Wall clock time and date at job start Mon Mar 30 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47474 * 120.00583 * 2 1 3 5 5 H 1.08993 * 109.47169 * 184.99991 * 4 2 1 6 6 N 1.46892 * 109.47237 * 64.99641 * 4 2 1 7 7 C 1.46899 * 111.00043 * 85.00104 * 6 4 2 8 8 C 1.53011 * 109.47301 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46455 * 59.99768 * 8 7 6 10 10 O 1.42896 * 109.46940 * 300.00231 * 8 7 6 11 11 C 1.50693 * 109.46929 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00600 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99820 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99581 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 119.99754 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47681 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46938 * 120.00323 * 15 13 11 18 18 H 1.48505 * 109.47030 * 239.99577 * 15 13 11 19 19 C 1.50703 * 109.46820 * 304.99839 * 4 2 1 20 20 N 1.30523 * 126.34815 * 74.97615 * 19 4 2 21 21 N 1.28592 * 109.67062 * 180.02562 * 20 19 4 22 22 C 1.30524 * 109.67571 * 359.97438 * 21 20 19 23 23 N 1.35485 * 107.30675 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.98239 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.46633 * 299.99316 * 1 2 3 26 26 H 1.08997 * 109.47678 * 59.99295 * 1 2 3 27 27 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46633 * 240.00684 * 2 1 3 29 29 H 1.08995 * 109.47072 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47309 * 300.00330 * 3 2 1 31 31 H 1.09002 * 109.47233 * 60.00424 * 3 2 1 32 32 H 1.00897 * 111.00497 * 321.04682 * 6 4 2 33 33 H 1.08996 * 109.47288 * 299.99595 * 7 6 4 34 34 H 1.09005 * 109.46976 * 60.00166 * 7 6 4 35 35 H 0.96699 * 114.00031 * 299.99829 * 10 8 7 36 36 H 0.97006 * 119.99466 * 180.02562 * 14 13 11 37 37 H 1.07998 * 126.34400 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.46950 * 90.02449 * 24 23 22 39 39 H 1.08997 * 109.47404 * 210.03030 * 24 23 22 40 40 H 1.09005 * 109.46940 * 330.02790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 3.1264 -0.6444 1.2950 6 7 1.6515 -2.1367 1.1902 7 6 2.6261 -2.9185 0.4177 8 6 2.1886 -4.3843 0.3793 9 1 1.2083 -4.4585 -0.0913 10 8 2.1172 -4.8951 1.7119 11 6 3.1888 -5.1863 -0.4127 12 1 4.0501 -4.6995 -0.8457 13 6 3.0038 -6.5418 -0.5854 14 7 1.9547 -7.1345 -0.0585 15 14 4.2439 -7.5361 -1.5665 16 1 5.3258 -6.6407 -2.0491 17 1 4.8252 -8.5942 -0.7017 18 1 3.5662 -8.1640 -2.7292 19 6 1.4392 -0.0861 2.4765 20 7 0.2119 -0.2261 2.8980 21 7 0.0432 0.4572 3.9742 22 6 1.1553 1.0637 4.2886 23 7 2.0733 0.7356 3.3477 24 6 3.4676 1.1804 3.2838 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7223 -2.2411 0.8112 33 1 2.6809 -2.5287 -0.5987 34 1 3.6064 -2.8446 0.8887 35 1 2.9558 -4.8601 2.1920 36 1 1.8248 -8.0882 -0.1797 37 1 1.3146 1.7072 5.1412 38 1 4.0983 0.4782 3.8288 39 1 3.7878 1.2241 2.2428 40 1 3.5541 2.1702 3.7323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336002989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:43 Heat of formation + Delta-G solvation = 28.205425 kcal Electronic energy + Delta-G solvation = -21300.192164 eV Core-core repulsion = 18151.578403 eV Total energy + Delta-G solvation = -3148.613761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.01672 -38.05405 -35.68368 -34.96232 -32.78981 -32.04629 -30.54783 -28.20209 -27.67580 -27.25218 -25.63542 -23.50838 -22.15470 -21.77998 -20.56135 -19.37824 -17.13439 -16.91030 -16.57406 -15.53637 -15.15994 -14.90406 -14.57988 -14.42482 -13.99820 -13.76272 -13.62410 -13.49499 -13.04175 -12.67633 -12.31520 -12.25749 -12.13149 -11.51359 -11.40916 -11.13413 -10.96342 -10.85760 -10.79827 -10.73865 -10.64897 -10.14370 -10.08545 -10.05193 -9.05258 -8.98050 -8.57537 -8.10260 -7.79268 -5.99471 -4.18541 1.92124 2.49183 3.09313 3.26580 3.34860 3.37226 4.29019 4.37309 4.41426 4.56231 4.73257 4.74881 4.82476 4.89580 5.09752 5.13831 5.22542 5.28503 5.49697 5.60233 5.69018 5.81683 5.86596 5.96744 6.06763 6.10060 6.14920 6.19507 6.32924 6.49928 6.52502 6.80336 6.90916 7.48400 7.69983 7.84936 7.91292 8.20118 8.85454 8.94352 9.47601 9.63939 11.04674 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004537 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.051533 B = 6170.593847 C = 6383.969369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.144 4.144 4 C 0.176 3.824 5 H 0.086 0.914 6 N -0.665 5.665 7 C 0.035 3.965 8 C 0.235 3.765 9 H 0.053 0.947 10 O -0.553 6.553 11 C -0.574 4.574 12 H 0.055 0.945 13 C 0.080 3.920 14 N -0.856 5.856 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.209 3.791 20 N -0.276 5.276 21 N -0.300 5.300 22 C 0.133 3.867 23 N -0.478 5.478 24 C 0.071 3.929 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.351 0.649 33 H 0.026 0.974 34 H 0.059 0.941 35 H 0.342 0.658 36 H 0.260 0.740 37 H 0.213 0.787 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 19.557 3.491 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.201 4.201 4 C 0.062 3.938 5 H 0.104 0.896 6 N -0.297 5.297 7 C -0.093 4.093 8 C 0.177 3.823 9 H 0.071 0.929 10 O -0.354 6.354 11 C -0.613 4.613 12 H 0.073 0.927 13 C -0.127 4.127 14 N -0.492 5.492 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.059 4.059 20 N -0.116 5.116 21 N -0.140 5.140 22 C -0.154 4.154 23 N -0.170 5.170 24 C -0.072 4.072 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.172 0.828 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.229 0.771 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.490 18.656 4.039 19.250 hybrid contribution 2.601 0.311 -1.246 2.900 sum 5.091 18.968 2.793 19.837 Atomic orbital electron populations 1.21899 0.93831 1.02862 1.02083 1.21823 0.97838 0.96480 0.98319 1.21828 1.00389 0.96169 1.01763 1.19863 0.97817 0.89679 0.86462 0.89585 1.60358 1.06996 1.03909 1.58447 1.22993 0.94653 0.97827 0.93853 1.19303 0.96775 0.84411 0.81826 0.92920 1.86589 1.34920 1.86350 1.27554 1.21645 1.09919 0.93826 1.35870 0.92676 1.25032 0.95048 0.97938 0.94645 1.70099 1.26875 1.10246 1.41950 0.86627 0.81544 0.80264 0.79973 1.19791 1.20882 1.20895 1.24818 0.90613 0.94756 0.95714 1.74279 1.13713 1.17463 1.06100 1.74264 1.21542 1.09084 1.09080 1.26295 0.86643 1.05035 0.97402 1.46158 1.12382 1.37320 1.21174 1.22098 0.78790 1.01492 1.04848 0.91288 0.93030 0.91875 0.89772 0.92865 0.92292 0.93246 0.82761 0.95575 0.92216 0.81506 0.93006 0.77075 0.89899 0.89242 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.47 37.16 0.31 -1.70 16 2 C -0.12 -1.54 2.79 -90.62 -0.25 -1.79 16 3 C -0.14 -1.42 8.80 37.16 0.33 -1.09 16 4 C 0.18 2.49 2.13 -68.87 -0.15 2.34 16 5 H 0.09 1.10 6.89 -51.93 -0.36 0.75 16 6 N -0.66 -11.99 6.10 -107.95 -0.66 -12.65 16 7 C 0.04 0.69 5.08 -3.82 -0.02 0.67 16 8 C 0.24 5.91 3.03 -27.88 -0.08 5.82 16 9 H 0.05 1.47 8.14 -51.93 -0.42 1.04 16 10 O -0.55 -14.66 12.59 -35.23 -0.44 -15.10 16 11 C -0.57 -15.52 8.76 -34.44 -0.30 -15.82 16 12 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.22 5.40 -17.82 -0.10 2.13 16 14 N -0.86 -25.48 12.84 55.43 0.71 -24.77 16 15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.21 3.09 5.18 -154.98 -0.80 2.28 16 20 N -0.28 -4.88 10.35 32.80 0.34 -4.54 16 21 N -0.30 -4.95 12.21 29.69 0.36 -4.59 16 22 C 0.13 1.58 12.74 -89.95 -1.15 0.43 16 23 N -0.48 -5.42 3.15 -122.69 -0.39 -5.81 16 24 C 0.07 0.46 10.84 59.85 0.65 1.11 16 25 H 0.07 1.03 5.98 -51.93 -0.31 0.72 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.93 6.43 -51.93 -0.33 0.60 16 28 H 0.08 1.08 7.35 -51.93 -0.38 0.70 16 29 H 0.05 0.44 7.95 -51.93 -0.41 0.03 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.51 7.38 -51.93 -0.38 0.13 16 32 H 0.35 6.63 6.56 -39.29 -0.26 6.38 16 33 H 0.03 0.49 7.36 -51.93 -0.38 0.11 16 34 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.34 8.17 9.04 45.56 0.41 8.58 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.52 7.06 -51.93 -0.37 0.15 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -34.34 326.21 -7.01 -41.35 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.27 Total: 10.84 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.56 Total: -5.62 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.37 Total: -52.35 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.44 Total: -15.10 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.34 -7.01 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336002989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.559 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds