Wall clock time and date at job start Mon Mar 30 2020 00:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47196 * 55.00329 * 5 4 3 7 7 N 1.46898 * 109.47386 * 295.00452 * 5 4 3 8 8 C 1.53001 * 109.46997 * 174.99904 * 5 4 3 9 9 C 1.50694 * 109.47058 * 184.99838 * 8 5 4 10 10 C 1.35349 * 126.75142 * 125.00129 * 9 8 5 11 11 N 1.35315 * 106.17955 * 180.02562 * 10 9 8 12 12 C 1.46497 * 125.86854 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47214 * 125.00381 * 12 11 10 14 14 C 1.50692 * 109.47349 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00111 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00204 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47084 * 60.00371 * 18 16 14 20 20 H 1.48507 * 109.47299 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47578 * 300.00248 * 18 16 14 22 22 N 1.28717 * 108.26016 * 0.02562 * 11 10 9 23 23 N 1.28630 * 110.17554 * 359.71688 * 22 11 10 24 24 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 26 26 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.00893 * 111.00156 * 176.04783 * 7 5 4 32 32 H 1.00908 * 110.99685 * 299.99851 * 7 5 4 33 33 H 1.08993 * 109.47488 * 305.00558 * 8 5 4 34 34 H 1.09004 * 109.46738 * 65.00719 * 8 5 4 35 35 H 1.08006 * 126.91280 * 0.03758 * 10 9 8 36 36 H 1.09011 * 109.47177 * 245.00017 * 12 11 10 37 37 H 1.08999 * 109.47371 * 5.00337 * 12 11 10 38 38 H 1.08994 * 109.46886 * 299.99970 * 13 12 11 39 39 H 1.08999 * 109.46988 * 59.99721 * 13 12 11 40 40 H 0.97001 * 120.00110 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7668 3.1537 0.8431 7 7 3.8228 3.2681 -1.2538 8 6 5.6780 2.4636 0.1277 9 6 6.2806 3.8393 0.2518 10 6 7.0949 4.2806 1.2387 11 7 7.3860 5.5679 0.9399 12 6 8.2399 6.4601 1.7279 13 6 9.3503 7.0213 0.8375 14 6 10.2283 7.9395 1.6480 15 1 10.0158 8.1058 2.6938 16 6 11.3035 8.5664 1.0548 17 7 11.5626 8.3635 -0.2186 18 14 12.3922 9.7041 2.0596 19 1 12.9954 8.9457 3.1849 20 1 13.4700 10.2489 1.1953 21 1 11.5767 10.8226 2.5973 22 7 6.7828 5.8740 -0.1552 23 7 6.1195 4.8630 -0.5940 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 4.1677 4.2162 -1.2510 32 1 4.1747 2.7576 -2.0499 33 1 5.9243 1.8777 1.0131 34 1 6.0787 1.9700 -0.7577 35 1 7.4427 3.7185 2.0928 36 1 7.6411 7.2809 2.1229 37 1 8.6828 5.9033 2.5537 38 1 9.9490 6.2005 0.4426 39 1 8.9074 7.5780 0.0117 40 1 12.3188 8.8049 -0.6360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336870419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:54 Heat of formation + Delta-G solvation = 27.779491 kcal Electronic energy + Delta-G solvation = -19677.971000 eV Core-core repulsion = 16529.338769 eV Total energy + Delta-G solvation = -3148.632230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.87609 -38.34347 -36.85680 -34.98471 -32.91968 -31.70753 -30.50062 -29.91740 -27.90409 -26.51726 -25.57953 -23.60274 -22.48325 -21.43660 -20.81770 -19.91086 -17.16258 -16.73864 -16.39842 -16.11250 -15.83606 -15.52588 -15.18423 -14.63858 -14.52857 -14.42265 -13.87193 -13.32305 -13.20364 -13.01849 -12.47354 -12.27034 -11.82744 -11.67194 -11.58763 -11.28281 -11.22264 -11.07902 -10.95146 -10.88892 -10.65104 -10.35699 -10.08412 -9.81074 -9.49930 -9.36857 -8.95597 -8.56736 -8.49633 -6.20597 -4.27868 2.03815 2.79375 2.91499 3.21604 3.27438 3.28733 3.57023 4.29246 4.45142 4.65492 4.82702 4.92126 5.03720 5.09031 5.12855 5.15569 5.17647 5.19749 5.34380 5.37541 5.41682 5.50790 5.62178 5.71852 5.78405 5.81807 5.94370 6.09843 6.14800 6.30266 6.45650 6.95953 7.00072 7.29026 7.34793 7.44566 7.65772 7.73730 8.05589 8.77056 8.92125 9.37903 10.90317 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.071531 B = 0.002591 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.345308 B =10803.061247 C =10924.161518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.399 6.399 3 C 0.067 3.933 4 C -0.108 4.108 5 C 0.101 3.899 6 H 0.079 0.921 7 N -0.845 5.845 8 C -0.062 4.062 9 C -0.039 4.039 10 C -0.055 4.055 11 N -0.267 5.267 12 C 0.111 3.889 13 C 0.016 3.984 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.068 5.068 23 N -0.291 5.291 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.361 0.639 32 H 0.336 0.664 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.183 0.817 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.023 0.977 39 H 0.037 0.963 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -14.482 3.243 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.319 6.319 3 C -0.010 4.010 4 C -0.146 4.146 5 C -0.012 4.012 6 H 0.097 0.903 7 N -0.378 5.378 8 C -0.103 4.103 9 C -0.178 4.178 10 C -0.207 4.207 11 N -0.061 5.061 12 C -0.008 4.008 13 C -0.022 4.022 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.048 5.048 23 N -0.157 5.157 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.509 -13.530 2.282 21.466 hybrid contribution 1.975 0.198 1.339 2.394 sum -14.534 -13.332 3.621 20.052 Atomic orbital electron populations 1.22689 0.81294 1.02376 0.99959 1.87828 1.19527 1.28989 1.95512 1.22493 0.93750 0.83767 1.00952 1.21524 0.93631 0.96417 1.03074 1.21280 0.91354 0.94208 0.94342 0.90311 1.59136 1.67030 1.08456 1.03128 1.20670 0.96369 0.89904 1.03355 1.21794 1.03329 0.97873 0.94822 1.23369 1.05305 0.87611 1.04452 1.47913 1.31216 1.10022 1.16916 1.22768 0.92119 0.91712 0.94191 1.19394 0.90931 0.96674 0.95208 1.20890 1.11992 1.27941 0.96448 0.92143 1.25008 0.97469 0.96602 0.94993 1.69964 1.28894 1.42788 1.10690 0.86521 0.79993 0.80871 0.79834 1.20073 1.21084 1.19988 1.78304 1.07735 1.20585 0.98170 1.74761 1.19058 0.97382 1.24488 0.89944 0.94280 0.94097 0.93822 0.91779 0.90956 0.91083 0.82175 0.85242 0.89981 0.90382 0.80013 0.89127 0.88737 0.95869 0.94420 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.40 -4.27 10.70 -35.23 -0.38 -4.65 16 3 C 0.07 0.66 5.83 37.16 0.22 0.87 16 4 C -0.11 -1.00 5.23 -26.73 -0.14 -1.14 16 5 C 0.10 1.05 2.79 -67.71 -0.19 0.86 16 6 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 7 N -0.85 -9.83 8.64 -4.67 -0.04 -9.87 16 8 C -0.06 -0.67 5.44 -27.89 -0.15 -0.82 16 9 C -0.04 -0.58 6.43 -82.78 -0.53 -1.11 16 10 C -0.06 -0.83 11.49 -17.05 -0.20 -1.02 16 11 N -0.27 -4.88 3.44 -61.26 -0.21 -5.09 16 12 C 0.11 2.07 6.39 -4.04 -0.03 2.04 16 13 C 0.02 0.39 5.10 -27.89 -0.14 0.24 16 14 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 N -0.07 -1.38 12.92 60.35 0.78 -0.61 16 23 N -0.29 -5.22 10.22 33.28 0.34 -4.88 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.67 7.75 -51.93 -0.40 0.26 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.36 4.98 6.62 -39.30 -0.26 4.72 16 32 H 0.34 3.61 9.00 -39.29 -0.35 3.26 16 33 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.18 1.99 8.06 -52.48 -0.42 1.56 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.04 1.02 8.12 -51.93 -0.42 0.60 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -30.63 337.55 -5.64 -36.27 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.47 Total: 4.67 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.46 Total: -11.42 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 1.60 Total: -45.51 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.38 Total: -4.65 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.63 -5.64 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336870419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.046 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds