Wall clock time and date at job start Mon Mar 30 2020 00:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47474 * 120.00583 * 2 1 3 5 5 H 1.08993 * 109.47169 * 184.99991 * 4 2 1 6 6 N 1.46892 * 109.47237 * 64.99641 * 4 2 1 7 7 C 1.46899 * 111.00043 * 85.00104 * 6 4 2 8 8 C 1.53011 * 109.47301 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46455 * 59.99768 * 8 7 6 10 10 O 1.42896 * 109.46940 * 300.00231 * 8 7 6 11 11 C 1.50693 * 109.46929 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00600 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99820 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99581 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 119.99754 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47681 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46938 * 120.00323 * 15 13 11 18 18 H 1.48505 * 109.47030 * 239.99577 * 15 13 11 19 19 C 1.50703 * 109.46820 * 304.99839 * 4 2 1 20 20 N 1.30523 * 126.34815 * 74.97615 * 19 4 2 21 21 N 1.28592 * 109.67062 * 180.02562 * 20 19 4 22 22 C 1.30524 * 109.67571 * 359.97438 * 21 20 19 23 23 N 1.35485 * 107.30675 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.98239 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.46633 * 299.99316 * 1 2 3 26 26 H 1.08997 * 109.47678 * 59.99295 * 1 2 3 27 27 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46633 * 240.00684 * 2 1 3 29 29 H 1.08995 * 109.47072 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47309 * 300.00330 * 3 2 1 31 31 H 1.09002 * 109.47233 * 60.00424 * 3 2 1 32 32 H 1.00897 * 111.00497 * 321.04682 * 6 4 2 33 33 H 1.08996 * 109.47288 * 299.99595 * 7 6 4 34 34 H 1.09005 * 109.46976 * 60.00166 * 7 6 4 35 35 H 0.96699 * 114.00031 * 299.99829 * 10 8 7 36 36 H 0.97006 * 119.99466 * 180.02562 * 14 13 11 37 37 H 1.07998 * 126.34400 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.46950 * 90.02449 * 24 23 22 39 39 H 1.08997 * 109.47404 * 210.03030 * 24 23 22 40 40 H 1.09005 * 109.46940 * 330.02790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 3.1264 -0.6444 1.2950 6 7 1.6515 -2.1367 1.1902 7 6 2.6261 -2.9185 0.4177 8 6 2.1886 -4.3843 0.3793 9 1 1.2083 -4.4585 -0.0913 10 8 2.1172 -4.8951 1.7119 11 6 3.1888 -5.1863 -0.4127 12 1 4.0501 -4.6995 -0.8457 13 6 3.0038 -6.5418 -0.5854 14 7 1.9547 -7.1345 -0.0585 15 14 4.2439 -7.5361 -1.5665 16 1 5.3258 -6.6407 -2.0491 17 1 4.8252 -8.5942 -0.7017 18 1 3.5662 -8.1640 -2.7292 19 6 1.4392 -0.0861 2.4765 20 7 0.2119 -0.2261 2.8980 21 7 0.0432 0.4572 3.9742 22 6 1.1553 1.0637 4.2886 23 7 2.0733 0.7356 3.3477 24 6 3.4676 1.1804 3.2838 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7223 -2.2411 0.8112 33 1 2.6809 -2.5287 -0.5987 34 1 3.6064 -2.8446 0.8887 35 1 2.9558 -4.8601 2.1920 36 1 1.8248 -8.0882 -0.1797 37 1 1.3146 1.7072 5.1412 38 1 4.0983 0.4782 3.8288 39 1 3.7878 1.2241 2.2428 40 1 3.5541 2.1702 3.7323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336002989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:42 Heat of formation + Delta-G solvation = 2.345676 kcal Electronic energy + Delta-G solvation = -21301.313527 eV Core-core repulsion = 18151.578403 eV Total energy + Delta-G solvation = -3149.735123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.01399 -39.31883 -37.49186 -35.84255 -34.30910 -34.04915 -31.66695 -29.88435 -28.41415 -28.23344 -27.14333 -25.09135 -23.15493 -22.82611 -22.30736 -20.41031 -18.96756 -18.11147 -17.50697 -16.80374 -16.65456 -16.17932 -16.10290 -15.83915 -15.33806 -15.25795 -14.94774 -14.25093 -14.20756 -13.82523 -13.49500 -13.45078 -13.18339 -13.02997 -12.85116 -12.75375 -12.66059 -12.41791 -12.15667 -11.96900 -11.83068 -11.72605 -11.16429 -11.02116 -10.94238 -10.70439 -10.17656 -10.02834 -9.22382 -8.11124 -6.37610 0.97834 1.41783 1.42740 1.54921 1.68584 2.02810 2.40421 3.15209 3.25229 3.42739 3.72780 3.80413 3.92531 3.96457 4.12155 4.28554 4.35135 4.41151 4.48148 4.55133 4.69181 4.70024 4.71236 4.76292 4.88863 4.96692 5.03340 5.06678 5.11775 5.24155 5.30534 5.45840 5.62957 5.76890 5.99677 6.08648 6.20761 6.39685 6.77094 7.37168 7.63900 7.91116 8.93932 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004537 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.051533 B = 6170.593847 C = 6383.969369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.135 4.135 4 C 0.179 3.821 5 H 0.106 0.894 6 N -0.680 5.680 7 C 0.059 3.941 8 C 0.231 3.769 9 H 0.013 0.987 10 O -0.573 6.573 11 C -0.582 4.582 12 H 0.066 0.934 13 C 0.023 3.977 14 N -0.903 5.903 15 Si 0.962 3.038 16 H -0.258 1.258 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.199 3.801 20 N -0.324 5.324 21 N -0.356 5.356 22 C 0.154 3.846 23 N -0.473 5.473 24 C 0.060 3.940 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.341 0.659 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.352 0.648 36 H 0.260 0.740 37 H 0.260 0.740 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.230 21.649 3.303 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.193 4.193 4 C 0.066 3.934 5 H 0.124 0.876 6 N -0.312 5.312 7 C -0.070 4.070 8 C 0.173 3.827 9 H 0.031 0.969 10 O -0.376 6.376 11 C -0.621 4.621 12 H 0.084 0.916 13 C -0.180 4.180 14 N -0.540 5.540 15 Si 0.787 3.213 16 H -0.182 1.182 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.071 4.071 20 N -0.163 5.163 21 N -0.195 5.195 22 C -0.134 4.134 23 N -0.163 5.163 24 C -0.081 4.081 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.161 0.839 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.196 0.804 36 H 0.069 0.931 37 H 0.276 0.724 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.363 20.784 3.849 21.807 hybrid contribution 1.707 -0.261 -1.106 2.050 sum 7.070 20.523 2.744 21.879 Atomic orbital electron populations 1.21831 0.95100 1.01300 1.01960 1.21771 0.96701 0.98270 0.97232 1.21758 1.01748 0.93812 1.01957 1.19931 0.98830 0.87365 0.87244 0.87608 1.60245 1.06114 1.06681 1.58117 1.22537 0.95091 0.94484 0.94913 1.19217 0.94650 0.87922 0.80880 0.96920 1.86536 1.35826 1.87029 1.28236 1.22061 1.10223 0.94300 1.35492 0.91600 1.25953 0.96907 0.99385 0.95714 1.70259 1.29219 1.10512 1.44030 0.85470 0.79129 0.78532 0.78165 1.18194 1.20750 1.20754 1.24742 0.90412 0.95604 0.96320 1.74168 1.15799 1.19069 1.07302 1.74149 1.24338 1.11197 1.09822 1.27151 0.85397 1.03319 0.97564 1.46382 1.13946 1.36118 1.19876 1.22530 0.75938 1.03486 1.06142 0.92822 0.91580 0.94186 0.89924 0.90587 0.91411 0.93733 0.83874 0.94577 0.91020 0.80421 0.93124 0.72433 0.89197 0.88265 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.47 71.98 0.61 -3.35 16 2 C -0.12 -2.81 2.79 -10.79 -0.03 -2.84 16 3 C -0.13 -2.28 8.80 71.98 0.63 -1.65 16 4 C 0.18 4.87 2.13 44.17 0.09 4.96 16 5 H 0.11 2.42 6.89 -2.39 -0.02 2.40 16 6 N -0.68 -24.73 6.10 -495.45 -3.02 -27.75 16 7 C 0.06 2.28 5.08 86.31 0.44 2.71 16 8 C 0.23 11.88 3.03 29.85 0.09 11.97 16 9 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 10 O -0.57 -31.21 12.59 -148.98 -1.88 -33.09 16 11 C -0.58 -31.46 8.76 25.60 0.22 -31.24 16 12 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 13 C 0.02 1.26 5.40 84.66 0.46 1.71 16 14 N -0.90 -55.02 12.84 21.45 0.28 -54.74 16 15 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C 0.20 5.70 5.18 137.98 0.72 6.41 16 20 N -0.32 -11.68 10.35 -50.15 -0.52 -12.20 16 21 N -0.36 -11.73 12.21 -59.99 -0.73 -12.46 16 22 C 0.15 3.31 12.74 180.11 2.30 5.60 16 23 N -0.47 -9.51 3.15 -542.07 -1.71 -11.22 16 24 C 0.06 0.53 10.84 127.77 1.38 1.92 16 25 H 0.05 1.65 5.98 -2.39 -0.01 1.64 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.25 6.43 -2.39 -0.02 1.24 16 28 H 0.08 1.99 7.35 -2.39 -0.02 1.97 16 29 H 0.08 0.95 7.95 -2.39 -0.02 0.93 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.81 7.38 -2.39 -0.02 0.79 16 32 H 0.34 13.54 6.56 -89.70 -0.59 12.95 16 33 H 0.04 1.32 7.36 -2.39 -0.02 1.30 16 34 H 0.07 2.61 8.06 -2.38 -0.02 2.59 16 35 H 0.35 17.05 9.04 -74.06 -0.67 16.38 16 36 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 37 H 0.26 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.71 7.06 -2.39 -0.02 0.70 16 40 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 Total: -1.00 -77.75 326.21 1.16 -76.59 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.20 Total: 33.63 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 6.91 Total: -3.77 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -5.70 Total: -118.38 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.88 Total: -33.09 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.75 1.16 -76.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336002989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.938 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds