Wall clock time and date at job start Mon Mar 30 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47036 * 2 1 4 4 N 1.46900 * 109.47055 * 180.02562 * 3 2 1 5 5 C 1.46897 * 110.99883 * 293.95237 * 4 3 2 6 6 C 1.38583 * 111.00026 * 169.99963 * 4 3 2 7 7 N 1.31225 * 126.47236 * 55.78058 * 6 4 3 8 8 N 1.28529 * 109.85916 * 179.97438 * 7 6 4 9 9 C 1.30302 * 110.05410 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.34597 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46737 * 89.97842 * 10 9 8 12 12 H 1.08996 * 109.47169 * 54.99467 * 11 10 9 13 13 O 1.42898 * 109.46896 * 294.99722 * 11 10 9 14 14 C 1.50698 * 109.46882 * 175.00005 * 11 10 9 15 15 H 1.08003 * 119.99718 * 359.97438 * 14 11 10 16 16 C 1.37869 * 119.99947 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00076 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00342 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47402 * 89.99760 * 18 16 14 20 20 H 1.48499 * 109.47295 * 210.00131 * 18 16 14 21 21 H 1.48509 * 109.46905 * 330.00034 * 18 16 14 22 22 N 1.36458 * 126.47405 * 235.46560 * 6 4 3 23 23 C 1.46493 * 127.13170 * 0.04217 * 22 6 4 24 24 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46961 * 300.00269 * 1 2 3 26 26 H 1.09001 * 109.47439 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.47257 * 240.00177 * 2 1 3 28 28 H 1.08993 * 109.47161 * 120.00089 * 2 1 3 29 29 H 1.09009 * 109.47453 * 299.99767 * 3 2 1 30 30 H 1.08995 * 109.47577 * 60.00036 * 3 2 1 31 31 H 1.08996 * 109.47325 * 66.65869 * 5 4 3 32 32 H 1.09006 * 109.47234 * 186.66345 * 5 4 3 33 33 H 1.09007 * 109.47163 * 306.66046 * 5 4 3 34 34 H 1.08997 * 109.46846 * 209.97552 * 10 9 8 35 35 H 1.08996 * 109.47217 * 329.97877 * 10 9 8 36 36 H 0.96702 * 114.00396 * 300.00362 * 13 11 10 37 37 H 0.97005 * 119.99938 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47404 * 95.19262 * 23 22 6 39 39 H 1.09009 * 109.46413 * 215.18917 * 23 22 6 40 40 H 1.09002 * 109.47338 * 335.18560 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0359 0.8856 1.2524 6 6 4.0055 2.7167 -0.2253 7 7 3.7313 3.7947 0.4709 8 7 4.3659 4.8013 -0.0150 9 6 5.0762 4.4285 -1.0418 10 6 5.9599 5.3116 -1.8845 11 6 7.3724 5.3293 -1.2967 12 1 7.7403 4.3075 -1.2044 13 8 7.3439 5.9437 -0.0068 14 6 8.2849 6.1117 -2.2057 15 1 7.8963 6.5519 -3.1121 16 6 9.6158 6.2655 -1.8801 17 7 10.0890 5.7291 -0.7765 18 14 10.7468 7.2360 -3.0063 19 1 10.7394 8.6652 -2.6034 20 1 12.1277 6.6996 -2.9028 21 1 10.2724 7.1145 -4.4084 22 7 4.8766 3.0861 -1.2086 23 6 5.4711 2.2241 -2.2330 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.7860 -0.1737 1.3126 32 1 5.1191 1.0053 1.2761 33 1 3.5936 1.4119 2.0983 34 1 5.9949 4.9247 -2.9029 35 1 5.5577 6.3246 -1.8944 36 1 7.0259 6.8569 -0.0130 37 1 11.0253 5.8376 -0.5473 38 1 4.8771 2.2808 -3.1452 39 1 6.4886 2.5554 -2.4408 40 1 5.4902 1.1946 -1.8753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338536549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:12 Heat of formation + Delta-G solvation = 4.947704 kcal Electronic energy + Delta-G solvation = -20905.776605 eV Core-core repulsion = 17756.154314 eV Total energy + Delta-G solvation = -3149.622291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.97001 -39.03518 -37.93366 -35.90970 -34.35356 -34.22438 -32.68051 -29.87372 -28.54189 -28.11735 -27.21646 -25.87937 -23.53473 -22.48313 -21.64427 -21.39194 -19.11758 -18.10375 -17.61783 -17.20784 -16.65591 -16.38705 -16.27759 -15.79890 -15.53348 -15.14285 -14.70054 -14.46267 -14.20538 -13.94095 -13.61356 -13.25016 -13.19385 -12.96109 -12.90371 -12.81981 -12.68377 -12.59992 -12.47901 -12.06766 -11.99436 -11.60003 -11.51589 -11.25737 -11.02686 -10.71940 -10.43885 -9.96896 -9.76466 -8.12918 -6.39706 0.71969 1.29051 1.44315 1.45431 1.55594 1.79240 2.41053 2.69404 3.14299 3.47677 3.76043 3.84924 4.00423 4.09693 4.14181 4.26506 4.33232 4.40713 4.42130 4.54316 4.57341 4.59026 4.64121 4.70248 4.78333 4.84998 4.93554 4.97315 5.08935 5.18973 5.26444 5.40450 5.55734 5.59097 5.66402 5.70886 6.03345 6.21334 6.72017 7.34111 7.53971 7.71530 8.91743 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.003894 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.585321 B = 7188.496407 C = 7250.486158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.069 3.931 4 N -0.458 5.458 5 C 0.034 3.966 6 C 0.331 3.669 7 N -0.350 5.350 8 N -0.323 5.323 9 C 0.205 3.795 10 C -0.048 4.048 11 C 0.242 3.758 12 H 0.019 0.981 13 O -0.580 6.580 14 C -0.581 4.581 15 H 0.072 0.928 16 C 0.025 3.975 17 N -0.902 5.902 18 Si 0.963 3.037 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.258 1.258 22 N -0.468 5.468 23 C 0.074 3.926 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.119 0.881 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.357 0.643 37 H 0.260 0.740 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.408 -13.129 -3.541 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.057 4.057 4 N -0.184 5.184 5 C -0.113 4.113 6 C -0.026 4.026 7 N -0.194 5.194 8 N -0.163 5.163 9 C -0.064 4.064 10 C -0.088 4.088 11 C 0.183 3.817 12 H 0.037 0.963 13 O -0.384 6.384 14 C -0.619 4.619 15 H 0.091 0.909 16 C -0.177 4.177 17 N -0.539 5.539 18 Si 0.787 3.213 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.182 1.182 22 N -0.160 5.160 23 C -0.067 4.067 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.137 0.863 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.475 -13.213 -2.601 19.770 hybrid contribution 1.071 0.839 -0.704 1.532 sum -13.404 -12.373 -3.305 18.539 Atomic orbital electron populations 1.21719 0.94307 1.02767 1.01904 1.21507 0.96365 0.93291 1.03630 1.22291 0.82464 0.99757 1.01233 1.58954 1.10437 1.11635 1.37350 1.22544 0.99671 1.01815 0.87309 1.22637 0.96027 0.93337 0.90646 1.74397 1.23255 0.96936 1.24791 1.73905 1.10727 1.22660 1.08978 1.25243 1.00265 0.82747 0.98148 1.20944 0.93642 0.97284 0.96920 1.19139 0.88240 0.92934 0.81346 0.96301 1.86529 1.89264 1.29853 1.32791 1.22002 0.94815 1.36211 1.08871 0.90946 1.25930 0.99920 0.95833 0.96058 1.70242 1.14694 1.44116 1.24882 0.85512 0.77591 0.78571 0.79607 1.20219 1.21312 1.18162 1.46394 1.34888 1.08960 1.25784 1.22315 0.99632 0.94957 0.89833 0.90820 0.92842 0.92790 0.90457 0.90536 0.91755 0.94128 0.86317 0.92777 0.94630 0.87890 0.88603 0.79746 0.93081 0.87816 0.89522 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.11 -1.57 5.86 30.59 0.18 -1.39 16 3 C 0.07 1.51 4.82 86.30 0.42 1.93 16 4 N -0.46 -11.78 4.75 -730.90 -3.47 -15.25 16 5 C 0.03 0.77 9.17 127.69 1.17 1.94 16 6 C 0.33 11.47 6.39 260.10 1.66 13.13 16 7 N -0.35 -14.64 12.12 -58.00 -0.70 -15.35 16 8 N -0.32 -14.58 12.18 -49.53 -0.60 -15.18 16 9 C 0.20 8.29 7.09 137.64 0.98 9.27 16 10 C -0.05 -1.89 5.14 29.85 0.15 -1.74 16 11 C 0.24 12.05 2.81 29.85 0.08 12.14 16 12 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 13 O -0.58 -31.48 12.48 -148.98 -1.86 -33.34 16 14 C -0.58 -30.19 8.76 25.60 0.22 -29.97 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.03 1.35 5.40 84.65 0.46 1.81 16 17 N -0.90 -53.39 12.84 21.44 0.28 -53.12 16 18 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 N -0.47 -16.06 3.21 -538.16 -1.73 -17.79 16 23 C 0.07 1.81 10.88 127.77 1.39 3.20 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 0.95 6.70 -2.39 -0.02 0.93 16 29 H 0.06 1.51 8.05 -2.38 -0.02 1.49 16 30 H 0.04 0.99 8.05 -2.39 -0.02 0.97 16 31 H 0.12 1.79 6.80 -2.39 -0.02 1.77 16 32 H 0.05 1.40 8.05 -2.38 -0.02 1.38 16 33 H 0.03 0.88 8.05 -2.38 -0.02 0.86 16 34 H 0.10 3.49 7.98 -2.39 -0.02 3.47 16 35 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.36 17.50 9.04 -74.06 -0.67 16.83 16 37 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 2.27 8.07 -2.38 -0.02 2.26 16 40 H 0.11 2.26 8.11 -2.39 -0.02 2.25 16 Total: -1.00 -72.13 336.63 1.72 -70.41 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.36 Total: 26.50 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 7.43 Total: 9.22 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -6.23 Total: -116.68 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.86 Total: -33.34 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -72.13 1.72 -70.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338536549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.356 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds