Wall clock time and date at job start Mon Mar 30 2020 00:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47318 * 2 1 4 4 C 1.46895 * 111.00494 * 66.04546 * 3 2 1 5 5 C 1.52997 * 109.47425 * 194.04973 * 4 3 2 6 6 C 1.38579 * 111.00127 * 190.00040 * 3 2 1 7 7 N 1.31214 * 126.47146 * 294.97526 * 6 3 2 8 8 N 1.28533 * 109.85833 * 179.82080 * 7 6 3 9 9 C 1.30291 * 110.05397 * 0.44629 * 8 7 6 10 10 C 1.50698 * 126.34676 * 179.68860 * 9 8 7 11 11 C 1.52993 * 109.47594 * 270.04733 * 10 9 8 12 12 H 1.09003 * 109.47082 * 54.99916 * 11 10 9 13 13 O 1.42903 * 109.46941 * 295.00136 * 11 10 9 14 14 C 1.50703 * 109.47303 * 174.99869 * 11 10 9 15 15 H 1.07992 * 120.00075 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99735 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00508 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99805 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46984 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46966 * 120.00197 * 18 16 14 21 21 H 1.48496 * 109.47567 * 240.00543 * 18 16 14 22 22 N 1.36456 * 126.47377 * 115.27793 * 6 3 2 23 23 C 1.46502 * 127.13487 * 359.97438 * 22 6 3 24 24 H 1.08999 * 109.47222 * 59.99971 * 1 2 3 25 25 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47081 * 300.00356 * 1 2 3 27 27 H 1.09006 * 109.46842 * 119.99489 * 2 1 3 28 28 H 1.08997 * 109.47093 * 239.99463 * 2 1 3 29 29 H 1.09007 * 109.46738 * 314.04861 * 4 3 2 30 30 H 1.08990 * 109.47254 * 74.04759 * 4 3 2 31 31 H 1.09006 * 109.47435 * 58.48232 * 5 4 3 32 32 H 1.09000 * 109.47565 * 178.47994 * 5 4 3 33 33 H 1.08998 * 109.47106 * 298.48625 * 5 4 3 34 34 H 1.09007 * 109.46728 * 30.04986 * 10 9 8 35 35 H 1.09000 * 109.46947 * 150.04416 * 10 9 8 36 36 H 0.96699 * 114.00062 * 299.99334 * 13 11 10 37 37 H 0.97000 * 120.00258 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47180 * 86.90106 * 23 22 6 39 39 H 1.09007 * 109.46525 * 206.89431 * 23 22 6 40 40 H 1.08994 * 109.47112 * 326.89189 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0670 1.2532 5 6 1.8747 3.5742 1.0878 6 6 3.3864 1.4285 -0.2247 7 7 4.3219 0.9530 0.5631 8 7 5.4786 1.1625 0.0433 9 6 5.3512 1.7872 -1.0930 10 6 6.4704 2.2193 -2.0050 11 6 6.9218 3.6309 -1.6250 12 1 7.1883 3.6551 -0.5683 13 8 5.8578 4.5531 -1.8691 14 6 8.1200 4.0154 -2.4542 15 1 8.5194 3.3225 -3.1799 16 6 8.7058 5.2523 -2.2870 17 7 8.2192 6.0965 -1.4036 18 14 10.1915 5.7287 -3.3143 19 1 10.5408 4.6110 -4.2275 20 1 9.8731 6.9392 -4.1134 21 1 11.3412 6.0148 -2.4191 22 7 4.0139 1.9789 -1.3041 23 6 3.3852 2.6379 -2.4516 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 0.6270 1.8664 1.4973 30 1 2.3084 1.6998 2.0568 31 1 1.2566 3.9368 0.2665 32 1 1.5898 4.0828 2.0088 33 1 2.9233 3.7769 0.8702 34 1 7.3087 1.5300 -1.9032 35 1 6.1201 2.2154 -3.0371 36 1 5.5684 4.5847 -2.7912 37 1 8.6316 6.9665 -1.2857 38 1 3.2305 3.6927 -2.2249 39 1 4.0326 2.5448 -3.3236 40 1 2.4249 2.1663 -2.6601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338535497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:26 Heat of formation + Delta-G solvation = 30.607872 kcal Electronic energy + Delta-G solvation = -21390.381507 eV Core-core repulsion = 18241.871925 eV Total energy + Delta-G solvation = -3148.509583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.51791 -38.04314 -36.15031 -34.39822 -32.19658 -32.00294 -31.54111 -29.66445 -27.49969 -27.03428 -25.27532 -23.37978 -22.58443 -21.71199 -20.11728 -19.73669 -17.30960 -16.86334 -16.38698 -15.76942 -15.09860 -14.77886 -14.64949 -14.33194 -14.05919 -13.82998 -13.28125 -13.01134 -12.80519 -12.67354 -12.41453 -12.29565 -11.99382 -11.66361 -11.41742 -11.34864 -11.16805 -11.05037 -10.88347 -10.81534 -10.74695 -10.17823 -10.12928 -9.68866 -9.31203 -8.74392 -8.65690 -8.60398 -8.07940 -6.06496 -4.26175 2.17311 2.62292 3.24274 3.30761 3.33312 3.36402 3.83169 4.34217 4.72756 4.91073 5.01104 5.04251 5.10743 5.20413 5.25980 5.28446 5.39195 5.49109 5.51349 5.56393 5.60822 5.70922 5.78677 5.88422 5.99170 6.10315 6.14070 6.24352 6.28552 6.38372 6.43947 6.68376 6.74262 6.97813 7.55444 7.64472 7.77292 8.06487 8.75963 9.21787 9.24869 9.50231 10.97652 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036843 B = 0.004512 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.789731 B = 6204.104072 C = 6392.458857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 N -0.463 5.463 4 C 0.058 3.942 5 C -0.148 4.148 6 C 0.323 3.677 7 N -0.316 5.316 8 N -0.302 5.302 9 C 0.220 3.780 10 C -0.064 4.064 11 C 0.238 3.762 12 H 0.063 0.937 13 O -0.562 6.562 14 C -0.574 4.574 15 H 0.060 0.940 16 C 0.081 3.919 17 N -0.857 5.857 18 Si 0.891 3.109 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 N -0.459 5.459 23 C 0.087 3.913 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.340 0.660 37 H 0.261 0.739 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 -8.006 -1.184 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 N -0.189 5.189 4 C -0.069 4.069 5 C -0.206 4.206 6 C -0.033 4.033 7 N -0.160 5.160 8 N -0.142 5.142 9 C -0.047 4.047 10 C -0.104 4.104 11 C 0.179 3.821 12 H 0.081 0.919 13 O -0.364 6.364 14 C -0.612 4.612 15 H 0.078 0.922 16 C -0.126 4.126 17 N -0.492 5.492 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 N -0.150 5.150 23 C -0.057 4.057 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.183 0.817 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.130 -8.153 0.349 17.190 hybrid contribution 0.551 0.539 -1.649 1.820 sum -14.579 -7.614 -1.299 16.499 Atomic orbital electron populations 1.21843 0.94121 1.01896 1.02672 1.22084 0.95803 0.86655 1.01988 1.58735 1.05526 1.17411 1.37231 1.22223 1.01183 0.94836 0.88636 1.21755 1.02660 0.94316 1.01880 1.22080 0.91230 1.01714 0.88314 1.74431 0.95451 1.21595 1.24533 1.74017 1.15949 1.17645 1.06582 1.25302 0.83593 0.98673 0.97145 1.21221 0.91839 1.02797 0.94523 1.19410 0.84961 0.79901 0.97824 0.91880 1.86639 1.55176 1.65687 1.28930 1.21610 1.14630 1.01501 1.23429 0.92191 1.25037 0.96496 0.96392 0.94675 1.70093 1.39264 1.07330 1.32500 0.86580 0.82786 0.78511 0.80292 1.19599 1.20914 1.20806 1.46079 1.07063 1.43418 1.18482 1.21935 0.98508 0.98797 0.86411 0.91769 0.91819 0.92239 0.93162 0.90917 0.89638 0.92874 0.92014 0.91863 0.92531 0.88538 0.91051 0.81680 0.92938 0.89685 0.89613 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.87 37.16 0.37 -0.82 16 2 C 0.06 0.70 5.61 -3.83 -0.02 0.68 16 3 N -0.46 -6.25 4.51 -174.52 -0.79 -7.04 16 4 C 0.06 0.73 5.53 -3.83 -0.02 0.70 16 5 C -0.15 -1.94 9.92 37.16 0.37 -1.57 16 6 C 0.32 5.59 5.50 -318.88 -1.75 3.84 16 7 N -0.32 -6.48 11.95 30.31 0.36 -6.12 16 8 N -0.30 -6.70 12.18 32.99 0.40 -6.30 16 9 C 0.22 4.43 7.09 -154.02 -1.09 3.33 16 10 C -0.06 -1.26 5.20 -27.89 -0.15 -1.41 16 11 C 0.24 5.83 2.81 -27.89 -0.08 5.75 16 12 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 13 O -0.56 -13.49 12.29 -35.23 -0.43 -13.92 16 14 C -0.57 -15.09 8.76 -34.44 -0.30 -15.39 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 17 N -0.86 -24.93 12.84 55.43 0.71 -24.22 16 18 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 N -0.46 -7.87 3.21 -121.46 -0.39 -8.26 16 23 C 0.09 1.12 10.88 59.85 0.65 1.77 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.45 6.31 -51.92 -0.33 0.12 16 27 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 29 H 0.09 0.82 5.98 -51.92 -0.31 0.51 16 30 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.96 7.57 -51.93 -0.39 0.56 16 34 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 35 H 0.07 1.23 7.21 -51.93 -0.37 0.86 16 36 H 0.34 6.96 9.04 45.56 0.41 7.37 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.98 7.16 -51.93 -0.37 0.61 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -32.73 332.88 -7.80 -40.53 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.54 Total: 5.72 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.12 Total: -1.02 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.30 Total: -51.92 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.43 Total: -13.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.73 -7.80 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338535497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.134 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds