Wall clock time and date at job start Mon Mar 30 2020 00:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47318 * 2 1 4 4 C 1.46895 * 111.00494 * 66.04546 * 3 2 1 5 5 C 1.52997 * 109.47425 * 194.04973 * 4 3 2 6 6 C 1.38579 * 111.00127 * 190.00040 * 3 2 1 7 7 N 1.31214 * 126.47146 * 294.97526 * 6 3 2 8 8 N 1.28533 * 109.85833 * 179.82080 * 7 6 3 9 9 C 1.30291 * 110.05397 * 0.44629 * 8 7 6 10 10 C 1.50698 * 126.34676 * 179.68860 * 9 8 7 11 11 C 1.52993 * 109.47594 * 270.04733 * 10 9 8 12 12 H 1.09003 * 109.47082 * 54.99916 * 11 10 9 13 13 O 1.42903 * 109.46941 * 295.00136 * 11 10 9 14 14 C 1.50703 * 109.47303 * 174.99869 * 11 10 9 15 15 H 1.07992 * 120.00075 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99735 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00508 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99805 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46984 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46966 * 120.00197 * 18 16 14 21 21 H 1.48496 * 109.47567 * 240.00543 * 18 16 14 22 22 N 1.36456 * 126.47377 * 115.27793 * 6 3 2 23 23 C 1.46502 * 127.13487 * 359.97438 * 22 6 3 24 24 H 1.08999 * 109.47222 * 59.99971 * 1 2 3 25 25 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47081 * 300.00356 * 1 2 3 27 27 H 1.09006 * 109.46842 * 119.99489 * 2 1 3 28 28 H 1.08997 * 109.47093 * 239.99463 * 2 1 3 29 29 H 1.09007 * 109.46738 * 314.04861 * 4 3 2 30 30 H 1.08990 * 109.47254 * 74.04759 * 4 3 2 31 31 H 1.09006 * 109.47435 * 58.48232 * 5 4 3 32 32 H 1.09000 * 109.47565 * 178.47994 * 5 4 3 33 33 H 1.08998 * 109.47106 * 298.48625 * 5 4 3 34 34 H 1.09007 * 109.46728 * 30.04986 * 10 9 8 35 35 H 1.09000 * 109.46947 * 150.04416 * 10 9 8 36 36 H 0.96699 * 114.00062 * 299.99334 * 13 11 10 37 37 H 0.97000 * 120.00258 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47180 * 86.90106 * 23 22 6 39 39 H 1.09007 * 109.46525 * 206.89431 * 23 22 6 40 40 H 1.08994 * 109.47112 * 326.89189 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0670 1.2532 5 6 1.8747 3.5742 1.0878 6 6 3.3864 1.4285 -0.2247 7 7 4.3219 0.9530 0.5631 8 7 5.4786 1.1625 0.0433 9 6 5.3512 1.7872 -1.0930 10 6 6.4704 2.2193 -2.0050 11 6 6.9218 3.6309 -1.6250 12 1 7.1883 3.6551 -0.5683 13 8 5.8578 4.5531 -1.8691 14 6 8.1200 4.0154 -2.4542 15 1 8.5194 3.3225 -3.1799 16 6 8.7058 5.2523 -2.2870 17 7 8.2192 6.0965 -1.4036 18 14 10.1915 5.7287 -3.3143 19 1 10.5408 4.6110 -4.2275 20 1 9.8731 6.9392 -4.1134 21 1 11.3412 6.0148 -2.4191 22 7 4.0139 1.9789 -1.3041 23 6 3.3852 2.6379 -2.4516 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 0.6270 1.8664 1.4973 30 1 2.3084 1.6998 2.0568 31 1 1.2566 3.9368 0.2665 32 1 1.5898 4.0828 2.0088 33 1 2.9233 3.7769 0.8702 34 1 7.3087 1.5300 -1.9032 35 1 6.1201 2.2154 -3.0371 36 1 5.5684 4.5847 -2.7912 37 1 8.6316 6.9665 -1.2857 38 1 3.2305 3.6927 -2.2249 39 1 4.0326 2.5448 -3.3236 40 1 2.4249 2.1663 -2.6601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338535497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:25 Heat of formation + Delta-G solvation = 7.747588 kcal Electronic energy + Delta-G solvation = -21391.372804 eV Core-core repulsion = 18241.871925 eV Total energy + Delta-G solvation = -3149.500879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.96253 -39.15526 -38.01084 -35.78718 -34.25833 -33.21177 -32.81660 -30.94669 -29.04625 -28.20195 -27.11542 -24.43111 -23.75154 -23.41289 -21.57904 -21.07011 -19.14901 -18.19971 -17.69299 -17.08080 -16.66996 -16.43606 -16.09687 -15.75925 -15.48079 -15.14495 -14.76268 -14.56923 -14.23247 -13.68960 -13.33977 -13.31220 -13.23797 -12.95136 -12.91804 -12.76295 -12.60039 -12.55407 -12.49895 -12.35721 -12.00328 -11.71429 -11.58314 -11.26192 -10.98238 -10.72152 -10.46229 -9.91006 -9.76222 -8.13416 -6.39951 0.76657 1.35191 1.42610 1.45064 1.56568 1.78581 2.40765 2.71145 3.13655 3.47033 3.78140 3.87631 4.01977 4.09095 4.17070 4.22991 4.30259 4.40212 4.43782 4.47864 4.55499 4.57984 4.69272 4.72779 4.77468 4.95815 4.99665 5.00301 5.04964 5.16076 5.20235 5.35747 5.61557 5.62586 5.70659 5.72719 6.02777 6.27600 6.72424 7.33549 7.52895 7.72691 8.91523 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036843 B = 0.004512 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.789731 B = 6204.104072 C = 6392.458857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 N -0.455 5.455 4 C 0.058 3.942 5 C -0.142 4.142 6 C 0.340 3.660 7 N -0.353 5.353 8 N -0.342 5.342 9 C 0.206 3.794 10 C -0.046 4.046 11 C 0.245 3.755 12 H 0.007 0.993 13 O -0.574 6.574 14 C -0.581 4.581 15 H 0.072 0.928 16 C 0.026 3.974 17 N -0.902 5.902 18 Si 0.963 3.037 19 H -0.257 1.257 20 H -0.278 1.278 21 H -0.286 1.286 22 N -0.456 5.456 23 C 0.079 3.921 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.008 0.992 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.357 0.643 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 -8.497 -3.015 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 N -0.182 5.182 4 C -0.068 4.068 5 C -0.200 4.200 6 C -0.018 4.018 7 N -0.197 5.197 8 N -0.182 5.182 9 C -0.063 4.063 10 C -0.086 4.086 11 C 0.186 3.814 12 H 0.025 0.975 13 O -0.378 6.378 14 C -0.619 4.619 15 H 0.090 0.910 16 C -0.177 4.177 17 N -0.539 5.539 18 Si 0.787 3.213 19 H -0.181 1.181 20 H -0.204 1.204 21 H -0.212 1.212 22 N -0.147 5.147 23 C -0.062 4.062 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.989 -8.661 -1.510 19.129 hybrid contribution 1.001 0.680 -1.036 1.593 sum -15.988 -7.980 -2.546 18.050 Atomic orbital electron populations 1.21799 0.90944 1.03354 1.03388 1.22222 0.98214 0.85021 1.01252 1.59080 1.02694 1.18869 1.37559 1.22328 1.02934 0.94126 0.87449 1.21720 0.99730 0.95133 1.03374 1.22549 0.92433 0.99392 0.87418 1.74334 0.95699 1.23742 1.25960 1.73896 1.17399 1.19136 1.07803 1.25186 0.84914 0.99269 0.96889 1.20916 0.92046 0.99501 0.96174 1.19041 0.85222 0.82595 0.94536 0.97506 1.86570 1.54794 1.65972 1.30481 1.22025 1.15030 1.01586 1.23259 0.90990 1.25921 0.99450 0.96517 0.95766 1.70247 1.41214 1.07838 1.34615 0.85463 0.78714 0.78496 0.78600 1.18114 1.20415 1.21197 1.46270 1.06135 1.42923 1.19372 1.22269 0.99982 0.98503 0.85433 0.91138 0.90066 0.91310 0.94319 0.91386 0.85688 0.95059 0.90559 0.90082 0.97233 0.88772 0.87715 0.79740 0.93085 0.90035 0.87817 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.87 71.98 0.71 -1.02 16 2 C 0.06 1.23 5.61 86.30 0.48 1.72 16 3 N -0.45 -11.61 4.51 -706.06 -3.18 -14.79 16 4 C 0.06 1.37 5.53 86.30 0.48 1.84 16 5 C -0.14 -3.58 9.92 71.98 0.71 -2.87 16 6 C 0.34 11.71 5.50 260.11 1.43 13.14 16 7 N -0.35 -14.95 11.95 -58.01 -0.69 -15.64 16 8 N -0.34 -15.78 12.18 -49.54 -0.60 -16.38 16 9 C 0.21 8.41 7.09 137.64 0.98 9.39 16 10 C -0.05 -1.84 5.20 29.85 0.16 -1.68 16 11 C 0.24 12.27 2.81 29.85 0.08 12.35 16 12 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 13 O -0.57 -27.84 12.29 -148.98 -1.83 -29.67 16 14 C -0.58 -30.53 8.76 25.60 0.22 -30.31 16 15 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 16 C 0.03 1.41 5.40 84.65 0.46 1.87 16 17 N -0.90 -53.64 12.84 21.45 0.28 -53.37 16 18 Si 0.96 42.23 29.54 68.60 2.03 44.26 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 22 N -0.46 -15.40 3.21 -538.19 -1.73 -17.13 16 23 C 0.08 1.88 10.88 127.77 1.39 3.27 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.75 6.31 -2.38 -0.02 0.74 16 27 H 0.04 0.90 8.12 -2.38 -0.02 0.88 16 28 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 29 H 0.13 1.99 5.98 -2.38 -0.01 1.97 16 30 H 0.03 0.88 7.83 -2.39 -0.02 0.87 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 34 H 0.09 3.75 8.14 -2.38 -0.02 3.73 16 35 H 0.10 3.39 7.21 -2.39 -0.02 3.38 16 36 H 0.36 14.33 9.04 -74.06 -0.67 13.66 16 37 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.08 7.16 -2.38 -0.02 2.06 16 40 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.98 332.88 1.73 -72.24 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.36 Total: 22.76 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 7.11 Total: 7.71 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -5.93 Total: -117.31 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.83 Total: -29.67 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -73.98 1.73 -72.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338535497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.990 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds