Wall clock time and date at job start Mon Mar 30 2020 00:36:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42904 * 113.99609 * 2 1
4 4 C 1.53004 * 109.46441 * 179.97438 * 3 2 1
5 5 N 1.46896 * 109.47206 * 65.00448 * 4 3 2
6 6 C 1.46905 * 111.00279 * 66.04296 * 5 4 3
7 7 C 1.38589 * 111.00031 * 189.99752 * 5 4 3
8 8 N 1.31214 * 126.47321 * 0.02562 * 7 5 4
9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 5
10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7
11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8
12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9
13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10
14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11
15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11
16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12
17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12
18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13
19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13
20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13
21 21 N 1.36451 * 126.47197 * 179.71560 * 7 5 4
22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 5
23 23 H 1.09002 * 109.47351 * 300.00167 * 1 2 3
24 24 H 1.09007 * 109.47438 * 59.99487 * 1 2 3
25 25 H 1.08999 * 109.47237 * 179.97438 * 1 2 3
26 26 H 1.08995 * 109.47199 * 60.00695 * 3 2 1
27 27 H 1.08996 * 109.47505 * 299.99752 * 3 2 1
28 28 H 1.08999 * 109.47362 * 304.99900 * 4 3 2
29 29 H 1.09008 * 109.47006 * 185.00192 * 4 3 2
30 30 H 1.08991 * 109.47322 * 183.95666 * 6 5 4
31 31 H 1.08997 * 109.46717 * 303.95743 * 6 5 4
32 32 H 1.09004 * 109.47145 * 63.95312 * 6 5 4
33 33 H 1.08998 * 109.47064 * 209.98253 * 11 10 9
34 34 H 1.09000 * 109.46741 * 329.97784 * 11 10 9
35 35 H 1.08998 * 109.47563 * 300.00039 * 12 11 10
36 36 H 1.09000 * 109.47543 * 60.00368 * 12 11 10
37 37 H 0.97003 * 119.99853 * 180.02562 * 16 15 13
38 38 H 1.08990 * 109.47162 * 90.00308 * 22 21 7
39 39 H 1.09007 * 109.46895 * 210.00549 * 22 21 7
40 40 H 1.08998 * 109.46920 * 329.99582 * 22 21 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5354 1.1846 0.0006
5 7 3.9778 0.5623 -1.2543
6 6 3.6968 1.4348 -2.4023
7 6 5.3228 0.2331 -1.1982
8 7 6.1324 0.4299 -0.1845
9 7 7.3081 -0.0007 -0.4748
10 6 7.3182 -0.4942 -1.6805
11 6 8.5035 -1.0981 -2.3887
12 6 8.5594 -2.5995 -2.0999
13 6 9.7451 -3.2033 -2.8076
14 1 10.3936 -2.5787 -3.4039
15 6 10.0014 -4.5533 -2.6944
16 7 9.2114 -5.3140 -1.9685
17 14 11.4706 -5.3019 -3.5721
18 1 12.7178 -4.6580 -3.0869
19 1 11.5250 -6.7591 -3.2917
20 1 11.3375 -5.0834 -5.0348
21 7 6.0539 -0.3623 -2.1845
22 6 5.5820 -0.7756 -3.5085
23 1 -0.3634 0.5139 0.8900
24 1 -0.3634 0.5139 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 1.6886 1.8464 0.8900
27 1 1.6885 1.8464 -0.8899
28 1 3.8507 0.5685 0.8427
29 1 3.9784 2.1766 0.0903
30 1 3.9696 0.9214 -3.3242
31 1 2.6345 1.6778 -2.4225
32 1 4.2778 2.3527 -2.3119
33 1 8.4056 -0.9380 -3.4624
34 1 9.4189 -0.6252 -2.0329
35 1 8.6574 -2.7596 -1.0262
36 1 7.6441 -3.0723 -2.4557
37 1 9.3920 -6.2637 -1.8886
38 1 5.7105 0.0461 -4.2128
39 1 6.1575 -1.6374 -3.8466
40 1 4.5270 -1.0433 -3.4508
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001339187752.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:36:39
Heat of formation + Delta-G solvation = 40.715722 kcal
Electronic energy + Delta-G solvation = -20600.446192 eV
Core-core repulsion = 17452.374918 eV
Total energy + Delta-G solvation = -3148.071273 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.54228 -38.65134 -36.97520 -34.82974 -33.78944 -31.76560 -30.14058 -28.86402
-27.51892 -26.64184 -25.91375 -24.89761 -22.63402 -21.70349 -20.45790 -19.81757
-17.23575 -16.82488 -16.51642 -16.26980 -16.00580 -15.37873 -15.18895 -14.60118
-14.44384 -14.35954 -13.44150 -13.22265 -13.06299 -12.84493 -12.75290 -12.28729
-12.27561 -11.90997 -11.72486 -11.29075 -11.18874 -11.01324 -10.95162 -10.71590
-10.33627 -10.01755 -9.87017 -9.82684 -9.68300 -9.33270 -9.20246 -8.38301
-7.84438 -6.02353 -4.06954 2.19399 2.54370 3.32003 3.32498 3.37647
3.39746 3.57656 3.74632 4.43283 4.67489 4.75045 4.84793 4.95223
5.02388 5.10158 5.13147 5.14999 5.16287 5.21500 5.32830 5.33206
5.45102 5.46059 5.53302 5.64727 5.67284 5.86203 6.22566 6.37102
6.50003 6.66335 6.72309 6.95653 7.01795 7.46462 7.59131 7.73007
7.95133 8.32265 8.99158 9.26257 9.57458 11.08607
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.031276 B = 0.003651 C = 0.003534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.047221 B = 7667.492669 C = 7921.627032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.374 6.374
3 C 0.064 3.936
4 C 0.072 3.928
5 N -0.442 5.442
6 C 0.015 3.985
7 C 0.337 3.663
8 N -0.327 5.327
9 N -0.295 5.295
10 C 0.211 3.789
11 C -0.030 4.030
12 C 0.031 3.969
13 C -0.526 4.526
14 H 0.058 0.942
15 C 0.059 3.941
16 N -0.891 5.891
17 Si 0.895 3.105
18 H -0.275 1.275
19 H -0.287 1.287
20 H -0.277 1.277
21 N -0.482 5.482
22 C 0.075 3.925
23 H 0.038 0.962
24 H 0.038 0.962
25 H 0.085 0.915
26 H 0.060 0.940
27 H 0.051 0.949
28 H 0.102 0.898
29 H 0.067 0.933
30 H 0.076 0.924
31 H 0.084 0.916
32 H 0.038 0.962
33 H 0.068 0.932
34 H 0.088 0.912
35 H 0.026 0.974
36 H 0.014 0.986
37 H 0.262 0.738
38 H 0.073 0.927
39 H 0.100 0.900
40 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.983 14.346 -2.362 22.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.293 6.293
3 C -0.013 4.013
4 C -0.055 4.055
5 N -0.166 5.166
6 C -0.132 4.132
7 C -0.020 4.020
8 N -0.172 5.172
9 N -0.133 5.133
10 C -0.057 4.057
11 C -0.070 4.070
12 C -0.007 4.007
13 C -0.564 4.564
14 H 0.076 0.924
15 C -0.143 4.143
16 N -0.530 5.530
17 Si 0.723 3.277
18 H -0.201 1.201
19 H -0.213 1.213
20 H -0.202 1.202
21 N -0.178 5.178
22 C -0.068 4.068
23 H 0.057 0.943
24 H 0.056 0.944
25 H 0.104 0.896
26 H 0.078 0.922
27 H 0.069 0.931
28 H 0.120 0.880
29 H 0.085 0.915
30 H 0.095 0.905
31 H 0.103 0.897
32 H 0.057 0.943
33 H 0.087 0.913
34 H 0.107 0.893
35 H 0.044 0.956
36 H 0.033 0.967
37 H 0.072 0.928
38 H 0.091 0.909
39 H 0.119 0.881
40 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -16.715 14.002 -1.007 21.828
hybrid contribution 0.275 -0.131 -1.688 1.715
sum -16.440 13.870 -2.695 21.678
Atomic orbital electron populations
1.22736 0.81567 1.02794 0.99528 1.88061 1.19003 1.26959 1.95230
1.22651 0.92914 0.85497 1.00286 1.22102 0.92913 0.99426 0.91054
1.58545 1.08695 1.43446 1.05900 1.22689 1.02485 0.95066 0.92989
1.22448 0.90250 1.01221 0.88084 1.74474 0.97185 1.22985 1.22522
1.73964 1.12826 1.15380 1.11120 1.25541 0.86467 1.01022 0.92666
1.20420 0.89804 0.99570 0.97169 1.19072 0.97262 0.86193 0.98164
1.21106 1.11263 0.93348 1.30662 0.92360 1.25017 0.96592 0.97306
0.95343 1.69969 1.37788 1.05816 1.39414 0.86616 0.83099 0.78077
0.79957 1.20096 1.21286 1.20237 1.46028 1.09835 1.47236 1.14668
1.22107 1.02087 1.01995 0.80610 0.94332 0.94366 0.89641 0.92225
0.93123 0.87974 0.91506 0.90548 0.89729 0.94327 0.91302 0.89338
0.95586 0.96737 0.92798 0.90861 0.88115 0.89225
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 101.05 1.11 1.35 16
2 O -0.37 -4.38 10.65 -35.23 -0.38 -4.75 16
3 C 0.06 0.59 6.00 37.16 0.22 0.81 16
4 C 0.07 0.87 4.82 -3.82 -0.02 0.85 16
5 N -0.44 -6.09 4.75 -182.37 -0.87 -6.95 16
6 C 0.02 0.15 9.17 60.07 0.55 0.70 16
7 C 0.34 5.92 7.20 -318.87 -2.30 3.63 16
8 N -0.33 -6.74 11.16 30.32 0.34 -6.40 16
9 N -0.29 -6.63 12.18 32.99 0.40 -6.23 16
10 C 0.21 4.33 7.32 -154.02 -1.13 3.21 16
11 C -0.03 -0.62 5.36 -27.88 -0.15 -0.77 16
12 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16
13 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16
14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16
15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
16 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16
17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16
18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
21 N -0.48 -8.42 3.21 -121.46 -0.39 -8.81 16
22 C 0.08 0.96 9.21 59.85 0.55 1.52 16
23 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
24 H 0.04 0.25 8.14 -51.92 -0.42 -0.18 16
25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.05 0.38 6.26 -51.93 -0.33 0.05 16
28 H 0.10 1.47 7.75 -51.93 -0.40 1.07 16
29 H 0.07 0.74 8.12 -51.92 -0.42 0.31 16
30 H 0.08 0.70 5.42 -51.93 -0.28 0.42 16
31 H 0.08 0.64 6.21 -51.93 -0.32 0.32 16
32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16
33 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16
34 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16
35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16
37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
38 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16
39 H 0.10 1.38 7.88 -51.92 -0.41 0.97 16
40 H 0.09 1.02 7.57 -51.93 -0.39 0.63 16
LS Contribution 331.89 15.07 5.00 5.00
Total: -1.00 -34.79 331.89 -8.18 -42.97
By element:
Atomic # 1 Polarization: 2.50 SS G_CDS: -6.30 Total: -3.80 kcal
Atomic # 6 Polarization: 0.44 SS G_CDS: -1.70 Total: -1.26 kcal
Atomic # 7 Polarization: -54.70 SS G_CDS: 0.22 Total: -54.48 kcal
Atomic # 8 Polarization: -4.38 SS G_CDS: -0.38 Total: -4.75 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -34.79 -8.18 -42.97 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339187752.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.685 kcal
(2) G-P(sol) polarization free energy of solvation -34.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.716 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds