Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 N 1.46900 * 109.47055 * 180.02562 * 3 2 1 5 5 C 1.46897 * 110.99883 * 293.95237 * 4 3 2 6 6 C 1.38583 * 111.00026 * 169.99963 * 4 3 2 7 7 N 1.31225 * 126.47236 * 55.78058 * 6 4 3 8 8 N 1.28529 * 109.85916 * 179.97438 * 7 6 4 9 9 C 1.30302 * 110.05410 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.34597 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46737 * 89.97842 * 10 9 8 12 12 H 1.08996 * 109.47169 * 54.99467 * 11 10 9 13 13 O 1.42898 * 109.46896 * 294.99722 * 11 10 9 14 14 C 1.50698 * 109.46882 * 175.00005 * 11 10 9 15 15 H 1.08003 * 119.99718 * 359.97438 * 14 11 10 16 16 C 1.37869 * 119.99947 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00076 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00342 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47402 * 89.99760 * 18 16 14 20 20 H 1.48499 * 109.47295 * 210.00131 * 18 16 14 21 21 H 1.48509 * 109.46905 * 330.00034 * 18 16 14 22 22 N 1.36458 * 126.47405 * 235.46560 * 6 4 3 23 23 C 1.46493 * 127.13170 * 0.04217 * 22 6 4 24 24 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46961 * 300.00269 * 1 2 3 26 26 H 1.09001 * 109.47439 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.47257 * 240.00177 * 2 1 3 28 28 H 1.08993 * 109.47161 * 120.00089 * 2 1 3 29 29 H 1.09009 * 109.47453 * 299.99767 * 3 2 1 30 30 H 1.08995 * 109.47577 * 60.00036 * 3 2 1 31 31 H 1.08996 * 109.47325 * 66.65869 * 5 4 3 32 32 H 1.09006 * 109.47234 * 186.66345 * 5 4 3 33 33 H 1.09007 * 109.47163 * 306.66046 * 5 4 3 34 34 H 1.08997 * 109.46846 * 209.97552 * 10 9 8 35 35 H 1.08996 * 109.47217 * 329.97877 * 10 9 8 36 36 H 0.96702 * 114.00396 * 300.00362 * 13 11 10 37 37 H 0.97005 * 119.99938 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47404 * 95.19262 * 23 22 6 39 39 H 1.09009 * 109.46413 * 215.18917 * 23 22 6 40 40 H 1.09002 * 109.47338 * 335.18560 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0359 0.8856 1.2524 6 6 4.0055 2.7167 -0.2253 7 7 3.7313 3.7947 0.4709 8 7 4.3659 4.8013 -0.0150 9 6 5.0762 4.4285 -1.0418 10 6 5.9599 5.3116 -1.8845 11 6 7.3724 5.3293 -1.2967 12 1 7.7403 4.3075 -1.2044 13 8 7.3439 5.9437 -0.0068 14 6 8.2849 6.1117 -2.2057 15 1 7.8963 6.5519 -3.1121 16 6 9.6158 6.2655 -1.8801 17 7 10.0890 5.7291 -0.7765 18 14 10.7468 7.2360 -3.0063 19 1 10.7394 8.6652 -2.6034 20 1 12.1277 6.6996 -2.9028 21 1 10.2724 7.1145 -4.4084 22 7 4.8766 3.0861 -1.2086 23 6 5.4711 2.2241 -2.2330 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.7860 -0.1737 1.3126 32 1 5.1191 1.0053 1.2761 33 1 3.5936 1.4119 2.0983 34 1 5.9949 4.9247 -2.9029 35 1 5.5577 6.3246 -1.8944 36 1 7.0259 6.8569 -0.0130 37 1 11.0253 5.8376 -0.5473 38 1 4.8771 2.2808 -3.1452 39 1 6.4886 2.5554 -2.4408 40 1 5.4902 1.1946 -1.8753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338536549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = 27.174725 kcal Electronic energy + Delta-G solvation = -20904.812769 eV Core-core repulsion = 17756.154314 eV Total energy + Delta-G solvation = -3148.658455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51725 -37.94753 -36.01877 -34.52703 -33.45287 -32.17178 -31.08150 -28.24068 -27.31292 -27.16899 -25.47927 -24.73453 -21.81761 -21.40997 -20.32322 -19.99090 -17.24191 -16.74331 -16.29159 -15.98174 -15.30609 -14.89138 -14.63701 -14.33042 -13.98034 -13.70017 -13.37224 -13.17894 -13.06864 -12.72740 -12.47697 -12.25954 -12.13950 -11.76864 -11.33778 -11.26651 -11.14716 -11.09734 -10.90434 -10.83273 -10.76763 -10.24092 -10.06612 -9.73469 -9.28176 -8.78729 -8.66009 -8.57917 -8.02831 -6.06799 -4.27025 2.13200 2.57396 3.24616 3.30986 3.32319 3.35171 3.81727 4.33348 4.68690 4.80999 4.93078 5.03101 5.06409 5.16013 5.20639 5.29849 5.32664 5.38592 5.48293 5.54953 5.59239 5.63953 5.70443 5.81882 5.85831 5.92540 6.07698 6.14287 6.29670 6.35949 6.46387 6.64055 6.66472 6.95497 7.50228 7.58482 7.76056 8.06473 8.75828 9.21797 9.37752 9.53342 10.97147 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.003894 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.585321 B = 7188.496407 C = 7250.486158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.069 3.931 4 N -0.465 5.465 5 C 0.033 3.967 6 C 0.317 3.683 7 N -0.313 5.313 8 N -0.289 5.289 9 C 0.219 3.781 10 C -0.066 4.066 11 C 0.241 3.759 12 H 0.051 0.949 13 O -0.558 6.558 14 C -0.576 4.576 15 H 0.059 0.941 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.468 5.468 23 C 0.080 3.920 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.349 0.651 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.658 -11.878 -1.936 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.059 4.059 4 N -0.190 5.190 5 C -0.114 4.114 6 C -0.040 4.040 7 N -0.158 5.158 8 N -0.128 5.128 9 C -0.048 4.048 10 C -0.106 4.106 11 C 0.182 3.818 12 H 0.069 0.931 13 O -0.360 6.360 14 C -0.614 4.614 15 H 0.078 0.922 16 C -0.126 4.126 17 N -0.492 5.492 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 N -0.161 5.161 23 C -0.063 4.063 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.706 -11.954 -0.970 18.213 hybrid contribution 0.901 0.544 -1.237 1.624 sum -12.805 -11.410 -2.207 17.293 Atomic orbital electron populations 1.21722 0.95286 1.01785 1.02057 1.21549 0.95661 0.95795 1.02809 1.22197 0.83898 0.97524 1.02248 1.58614 1.09314 1.14354 1.36754 1.22458 1.00755 0.99812 0.88399 1.22149 0.97405 0.92569 0.91839 1.74484 1.21840 0.96120 1.23329 1.74021 1.09628 1.21201 1.07983 1.25343 0.99877 0.81435 0.98119 1.21251 0.96608 0.96568 0.96176 1.19276 0.85653 0.94939 0.81965 0.93138 1.86578 1.88855 1.29110 1.31470 1.21599 0.94450 1.36836 1.08500 0.92245 1.25041 0.98078 0.94811 0.94718 1.70086 1.14415 1.42081 1.22630 0.86633 0.80016 0.80410 0.81077 1.20410 1.21146 1.19770 1.46173 1.35244 1.09440 1.25246 1.22002 0.99759 0.94864 0.89671 0.92404 0.92602 0.92626 0.91129 0.91613 0.90865 0.92883 0.90153 0.91243 0.93721 0.90343 0.89107 0.80644 0.92867 0.90670 0.88796 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.02 5.86 -26.73 -0.16 -1.17 16 3 C 0.07 0.79 4.82 -3.82 -0.02 0.78 16 4 N -0.47 -6.32 4.75 -182.37 -0.87 -7.18 16 5 C 0.03 0.40 9.17 60.06 0.55 0.95 16 6 C 0.32 5.55 6.39 -318.85 -2.04 3.51 16 7 N -0.31 -6.46 12.12 30.32 0.37 -6.09 16 8 N -0.29 -6.39 12.18 32.99 0.40 -5.99 16 9 C 0.22 4.44 7.09 -154.01 -1.09 3.34 16 10 C -0.07 -1.31 5.14 -27.88 -0.14 -1.46 16 11 C 0.24 5.92 2.81 -27.88 -0.08 5.84 16 12 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 13 O -0.56 -14.74 12.48 -35.23 -0.44 -15.18 16 14 C -0.58 -15.08 8.76 -34.44 -0.30 -15.38 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 17 N -0.86 -24.94 12.84 55.43 0.71 -24.23 16 18 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 N -0.47 -8.19 3.21 -121.45 -0.39 -8.58 16 23 C 0.08 1.05 10.88 59.84 0.65 1.70 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 29 H 0.07 0.90 8.05 -51.92 -0.42 0.48 16 30 H 0.05 0.66 8.05 -51.93 -0.42 0.25 16 31 H 0.08 0.73 6.80 -51.93 -0.35 0.37 16 32 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 34 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.35 8.33 9.04 45.56 0.41 8.74 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.28 8.07 -51.92 -0.42 0.86 16 40 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -32.99 336.63 -8.23 -41.23 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.72 Total: 5.95 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.36 Total: -0.52 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.23 Total: -52.07 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.44 Total: -15.18 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.99 -8.23 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338536549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.401 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds