 109.47085 * 59.59264 * 4 2 1 6 6 N 1.46904 * 109.46918 * 179.59226 * 4 2 1 7 7 C 1.46900 * 110.99969 * 273.73517 * 6 4 2 8 8 C 1.52994 * 109.47223 * 174.94260 * 7 6 4 9 9 H 1.09003 * 109.46752 * 60.00190 * 8 7 6 10 10 O 1.42901 * 109.47331 * 300.00012 * 8 7 6 11 11 C 1.50703 * 109.47128 * 180.02562 * 8 7 6 12 12 H 1.07997 * 119.99689 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99789 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99600 * 179.97438 * 13 11 8 15 15 Si 1.86801 * 120.00567 * 359.97438 * 13 11 8 16 16 H 1.48492 * 109.46828 * 89.99947 * 15 13 11 17 17 H 1.48492 * 109.47463 * 210.00295 * 15 13 11 18 18 H 1.48504 * 109.46459 * 330.00073 * 15 13 11 19 19 C 1.50696 * 109.47129 * 299.58809 * 4 2 1 20 20 N 1.30524 * 126.35090 * 285.03157 * 19 4 2 21 21 N 1.28594 * 109.67440 * 180.02562 * 20 19 4 22 22 C 1.30518 * 109.67347 * 359.97438 * 21 20 19 23 23 N 1.35493 * 107.30691 * 0.22770 * 22 21 20 24 24 C 1.46505 * 126.97736 * 179.77415 * 23 22 21 25 25 H 1.08994 * 109.47461 * 305.55147 * 1 2 3 26 26 H 1.09007 * 109.46658 * 65.54955 * 1 2 3 27 27 H 1.08998 * 109.47551 * 185.54658 * 1 2 3 28 28 H 1.08995 * 109.47646 * 239.99392 * 2 1 3 29 29 H 1.09000 * 109.47380 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46654 * 299.99743 * 3 2 1 31 31 H 1.09005 * 109.46924 * 59.99584 * 3 2 1 32 32 H 1.00901 * 110.99701 * 149.78111 * 6 4 2 33 33 H 1.09002 * 109.46804 * 294.94791 * 7 6 4 34 34 H 1.09002 * 109.47047 * 54.93878 * 7 6 4 35 35 H 0.96701 * 113.99883 * 299.99852 * 10 8 7 36 36 H 0.97006 * 119.99502 * 180.02562 * 14 13 11 37 37 H 1.07999 * 126.34437 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47264 * 90.03102 * 24 23 22 39 39 H 1.09004 * 109.46753 * 210.02810 * 24 23 22 40 40 H 1.08997 * 109.47051 * 330.02414 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6706 -1.7467 1.2530 6 7 3.5089 -0.7298 1.2445 7 6 4.0261 -1.8752 0.4839 8 6 5.5506 -1.7814 0.3943 9 1 5.9747 -1.7907 1.3984 10 8 5.9153 -0.5675 -0.2657 11 6 6.0811 -2.9561 -0.3865 12 1 5.3992 -3.6958 -0.7792 13 6 7.4371 -3.0870 -0.5986 14 7 7.9002 -4.1125 -1.2796 15 14 8.6168 -1.8080 0.0812 16 1 9.0437 -2.2049 1.4470 17 1 9.8070 -1.7135 -0.8016 18 1 7.9370 -0.4889 0.1387 19 6 1.5459 -0.0049 2.4797 20 7 1.9967 1.1262 2.9497 21 7 1.3460 1.4436 4.0125 22 6 0.4501 0.5296 4.2685 23 7 0.5546 -0.4181 3.3058 24 6 -0.2440 -1.6401 3.1818 25 1 -0.3634 0.5975 0.8360 26 1 -0.3633 0.4254 -0.9356 27 1 -0.3634 -1.0228 0.0993 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8736 -0.7260 2.1853 33 1 3.7479 -2.8011 0.9873 34 1 3.6019 -1.8660 -0.5202 35 1 5.5713 -0.4909 -1.1662 36 1 8.8543 -4.2048 -1.4285 37 1 -0.2430 0.5269 5.0968 38 1 -1.1280 -1.4367 2.5775 39 1 0.3525 -2.4169 2.7032 40 1 -0.5504 -1.9759 4.1724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336002987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:41 Heat of formation + Delta-G solvation = 34.362450 kcal Electronic energy + Delta-G solvation = -21401.678448 eV Core-core repulsion = 18253.331676 eV Total energy + Delta-G solvation = -3148.346772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.21315 -37.91975 -35.98033 -35.11705 -33.11186 -32.20523 -30.67928 -28.49539 -27.85489 -26.96805 -25.83258 -23.55451 -22.30063 -21.93474 -20.44700 -19.21346 -17.25422 -17.19415 -16.66193 -15.83779 -15.43678 -14.87226 -14.61066 -14.36843 -14.30011 -13.72461 -13.61854 -13.49448 -13.31838 -12.73980 -12.60420 -12.28031 -11.94770 -11.55450 -11.47621 -11.38888 -10.99422 -10.83282 -10.73047 -10.55977 -10.35437 -10.31607 -10.23870 -9.89777 -9.22258 -9.01726 -8.59822 -8.22908 -7.93829 -6.12037 -4.23711 1.72051 2.31558 2.90200 3.43172 3.53054 3.82282 4.15802 4.22050 4.35456 4.50848 4.57475 4.66692 4.83530 4.96496 5.03259 5.19813 5.23903 5.32933 5.43790 5.60530 5.73275 5.84803 5.91666 5.94572 6.00664 6.01541 6.06894 6.22250 6.29120 6.54020 6.58965 6.72508 6.90323 7.27524 7.34650 7.61155 7.75345 8.30046 8.75629 8.83955 9.15895 9.53543 10.98375 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.004857 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.325934 B = 5763.314611 C = 5874.055328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.138 4.138 4 C 0.180 3.820 5 H 0.051 0.949 6 N -0.660 5.660 7 C 0.043 3.957 8 C 0.203 3.797 9 H 0.050 0.950 10 O -0.567 6.567 11 C -0.566 4.566 12 H 0.070 0.930 13 C 0.084 3.916 14 N -0.895 5.895 15 Si 0.870 3.130 16 H -0.289 1.289 17 H -0.296 1.296 18 H -0.213 1.213 19 C 0.182 3.818 20 N -0.265 5.265 21 N -0.300 5.300 22 C 0.138 3.862 23 N -0.478 5.478 24 C 0.070 3.930 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.343 0.657 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.354 0.646 36 H 0.265 0.735 37 H 0.215 0.785 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.609 4.835 7.246 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.196 4.196 4 C 0.068 3.932 5 H 0.069 0.931 6 N -0.292 5.292 7 C -0.085 4.085 8 C 0.144 3.856 9 H 0.068 0.932 10 O -0.372 6.372 11 C -0.604 4.604 12 H 0.088 0.912 13 C -0.120 4.120 14 N -0.532 5.532 15 Si 0.697 3.303 16 H -0.216 1.216 17 H -0.223 1.223 18 H -0.135 1.135 19 C -0.085 4.085 20 N -0.105 5.105 21 N -0.140 5.140 22 C -0.149 4.149 23 N -0.169 5.169 24 C -0.073 4.073 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.074 0.926 37 H 0.231 0.769 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.296 6.547 7.382 20.787 hybrid contribution -0.789 -1.918 0.461 2.125 sum -19.085 4.629 7.842 21.146 Atomic orbital electron populations 1.21889 0.96080 1.00808 1.01737 1.21075 0.93938 0.98449 0.96396 1.21752 1.03623 0.93688 1.00514 1.19997 0.90592 0.94981 0.87650 0.93086 1.60479 1.02508 1.45860 1.20308 1.22795 0.99462 0.88821 0.97455 1.19642 0.87909 0.84093 0.93915 0.93213 1.86686 1.77325 1.42365 1.30846 1.21488 0.93395 1.08834 1.36660 0.91160 1.24976 0.98621 0.95030 0.93373 1.69964 1.14225 1.29582 1.39399 0.87030 0.79387 0.85948 0.77951 1.21578 1.22316 1.13532 1.24994 0.91171 0.95649 0.96734 1.74396 1.21123 1.10071 1.04860 1.74326 1.06137 1.23172 1.10330 1.26384 1.03369 0.88319 0.96802 1.46245 1.28924 1.20082 1.21691 1.22128 0.95976 0.84589 1.04599 0.93540 0.92148 0.93279 0.89903 0.90125 0.94218 0.92336 0.83858 0.95555 0.91156 0.80015 0.92604 0.76872 0.89895 0.89083 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.84 37.16 0.33 -1.18 16 2 C -0.08 -1.00 2.84 -90.62 -0.26 -1.26 16 3 C -0.14 -1.99 8.65 37.16 0.32 -1.67 16 4 C 0.18 2.42 2.24 -68.86 -0.15 2.26 16 5 H 0.05 0.62 6.60 -51.93 -0.34 0.28 16 6 N -0.66 -10.88 5.40 -107.95 -0.58 -11.46 16 7 C 0.04 0.80 5.05 -3.83 -0.02 0.78 16 8 C 0.20 4.63 2.56 -27.88 -0.07 4.56 16 9 H 0.05 1.19 7.57 -51.93 -0.39 0.80 16 10 O -0.57 -12.95 10.01 -35.23 -0.35 -13.30 16 11 C -0.57 -15.40 9.34 -34.44 -0.32 -15.73 16 12 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 13 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 14 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 15 Si 0.87 22.04 26.99 -169.99 -4.59 17.45 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 18 H -0.21 -5.34 5.31 56.52 0.30 -5.04 16 19 C 0.18 2.46 4.82 -154.98 -0.75 1.71 16 20 N -0.26 -4.34 10.44 32.80 0.34 -4.00 16 21 N -0.30 -4.55 12.21 29.69 0.36 -4.19 16 22 C 0.14 1.46 12.74 -89.95 -1.15 0.32 16 23 N -0.48 -4.83 3.15 -122.69 -0.39 -5.22 16 24 C 0.07 0.39 11.00 59.85 0.66 1.05 16 25 H 0.05 0.51 7.43 -51.93 -0.39 0.12 16 26 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.09 7.46 -51.93 -0.39 0.71 16 29 H 0.08 1.35 7.61 -51.93 -0.40 0.95 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.92 6.07 -51.93 -0.31 0.60 16 32 H 0.34 5.97 8.38 -39.29 -0.33 5.64 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.35 7.26 9.04 45.56 0.41 7.67 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.21 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.52 7.06 -51.93 -0.37 0.15 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -34.08 323.09 -6.57 -40.65 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.50 Total: 8.44 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.51 Total: -6.84 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.51 Total: -51.27 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.35 Total: -13.30 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.59 Total: 17.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.08 -6.57 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336002987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.015 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds