Wall clock time and date at job start Mon Mar 30 2020 00:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99609 * 2 1 4 4 C 1.53004 * 109.46441 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47206 * 65.00448 * 4 3 2 6 6 C 1.46905 * 111.00279 * 66.04296 * 5 4 3 7 7 C 1.38589 * 111.00031 * 189.99752 * 5 4 3 8 8 N 1.31214 * 126.47321 * 0.02562 * 7 5 4 9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 5 10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9 13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13 19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13 21 21 N 1.36451 * 126.47197 * 179.71560 * 7 5 4 22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 5 23 23 H 1.09002 * 109.47351 * 300.00167 * 1 2 3 24 24 H 1.09007 * 109.47438 * 59.99487 * 1 2 3 25 25 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47199 * 60.00695 * 3 2 1 27 27 H 1.08996 * 109.47505 * 299.99752 * 3 2 1 28 28 H 1.08999 * 109.47362 * 304.99900 * 4 3 2 29 29 H 1.09008 * 109.47006 * 185.00192 * 4 3 2 30 30 H 1.08991 * 109.47322 * 183.95666 * 6 5 4 31 31 H 1.08997 * 109.46717 * 303.95743 * 6 5 4 32 32 H 1.09004 * 109.47145 * 63.95312 * 6 5 4 33 33 H 1.08998 * 109.47064 * 209.98253 * 11 10 9 34 34 H 1.09000 * 109.46741 * 329.97784 * 11 10 9 35 35 H 1.08998 * 109.47563 * 300.00039 * 12 11 10 36 36 H 1.09000 * 109.47543 * 60.00368 * 12 11 10 37 37 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 38 38 H 1.08990 * 109.47162 * 90.00308 * 22 21 7 39 39 H 1.09007 * 109.46895 * 210.00549 * 22 21 7 40 40 H 1.08998 * 109.46920 * 329.99582 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 3.6968 1.4348 -2.4023 7 6 5.3228 0.2331 -1.1982 8 7 6.1324 0.4299 -0.1845 9 7 7.3081 -0.0007 -0.4748 10 6 7.3182 -0.4942 -1.6805 11 6 8.5035 -1.0981 -2.3887 12 6 8.5594 -2.5995 -2.0999 13 6 9.7451 -3.2033 -2.8076 14 1 10.3936 -2.5787 -3.4039 15 6 10.0014 -4.5533 -2.6944 16 7 9.2114 -5.3140 -1.9685 17 14 11.4706 -5.3019 -3.5721 18 1 12.7178 -4.6580 -3.0869 19 1 11.5250 -6.7591 -3.2917 20 1 11.3375 -5.0834 -5.0348 21 7 6.0539 -0.3623 -2.1845 22 6 5.5820 -0.7756 -3.5085 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8507 0.5685 0.8427 29 1 3.9784 2.1766 0.0903 30 1 3.9696 0.9214 -3.3242 31 1 2.6345 1.6778 -2.4225 32 1 4.2778 2.3527 -2.3119 33 1 8.4056 -0.9380 -3.4624 34 1 9.4189 -0.6252 -2.0329 35 1 8.6574 -2.7596 -1.0262 36 1 7.6441 -3.0723 -2.4557 37 1 9.3920 -6.2637 -1.8886 38 1 5.7105 0.0461 -4.2128 39 1 6.1575 -1.6374 -3.8466 40 1 4.5270 -1.0433 -3.4508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339187752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:38 Heat of formation + Delta-G solvation = 18.037032 kcal Electronic energy + Delta-G solvation = -20601.429613 eV Core-core repulsion = 17452.374918 eV Total energy + Delta-G solvation = -3149.054695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.98108 -39.55189 -37.90870 -36.38960 -35.55787 -33.63322 -31.17776 -30.24160 -28.78741 -27.58463 -27.08355 -26.34872 -23.88880 -23.39007 -21.70416 -21.30500 -18.65181 -18.25621 -17.69526 -17.40571 -17.29316 -16.49096 -16.40226 -16.04198 -15.51565 -15.36123 -14.93291 -14.80869 -14.37449 -14.14444 -13.87291 -13.62247 -13.25891 -13.02006 -12.82298 -12.68167 -12.65413 -12.54171 -12.44388 -12.06196 -11.91790 -11.82872 -11.45368 -11.29651 -11.14142 -10.73280 -10.55828 -10.52265 -9.21525 -8.19065 -6.32226 0.80124 1.27273 1.43925 1.47615 1.55202 1.81507 2.43010 2.61464 2.89655 3.14845 3.50108 3.74537 3.88033 3.94013 4.09382 4.15163 4.28887 4.34019 4.40700 4.49595 4.55617 4.56291 4.60836 4.63287 4.66853 4.69133 4.82111 4.88634 4.91678 4.94159 5.09109 5.44817 5.50116 5.59234 5.66930 5.79307 6.14851 6.19760 6.33655 6.84029 7.38016 7.76774 8.92869 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.003651 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.047221 B = 7667.492669 C = 7921.627032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.069 3.931 4 C 0.070 3.930 5 N -0.447 5.447 6 C 0.013 3.987 7 C 0.352 3.648 8 N -0.365 5.365 9 N -0.333 5.333 10 C 0.193 3.807 11 C -0.012 4.012 12 C 0.042 3.958 13 C -0.540 4.540 14 H 0.074 0.926 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.259 1.259 21 N -0.481 5.481 22 C 0.068 3.932 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.088 0.912 35 H -0.020 1.020 36 H -0.007 1.007 37 H 0.263 0.737 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.018 15.701 -4.622 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.007 4.007 4 C -0.057 4.057 5 N -0.171 5.171 6 C -0.133 4.133 7 C -0.005 4.005 8 N -0.209 5.209 9 N -0.171 5.171 10 C -0.076 4.076 11 C -0.052 4.052 12 C 0.004 3.996 13 C -0.578 4.578 14 H 0.093 0.907 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.184 1.184 21 N -0.176 5.176 22 C -0.073 4.073 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.106 0.894 35 H -0.002 1.002 36 H 0.012 0.988 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.776 15.386 -3.294 23.740 hybrid contribution 0.427 -0.530 -0.953 1.171 sum -17.349 14.856 -4.247 23.232 Atomic orbital electron populations 1.22884 0.79737 1.03333 1.01002 1.88004 1.21132 1.28427 1.95577 1.22693 0.90417 0.85110 1.02513 1.22176 0.95259 0.98930 0.89336 1.58757 1.05599 1.44859 1.07893 1.22870 1.04467 0.94487 0.91524 1.22918 0.91291 0.99304 0.87018 1.74367 0.97236 1.25032 1.24301 1.73843 1.14392 1.16519 1.12340 1.25314 0.87684 1.01966 0.92643 1.20116 0.90346 0.95746 0.98982 1.18840 0.96038 0.89824 0.94918 1.21579 1.11747 0.93915 1.30561 0.90748 1.26036 0.99766 0.97988 0.96072 1.70133 1.40065 1.06139 1.41235 0.85423 0.79015 0.76782 0.79359 1.19231 1.21370 1.18383 1.46191 1.08757 1.46682 1.15998 1.22452 1.02672 1.03086 0.79109 0.93018 0.92646 0.89721 0.90192 0.90522 0.91308 0.90514 0.89536 0.86764 0.93926 0.88306 0.89360 1.00203 0.98844 0.92812 0.87097 0.89215 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.97 10.65 -148.98 -1.59 -10.56 16 3 C 0.07 1.12 6.00 71.98 0.43 1.55 16 4 C 0.07 1.62 4.82 86.31 0.42 2.04 16 5 N -0.45 -11.62 4.75 -730.91 -3.48 -15.10 16 6 C 0.01 0.21 9.17 127.69 1.17 1.38 16 7 C 0.35 12.31 7.20 260.11 1.87 14.18 16 8 N -0.36 -15.47 11.16 -58.00 -0.65 -16.12 16 9 N -0.33 -15.52 12.18 -49.54 -0.60 -16.12 16 10 C 0.19 8.09 7.32 137.64 1.01 9.10 16 11 C -0.01 -0.51 5.36 29.85 0.16 -0.35 16 12 C 0.04 2.26 4.95 29.85 0.15 2.41 16 13 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 14 H 0.07 3.81 7.74 -2.92 -0.02 3.78 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 17 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 N -0.48 -16.53 3.21 -538.17 -1.73 -18.26 16 22 C 0.07 1.61 9.21 127.77 1.18 2.78 16 23 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 0.84 6.26 -2.39 -0.01 0.82 16 28 H 0.07 2.05 7.75 -2.39 -0.02 2.04 16 29 H 0.08 1.61 8.12 -2.38 -0.02 1.59 16 30 H 0.09 1.26 5.42 -2.39 -0.01 1.24 16 31 H 0.11 1.22 6.21 -2.39 -0.01 1.20 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 3.49 7.92 -2.39 -0.02 3.47 16 34 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 35 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 36 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.11 1.80 7.86 -2.39 -0.02 1.78 16 39 H 0.09 2.36 7.88 -2.38 -0.02 2.34 16 40 H 0.11 2.15 7.57 -2.39 -0.02 2.14 16 Total: -1.00 -78.81 331.89 3.62 -75.19 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.02 Total: 7.46 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 8.33 Total: 5.34 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.17 Total: -123.08 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.59 Total: -10.56 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -78.81 3.62 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339187752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.230 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds