Wall clock time and date at job start Mon Mar 30 2020 00:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47196 * 55.00329 * 5 4 3 7 7 N 1.46898 * 109.47386 * 295.00452 * 5 4 3 8 8 C 1.53001 * 109.46997 * 174.99904 * 5 4 3 9 9 C 1.50694 * 109.47058 * 184.99838 * 8 5 4 10 10 C 1.35349 * 126.75142 * 125.00129 * 9 8 5 11 11 N 1.35315 * 106.17955 * 180.02562 * 10 9 8 12 12 C 1.46497 * 125.86854 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47214 * 125.00381 * 12 11 10 14 14 C 1.50692 * 109.47349 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00111 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00204 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47084 * 60.00371 * 18 16 14 20 20 H 1.48507 * 109.47299 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47578 * 300.00248 * 18 16 14 22 22 N 1.28717 * 108.26016 * 0.02562 * 11 10 9 23 23 N 1.28630 * 110.17554 * 359.71688 * 22 11 10 24 24 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 26 26 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 27 27 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 28 28 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 31 31 H 1.00893 * 111.00156 * 176.04783 * 7 5 4 32 32 H 1.00908 * 110.99685 * 299.99851 * 7 5 4 33 33 H 1.08993 * 109.47488 * 305.00558 * 8 5 4 34 34 H 1.09004 * 109.46738 * 65.00719 * 8 5 4 35 35 H 1.08006 * 126.91280 * 0.03758 * 10 9 8 36 36 H 1.09011 * 109.47177 * 245.00017 * 12 11 10 37 37 H 1.08999 * 109.47371 * 5.00337 * 12 11 10 38 38 H 1.08994 * 109.46886 * 299.99970 * 13 12 11 39 39 H 1.08999 * 109.46988 * 59.99721 * 13 12 11 40 40 H 0.97001 * 120.00110 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 1 3.7668 3.1537 0.8431 7 7 3.8228 3.2681 -1.2538 8 6 5.6780 2.4636 0.1277 9 6 6.2806 3.8393 0.2518 10 6 7.0949 4.2806 1.2387 11 7 7.3860 5.5679 0.9399 12 6 8.2399 6.4601 1.7279 13 6 9.3503 7.0213 0.8375 14 6 10.2283 7.9395 1.6480 15 1 10.0158 8.1058 2.6938 16 6 11.3035 8.5664 1.0548 17 7 11.5626 8.3635 -0.2186 18 14 12.3922 9.7041 2.0596 19 1 12.9954 8.9457 3.1849 20 1 13.4700 10.2489 1.1953 21 1 11.5767 10.8226 2.5973 22 7 6.7828 5.8740 -0.1552 23 7 6.1195 4.8630 -0.5940 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8463 -0.8899 29 1 3.8567 0.6438 0.8909 30 1 3.8575 0.6435 -0.8891 31 1 4.1677 4.2162 -1.2510 32 1 4.1747 2.7576 -2.0499 33 1 5.9243 1.8777 1.0131 34 1 6.0787 1.9700 -0.7577 35 1 7.4427 3.7185 2.0928 36 1 7.6411 7.2809 2.1229 37 1 8.6828 5.9033 2.5537 38 1 9.9490 6.2005 0.4426 39 1 8.9074 7.5780 0.0117 40 1 12.3188 8.8049 -0.6360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336870419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:53 Heat of formation + Delta-G solvation = 5.543736 kcal Electronic energy + Delta-G solvation = -19678.935214 eV Core-core repulsion = 16529.338769 eV Total energy + Delta-G solvation = -3149.596445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.17592 -39.11366 -37.75911 -36.52989 -34.74687 -32.82214 -31.80855 -31.17879 -28.89223 -27.42186 -27.14733 -24.54157 -24.17032 -22.68550 -21.82047 -21.13036 -18.89837 -17.79073 -17.47830 -17.16761 -17.10079 -16.49861 -16.42930 -15.97147 -15.71027 -15.38794 -15.17734 -14.51591 -14.35590 -14.00812 -13.89997 -13.60736 -13.10731 -12.94968 -12.69979 -12.57329 -12.42571 -12.37516 -12.09700 -11.99806 -11.97135 -11.78442 -11.61862 -11.48070 -10.86003 -10.63448 -10.54250 -10.14654 -9.45000 -8.27721 -6.42294 0.75774 1.40945 1.44610 1.52147 1.56042 1.61001 2.38505 2.86150 3.07528 3.40845 3.70423 3.89758 3.98243 4.07492 4.17939 4.24845 4.28694 4.41032 4.46765 4.55241 4.55465 4.58980 4.65493 4.71326 4.83009 4.89332 4.92979 5.07538 5.21331 5.24167 5.28438 5.36889 5.45685 5.59014 5.77801 6.03689 6.30451 6.38944 6.66385 6.74118 7.29098 7.60665 8.84526 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.071531 B = 0.002591 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.345308 B =10803.061247 C =10924.161518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.068 3.932 4 C -0.100 4.100 5 C 0.107 3.893 6 H 0.072 0.928 7 N -0.850 5.850 8 C -0.057 4.057 9 C -0.041 4.041 10 C -0.045 4.045 11 N -0.279 5.279 12 C 0.125 3.875 13 C 0.024 3.976 14 C -0.544 4.544 15 H 0.081 0.919 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.260 1.260 20 H -0.289 1.289 21 H -0.265 1.265 22 N -0.127 5.127 23 N -0.302 5.302 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.348 0.652 32 H 0.339 0.661 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.130 0.870 38 H -0.009 1.009 39 H -0.005 1.005 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 -15.842 5.706 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.009 4.009 4 C -0.138 4.138 5 C -0.006 4.006 6 H 0.090 0.910 7 N -0.381 5.381 8 C -0.098 4.098 9 C -0.181 4.181 10 C -0.197 4.197 11 N -0.072 5.072 12 C 0.006 3.994 13 C -0.014 4.014 14 C -0.582 4.582 15 H 0.099 0.901 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.798 3.202 19 H -0.184 1.184 20 H -0.215 1.215 21 H -0.189 1.189 22 N -0.106 5.106 23 N -0.168 5.168 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.009 0.991 39 H 0.014 0.986 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.800 -14.900 4.749 22.953 hybrid contribution 1.956 0.512 0.538 2.093 sum -14.844 -14.388 5.286 21.338 Atomic orbital electron populations 1.22877 0.79923 1.03618 1.00538 1.87792 1.21151 1.29269 1.95607 1.22467 0.94205 0.83613 1.00588 1.21446 0.93105 0.95505 1.03767 1.21249 0.91316 0.94646 0.93399 0.91016 1.59142 1.67134 1.07838 1.04021 1.20810 0.96067 0.87847 1.05090 1.22498 1.02968 0.98693 0.93961 1.24176 1.03991 0.86190 1.05319 1.47847 1.31394 1.11229 1.16769 1.22486 0.90626 0.92916 0.93372 1.19131 0.92176 0.95154 0.94943 1.21430 1.11812 1.27492 0.97496 0.90072 1.26065 0.99362 0.98477 0.96004 1.70132 1.29782 1.44480 1.12876 0.85357 0.77763 0.78792 0.78271 1.18427 1.21517 1.18921 1.78314 1.10072 1.22268 0.99962 1.74731 1.18774 0.98018 1.25246 0.88459 0.93477 0.93749 0.93564 0.92801 0.89536 0.91041 0.83649 0.84841 0.86789 0.89993 0.75550 0.88240 0.85163 0.99063 0.98634 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.32 10.70 -148.98 -1.59 -9.92 16 3 C 0.07 1.24 5.83 71.98 0.42 1.66 16 4 C -0.10 -1.64 5.23 30.60 0.16 -1.48 16 5 C 0.11 2.03 2.79 44.92 0.13 2.16 16 6 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 7 N -0.85 -19.35 8.64 -168.68 -1.46 -20.81 16 8 C -0.06 -1.08 5.44 29.85 0.16 -0.92 16 9 C -0.04 -1.16 6.43 41.59 0.27 -0.89 16 10 C -0.04 -1.22 11.49 83.49 0.96 -0.26 16 11 N -0.28 -10.00 3.44 -347.72 -1.20 -11.20 16 12 C 0.13 4.54 6.39 86.38 0.55 5.09 16 13 C 0.02 1.20 5.10 29.85 0.15 1.35 16 14 C -0.54 -28.48 9.11 25.60 0.23 -28.24 16 15 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 18 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 N -0.13 -5.29 12.92 37.02 0.48 -4.82 16 23 N -0.30 -10.91 10.22 -48.61 -0.50 -11.41 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 1.08 7.75 -2.39 -0.02 1.07 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.35 9.68 6.62 -89.70 -0.59 9.08 16 32 H 0.34 7.15 9.00 -89.69 -0.81 6.35 16 33 H 0.11 1.46 8.12 -2.39 -0.02 1.44 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.23 3.84 8.06 -2.91 -0.02 3.81 16 36 H 0.10 3.40 8.14 -2.38 -0.02 3.39 16 37 H 0.13 3.76 8.07 -2.39 -0.02 3.74 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.00 -0.28 8.12 -2.39 -0.02 -0.30 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.25 337.55 2.42 -66.83 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.37 Total: 22.56 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.74 Total: -19.48 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -2.39 Total: -103.96 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.59 Total: -9.92 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -69.25 2.42 -66.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336870419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.374 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds