Wall clock time and date at job start Mon Mar 30 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 C 1.53007 * 109.46780 * 119.99724 * 2 1 3 5 5 H 1.08991 * 109.47085 * 59.59264 * 4 2 1 6 6 N 1.46904 * 109.46918 * 179.59226 * 4 2 1 7 7 C 1.46900 * 110.99969 * 273.73517 * 6 4 2 8 8 C 1.52994 * 109.47223 * 174.94260 * 7 6 4 9 9 H 1.09003 * 109.46752 * 60.00190 * 8 7 6 10 10 O 1.42901 * 109.47331 * 300.00012 * 8 7 6 11 11 C 1.50703 * 109.47128 * 180.02562 * 8 7 6 12 12 H 1.07997 * 119.99689 * 359.97438 * 11 8 7 13 13 C 1.37872 * 119.99789 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99600 * 179.97438 * 13 11 8 15 15 Si 1.86801 * 120.00567 * 359.97438 * 13 11 8 16 16 H 1.48492 * 109.46828 * 89.99947 * 15 13 11 17 17 H 1.48492 * 109.47463 * 210.00295 * 15 13 11 18 18 H 1.48504 * 109.46459 * 330.00073 * 15 13 11 19 19 C 1.50696 * 109.47129 * 299.58809 * 4 2 1 20 20 N 1.30524 * 126.35090 * 285.03157 * 19 4 2 21 21 N 1.28594 * 109.67440 * 180.02562 * 20 19 4 22 22 C 1.30518 * 109.67347 * 359.97438 * 21 20 19 23 23 N 1.35493 * 107.30691 * 0.22770 * 22 21 20 24 24 C 1.46505 * 126.97736 * 179.77415 * 23 22 21 25 25 H 1.08994 * 109.47461 * 305.55147 * 1 2 3 26 26 H 1.09007 * 109.46658 * 65.54955 * 1 2 3 27 27 H 1.08998 * 109.47551 * 185.54658 * 1 2 3 28 28 H 1.08995 * 109.47646 * 239.99392 * 2 1 3 29 29 H 1.09000 * 109.47380 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46654 * 299.99743 * 3 2 1 31 31 H 1.09005 * 109.46924 * 59.99584 * 3 2 1 32 32 H 1.00901 * 110.99701 * 149.78111 * 6 4 2 33 33 H 1.09002 * 109.46804 * 294.94791 * 7 6 4 34 34 H 1.09002 * 109.47047 * 54.93878 * 7 6 4 35 35 H 0.96701 * 113.99883 * 299.99852 * 10 8 7 36 36 H 0.97006 * 119.99502 * 180.02562 * 14 13 11 37 37 H 1.07999 * 126.34437 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47264 * 90.03102 * 24 23 22 39 39 H 1.09004 * 109.46753 * 210.02810 * 24 23 22 40 40 H 1.08997 * 109.47051 * 330.02414 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6706 -1.7467 1.2530 6 7 3.5089 -0.7298 1.2445 7 6 4.0261 -1.8752 0.4839 8 6 5.5506 -1.7814 0.3943 9 1 5.9747 -1.7907 1.3984 10 8 5.9153 -0.5675 -0.2657 11 6 6.0811 -2.9561 -0.3865 12 1 5.3992 -3.6958 -0.7792 13 6 7.4371 -3.0870 -0.5986 14 7 7.9002 -4.1125 -1.2796 15 14 8.6168 -1.8080 0.0812 16 1 9.0437 -2.2049 1.4470 17 1 9.8070 -1.7135 -0.8016 18 1 7.9370 -0.4889 0.1387 19 6 1.5459 -0.0049 2.4797 20 7 1.9967 1.1262 2.9497 21 7 1.3460 1.4436 4.0125 22 6 0.4501 0.5296 4.2685 23 7 0.5546 -0.4181 3.3058 24 6 -0.2440 -1.6401 3.1818 25 1 -0.3634 0.5975 0.8360 26 1 -0.3633 0.4254 -0.9356 27 1 -0.3634 -1.0228 0.0993 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8736 -0.7260 2.1853 33 1 3.7479 -2.8011 0.9873 34 1 3.6019 -1.8660 -0.5202 35 1 5.5713 -0.4909 -1.1662 36 1 8.8543 -4.2048 -1.4285 37 1 -0.2430 0.5269 5.0968 38 1 -1.1280 -1.4367 2.5775 39 1 0.3525 -2.4169 2.7032 40 1 -0.5504 -1.9759 4.1724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336002987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:40 Heat of formation + Delta-G solvation = 8.783561 kcal Electronic energy + Delta-G solvation = -21402.787632 eV Core-core repulsion = 18253.331676 eV Total energy + Delta-G solvation = -3149.455956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.11080 -39.19092 -37.60356 -35.90290 -34.46459 -34.32321 -31.73383 -30.14020 -28.48637 -27.98217 -27.27078 -25.04699 -23.19761 -22.98569 -22.10650 -20.21651 -19.24676 -18.09725 -17.52135 -17.07228 -16.78417 -16.48126 -15.99235 -15.68371 -15.46904 -15.10800 -14.88530 -14.49757 -14.30942 -14.21758 -13.64281 -13.34751 -13.30262 -13.00020 -12.93000 -12.73029 -12.48441 -12.43020 -12.01518 -11.83742 -11.72766 -11.55059 -11.24792 -11.05310 -11.00386 -10.78807 -10.25682 -10.03010 -9.27146 -8.34200 -6.47542 0.88002 1.40113 1.46733 1.59788 1.78571 1.94467 2.45841 3.04551 3.10709 3.21657 3.77016 3.84768 3.93766 3.95933 4.16303 4.30364 4.33386 4.36521 4.39933 4.52036 4.59009 4.66806 4.76431 4.86419 4.93008 5.01933 5.08065 5.08973 5.16559 5.23634 5.45266 5.48441 5.52616 5.70477 5.96523 6.10790 6.11578 6.34476 6.65484 7.26729 7.43153 7.82811 8.79617 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.004857 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.325934 B = 5763.314611 C = 5874.055328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.130 4.130 4 C 0.184 3.816 5 H 0.072 0.928 6 N -0.666 5.666 7 C 0.062 3.938 8 C 0.207 3.793 9 H 0.041 0.959 10 O -0.573 6.573 11 C -0.561 4.561 12 H 0.043 0.957 13 C 0.033 3.967 14 N -0.939 5.939 15 Si 0.933 3.067 16 H -0.289 1.289 17 H -0.298 1.298 18 H -0.208 1.208 19 C 0.175 3.825 20 N -0.310 5.310 21 N -0.354 5.354 22 C 0.160 3.840 23 N -0.471 5.471 24 C 0.060 3.940 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.336 0.664 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.365 0.635 36 H 0.266 0.734 37 H 0.261 0.739 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.931 4.897 8.213 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.187 4.187 4 C 0.072 3.928 5 H 0.089 0.911 6 N -0.297 5.297 7 C -0.067 4.067 8 C 0.148 3.852 9 H 0.059 0.941 10 O -0.379 6.379 11 C -0.599 4.599 12 H 0.061 0.939 13 C -0.167 4.167 14 N -0.578 5.578 15 Si 0.758 3.242 16 H -0.216 1.216 17 H -0.225 1.225 18 H -0.130 1.130 19 C -0.095 4.095 20 N -0.150 5.150 21 N -0.193 5.193 22 C -0.128 4.128 23 N -0.162 5.162 24 C -0.081 4.081 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.154 0.846 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.212 0.788 36 H 0.075 0.925 37 H 0.277 0.723 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.652 6.605 8.345 23.233 hybrid contribution -0.188 -1.972 0.181 1.989 sum -20.841 4.633 8.526 22.989 Atomic orbital electron populations 1.21794 0.93717 1.02153 1.01867 1.21085 0.95885 0.96935 0.95912 1.21631 1.01677 0.95148 1.00294 1.20004 0.88433 0.96154 0.88253 0.91077 1.60361 1.04925 1.44709 1.19746 1.22403 0.96337 0.89774 0.98217 1.19477 0.90855 0.82350 0.92505 0.94097 1.86624 1.77786 1.41759 1.31737 1.21825 0.92866 1.09381 1.35839 0.93879 1.25745 1.00472 0.96629 0.93880 1.70074 1.14630 1.31587 1.41533 0.86069 0.77297 0.83816 0.77005 1.21575 1.22532 1.13019 1.24790 0.92270 0.95304 0.97086 1.74282 1.22831 1.11823 1.06021 1.74217 1.08325 1.25672 1.11048 1.27216 1.02000 0.86777 0.96839 1.46443 1.28206 1.21033 1.20491 1.22536 0.95900 0.82672 1.07002 0.94264 0.91355 0.91082 0.90212 0.92929 0.93136 0.93764 0.84564 0.95224 0.90686 0.78781 0.92529 0.72324 0.87991 0.89080 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.84 71.98 0.64 -1.80 16 2 C -0.08 -1.87 2.84 -10.79 -0.03 -1.90 16 3 C -0.13 -3.70 8.65 71.98 0.62 -3.08 16 4 C 0.18 4.62 2.24 44.17 0.10 4.72 16 5 H 0.07 1.52 6.60 -2.39 -0.02 1.51 16 6 N -0.67 -21.44 5.40 -495.45 -2.67 -24.12 16 7 C 0.06 2.21 5.05 86.30 0.44 2.65 16 8 C 0.21 9.33 2.56 29.85 0.08 9.40 16 9 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 10 O -0.57 -25.65 10.01 -148.98 -1.49 -27.14 16 11 C -0.56 -30.68 9.34 25.60 0.24 -30.44 16 12 H 0.04 2.55 7.99 -2.91 -0.02 2.52 16 13 C 0.03 1.87 5.47 84.65 0.46 2.34 16 14 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 15 Si 0.93 45.98 26.99 68.60 1.85 47.84 16 16 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 17 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 18 H -0.21 -10.01 5.31 99.48 0.53 -9.48 16 19 C 0.17 4.45 4.82 137.98 0.66 5.12 16 20 N -0.31 -10.09 10.44 -50.16 -0.52 -10.61 16 21 N -0.35 -10.44 12.21 -59.99 -0.73 -11.18 16 22 C 0.16 2.94 12.74 180.11 2.30 5.24 16 23 N -0.47 -8.17 3.15 -542.07 -1.71 -9.87 16 24 C 0.06 0.42 11.00 127.77 1.41 1.83 16 25 H 0.04 0.76 7.43 -2.39 -0.02 0.74 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.96 7.46 -2.39 -0.02 1.94 16 29 H 0.05 1.77 7.61 -2.39 -0.02 1.75 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.39 6.07 -2.38 -0.01 1.37 16 32 H 0.34 11.59 8.38 -89.69 -0.75 10.84 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 2.62 7.42 -2.39 -0.02 2.60 16 35 H 0.37 14.64 9.04 -74.06 -0.67 13.97 16 36 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 37 H 0.26 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.09 0.69 7.06 -2.38 -0.02 0.67 16 40 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -75.67 323.09 1.38 -74.29 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.55 Total: 24.29 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 6.91 Total: -5.93 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -5.34 Total: -113.35 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.49 Total: -27.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.85 Total: 47.84 kcal Total: -75.67 1.38 -74.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336002987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.071 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds