Wall clock time and date at job start Mon Mar 30 2020 00:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99609 * 2 1 4 4 C 1.53004 * 109.46441 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47206 * 65.00448 * 4 3 2 6 6 C 1.46905 * 111.00279 * 66.04296 * 5 4 3 7 7 C 1.38589 * 111.00031 * 189.99752 * 5 4 3 8 8 N 1.31214 * 126.47321 * 0.02562 * 7 5 4 9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 5 10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9 13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13 19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13 21 21 N 1.36451 * 126.47197 * 179.71560 * 7 5 4 22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 5 23 23 H 1.09002 * 109.47351 * 300.00167 * 1 2 3 24 24 H 1.09007 * 109.47438 * 59.99487 * 1 2 3 25 25 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47199 * 60.00695 * 3 2 1 27 27 H 1.08996 * 109.47505 * 299.99752 * 3 2 1 28 28 H 1.08999 * 109.47362 * 304.99900 * 4 3 2 29 29 H 1.09008 * 109.47006 * 185.00192 * 4 3 2 30 30 H 1.08991 * 109.47322 * 183.95666 * 6 5 4 31 31 H 1.08997 * 109.46717 * 303.95743 * 6 5 4 32 32 H 1.09004 * 109.47145 * 63.95312 * 6 5 4 33 33 H 1.08998 * 109.47064 * 209.98253 * 11 10 9 34 34 H 1.09000 * 109.46741 * 329.97784 * 11 10 9 35 35 H 1.08998 * 109.47563 * 300.00039 * 12 11 10 36 36 H 1.09000 * 109.47543 * 60.00368 * 12 11 10 37 37 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 38 38 H 1.08990 * 109.47162 * 90.00308 * 22 21 7 39 39 H 1.09007 * 109.46895 * 210.00549 * 22 21 7 40 40 H 1.08998 * 109.46920 * 329.99582 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 3.6968 1.4348 -2.4023 7 6 5.3228 0.2331 -1.1982 8 7 6.1324 0.4299 -0.1845 9 7 7.3081 -0.0007 -0.4748 10 6 7.3182 -0.4942 -1.6805 11 6 8.5035 -1.0981 -2.3887 12 6 8.5594 -2.5995 -2.0999 13 6 9.7451 -3.2033 -2.8076 14 1 10.3936 -2.5787 -3.4039 15 6 10.0014 -4.5533 -2.6944 16 7 9.2114 -5.3140 -1.9685 17 14 11.4706 -5.3019 -3.5721 18 1 12.7178 -4.6580 -3.0869 19 1 11.5250 -6.7591 -3.2917 20 1 11.3375 -5.0834 -5.0348 21 7 6.0539 -0.3623 -2.1845 22 6 5.5820 -0.7756 -3.5085 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8507 0.5685 0.8427 29 1 3.9784 2.1766 0.0903 30 1 3.9696 0.9214 -3.3242 31 1 2.6345 1.6778 -2.4225 32 1 4.2778 2.3527 -2.3119 33 1 8.4056 -0.9380 -3.4624 34 1 9.4189 -0.6252 -2.0329 35 1 8.6574 -2.7596 -1.0262 36 1 7.6441 -3.0723 -2.4557 37 1 9.3920 -6.2637 -1.8886 38 1 5.7105 0.0461 -4.2128 39 1 6.1575 -1.6374 -3.8466 40 1 4.5270 -1.0433 -3.4508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339187752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:39 Heat of formation + Delta-G solvation = 40.715722 kcal Electronic energy + Delta-G solvation = -20600.446192 eV Core-core repulsion = 17452.374918 eV Total energy + Delta-G solvation = -3148.071273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.54228 -38.65134 -36.97520 -34.82974 -33.78944 -31.76560 -30.14058 -28.86402 -27.51892 -26.64184 -25.91375 -24.89761 -22.63402 -21.70349 -20.45790 -19.81757 -17.23575 -16.82488 -16.51642 -16.26980 -16.00580 -15.37873 -15.18895 -14.60118 -14.44384 -14.35954 -13.44150 -13.22265 -13.06299 -12.84493 -12.75290 -12.28729 -12.27561 -11.90997 -11.72486 -11.29075 -11.18874 -11.01324 -10.95162 -10.71590 -10.33627 -10.01755 -9.87017 -9.82684 -9.68300 -9.33270 -9.20246 -8.38301 -7.84438 -6.02353 -4.06954 2.19399 2.54370 3.32003 3.32498 3.37647 3.39746 3.57656 3.74632 4.43283 4.67489 4.75045 4.84793 4.95223 5.02388 5.10158 5.13147 5.14999 5.16287 5.21500 5.32830 5.33206 5.45102 5.46059 5.53302 5.64727 5.67284 5.86203 6.22566 6.37102 6.50003 6.66335 6.72309 6.95653 7.01795 7.46462 7.59131 7.73007 7.95133 8.32265 8.99158 9.26257 9.57458 11.08607 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.003651 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.047221 B = 7667.492669 C = 7921.627032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.064 3.936 4 C 0.072 3.928 5 N -0.442 5.442 6 C 0.015 3.985 7 C 0.337 3.663 8 N -0.327 5.327 9 N -0.295 5.295 10 C 0.211 3.789 11 C -0.030 4.030 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.482 5.482 22 C 0.075 3.925 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.026 0.974 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 14.346 -2.362 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.013 4.013 4 C -0.055 4.055 5 N -0.166 5.166 6 C -0.132 4.132 7 C -0.020 4.020 8 N -0.172 5.172 9 N -0.133 5.133 10 C -0.057 4.057 11 C -0.070 4.070 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.178 5.178 22 C -0.068 4.068 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.715 14.002 -1.007 21.828 hybrid contribution 0.275 -0.131 -1.688 1.715 sum -16.440 13.870 -2.695 21.678 Atomic orbital electron populations 1.22736 0.81567 1.02794 0.99528 1.88061 1.19003 1.26959 1.95230 1.22651 0.92914 0.85497 1.00286 1.22102 0.92913 0.99426 0.91054 1.58545 1.08695 1.43446 1.05900 1.22689 1.02485 0.95066 0.92989 1.22448 0.90250 1.01221 0.88084 1.74474 0.97185 1.22985 1.22522 1.73964 1.12826 1.15380 1.11120 1.25541 0.86467 1.01022 0.92666 1.20420 0.89804 0.99570 0.97169 1.19072 0.97262 0.86193 0.98164 1.21106 1.11263 0.93348 1.30662 0.92360 1.25017 0.96592 0.97306 0.95343 1.69969 1.37788 1.05816 1.39414 0.86616 0.83099 0.78077 0.79957 1.20096 1.21286 1.20237 1.46028 1.09835 1.47236 1.14668 1.22107 1.02087 1.01995 0.80610 0.94332 0.94366 0.89641 0.92225 0.93123 0.87974 0.91506 0.90548 0.89729 0.94327 0.91302 0.89338 0.95586 0.96737 0.92798 0.90861 0.88115 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.38 10.65 -35.23 -0.38 -4.75 16 3 C 0.06 0.59 6.00 37.16 0.22 0.81 16 4 C 0.07 0.87 4.82 -3.82 -0.02 0.85 16 5 N -0.44 -6.09 4.75 -182.37 -0.87 -6.95 16 6 C 0.02 0.15 9.17 60.07 0.55 0.70 16 7 C 0.34 5.92 7.20 -318.87 -2.30 3.63 16 8 N -0.33 -6.74 11.16 30.32 0.34 -6.40 16 9 N -0.29 -6.63 12.18 32.99 0.40 -6.23 16 10 C 0.21 4.33 7.32 -154.02 -1.13 3.21 16 11 C -0.03 -0.62 5.36 -27.88 -0.15 -0.77 16 12 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 13 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 N -0.48 -8.42 3.21 -121.46 -0.39 -8.81 16 22 C 0.08 0.96 9.21 59.85 0.55 1.52 16 23 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.25 8.14 -51.92 -0.42 -0.18 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 6.26 -51.93 -0.33 0.05 16 28 H 0.10 1.47 7.75 -51.93 -0.40 1.07 16 29 H 0.07 0.74 8.12 -51.92 -0.42 0.31 16 30 H 0.08 0.70 5.42 -51.93 -0.28 0.42 16 31 H 0.08 0.64 6.21 -51.93 -0.32 0.32 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 34 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 39 H 0.10 1.38 7.88 -51.92 -0.41 0.97 16 40 H 0.09 1.02 7.57 -51.93 -0.39 0.63 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -34.79 331.89 -8.18 -42.97 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.30 Total: -3.80 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.70 Total: -1.26 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.22 Total: -54.48 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.38 Total: -4.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.79 -8.18 -42.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339187752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.685 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds