Wall clock time and date at job start Mon Mar 30 2020 00:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00334 * 2 1 4 4 C 1.52991 * 109.47398 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47126 * 179.97438 * 4 3 2 6 6 N 1.30298 * 126.34909 * 270.03775 * 5 4 3 7 7 N 1.28523 * 110.05519 * 179.69086 * 6 5 4 8 8 C 1.31222 * 109.86299 * 0.45843 * 7 6 5 9 9 N 1.38568 * 126.47527 * 179.81665 * 8 7 6 10 10 C 1.46899 * 110.99983 * 123.64561 * 9 8 7 11 11 C 1.46898 * 111.00271 * 359.69198 * 9 8 7 12 12 H 1.09001 * 109.47338 * 59.99661 * 11 9 8 13 13 C 1.53000 * 109.46903 * 299.99603 * 11 9 8 14 14 C 1.50701 * 109.47379 * 180.02562 * 11 9 8 15 15 H 1.07996 * 119.99914 * 35.02904 * 14 11 9 16 16 C 1.37872 * 119.99817 * 215.03687 * 14 11 9 17 17 N 1.31516 * 119.99973 * 184.82587 * 16 14 11 18 18 Si 1.86801 * 120.00419 * 4.82268 * 16 14 11 19 19 H 1.48499 * 109.46815 * 84.66238 * 18 16 14 20 20 H 1.48497 * 109.47235 * 204.66506 * 18 16 14 21 21 H 1.48497 * 109.46849 * 324.66971 * 18 16 14 22 22 N 1.36457 * 107.04792 * 359.55948 * 8 7 6 23 23 C 1.46498 * 127.13549 * 180.28535 * 22 8 7 24 24 H 1.09003 * 109.46720 * 300.00263 * 1 2 3 25 25 H 1.09001 * 109.46777 * 59.99792 * 1 2 3 26 26 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47032 * 59.99463 * 3 2 1 28 28 H 1.08998 * 109.46760 * 300.00181 * 3 2 1 29 29 H 1.09004 * 109.47086 * 60.00283 * 4 3 2 30 30 H 1.08997 * 109.47122 * 300.00361 * 4 3 2 31 31 H 1.09000 * 109.47127 * 59.99946 * 10 9 8 32 32 H 1.08998 * 109.47623 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46925 * 300.00087 * 10 9 8 34 34 H 1.09008 * 109.47122 * 55.63175 * 13 11 9 35 35 H 1.09003 * 109.46877 * 175.62243 * 13 11 9 36 36 H 1.08999 * 109.47616 * 295.63036 * 13 11 9 37 37 H 0.97008 * 120.00454 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47280 * 89.99441 * 23 22 8 39 39 H 1.08996 * 109.46922 * 210.00009 * 23 22 8 40 40 H 1.09008 * 109.47059 * 329.99657 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0000 6 7 4.4623 3.2664 -1.0498 7 7 4.9582 4.3961 -0.6897 8 6 4.9966 4.4691 0.6199 9 7 5.4693 5.5325 1.3722 10 6 4.4404 6.0187 2.3011 11 6 5.9516 6.6167 0.5063 12 1 5.1348 6.9697 -0.1231 13 6 7.0880 6.0970 -0.3766 14 6 6.4573 7.7526 1.3579 15 1 6.9531 7.5458 2.2948 16 6 6.2867 9.0556 0.9410 17 7 6.8104 10.0421 1.6355 18 14 5.3119 9.4201 -0.6102 19 1 3.8645 9.4778 -0.2831 20 1 5.7450 10.7247 -1.1719 21 1 5.5512 8.3472 -1.6086 22 7 4.4778 3.3023 1.1010 23 6 4.3081 2.9226 2.5057 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8575 0.6436 -0.8892 30 1 3.8567 0.6438 0.8908 31 1 4.1513 5.2138 2.9768 32 1 4.8378 6.8528 2.8793 33 1 3.5688 6.3500 1.7366 34 1 6.7447 5.2263 -0.9355 35 1 7.3935 6.8782 -1.0727 36 1 7.9351 5.8162 0.2492 37 1 6.6908 10.9589 1.3420 38 1 3.3270 3.2459 2.8535 39 1 4.3891 1.8399 2.6017 40 1 5.0821 3.3996 3.1071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339202425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:36 Heat of formation + Delta-G solvation = 52.367560 kcal Electronic energy + Delta-G solvation = -21189.615706 eV Core-core repulsion = 18042.049695 eV Total energy + Delta-G solvation = -3147.566012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64307 -38.22251 -37.33340 -34.91313 -33.17504 -32.34268 -30.08676 -28.85240 -27.60142 -26.64634 -25.37069 -24.46470 -23.50037 -21.81855 -20.41977 -19.40950 -17.34181 -16.92344 -16.50587 -16.20205 -16.03517 -15.34855 -15.12624 -14.68047 -14.15382 -13.93652 -13.59419 -13.36302 -13.13523 -12.73946 -12.51237 -12.41687 -12.12848 -11.71595 -11.58345 -11.49699 -11.13173 -10.93245 -10.72193 -10.57120 -10.43767 -10.10233 -9.96686 -9.90593 -9.69087 -9.49594 -8.85159 -8.65860 -7.51981 -6.20300 -4.21616 2.05877 2.54325 3.14910 3.24816 3.34028 3.43392 3.53236 4.34044 4.34802 4.57020 4.68156 4.72148 4.83384 5.03630 5.04721 5.13189 5.14631 5.16616 5.31955 5.36015 5.38217 5.51754 5.67408 5.79439 5.92038 6.08263 6.22212 6.47585 6.50292 6.74096 6.80282 6.81510 6.98557 7.03964 7.31426 7.47633 7.63993 7.91402 8.47198 8.85667 9.20436 9.41970 10.91269 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.004579 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.646210 B = 6113.360977 C = 6236.173044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.068 3.932 4 C -0.018 4.018 5 C 0.145 3.855 6 N -0.278 5.278 7 N -0.325 5.325 8 C 0.386 3.614 9 N -0.448 5.448 10 C 0.034 3.966 11 C 0.196 3.804 12 H 0.023 0.977 13 C -0.144 4.144 14 C -0.512 4.512 15 H 0.083 0.917 16 C 0.080 3.920 17 N -0.890 5.890 18 Si 0.866 3.134 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.257 1.257 22 N -0.490 5.490 23 C 0.078 3.922 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 -17.241 1.823 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.010 4.010 4 C -0.058 4.058 5 C -0.122 4.122 6 N -0.118 5.118 7 N -0.170 5.170 8 C 0.031 3.969 9 N -0.172 5.172 10 C -0.113 4.113 11 C 0.092 3.908 12 H 0.041 0.959 13 C -0.202 4.202 14 C -0.551 4.551 15 H 0.101 0.899 16 C -0.124 4.124 17 N -0.527 5.527 18 Si 0.692 3.308 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.181 1.181 22 N -0.187 5.187 23 C -0.066 4.066 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.324 -16.912 0.701 19.827 hybrid contribution -1.354 0.554 0.352 1.505 sum -11.678 -16.358 1.052 20.126 Atomic orbital electron populations 1.22744 0.80705 1.02757 1.00177 1.87822 1.19946 1.27762 1.95514 1.22454 0.92932 0.84618 1.01015 1.19606 0.92630 0.88280 1.05280 1.24067 1.07327 0.97873 0.82961 1.73926 1.13176 1.00420 1.24229 1.74761 1.22363 1.12868 1.07052 1.23368 0.95185 0.88442 0.89935 1.59149 1.31473 1.07939 1.18654 1.22413 0.92216 1.01259 0.95445 1.19813 0.93822 0.86745 0.90418 0.95950 1.22092 0.98685 1.00561 0.98884 1.20819 1.38125 0.88234 1.07905 0.89884 1.24923 0.94977 0.96015 0.96468 1.69875 1.43877 0.99627 1.39294 0.87005 0.80703 0.78286 0.84779 1.20198 1.21096 1.18123 1.46059 1.50066 1.14395 1.08216 1.22063 1.03583 1.02221 0.78712 0.94079 0.93886 0.89500 0.93403 0.92260 0.87742 0.89590 0.92932 0.87440 0.95479 0.92358 0.93257 0.93674 0.92307 0.90732 0.89592 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.01 10.70 -35.23 -0.38 -4.39 16 3 C 0.07 0.70 5.92 37.15 0.22 0.92 16 4 C -0.02 -0.20 5.96 -27.89 -0.17 -0.37 16 5 C 0.15 2.25 7.32 -154.01 -1.13 1.13 16 6 N -0.28 -5.45 12.18 32.99 0.40 -5.05 16 7 N -0.33 -7.15 9.03 30.31 0.27 -6.88 16 8 C 0.39 7.71 6.73 -318.88 -2.14 5.57 16 9 N -0.45 -9.43 4.69 -176.09 -0.83 -10.26 16 10 C 0.03 0.61 9.10 60.06 0.55 1.16 16 11 C 0.20 4.77 1.39 -68.87 -0.10 4.67 16 12 H 0.02 0.58 5.27 -51.93 -0.27 0.31 16 13 C -0.14 -3.41 9.03 37.16 0.34 -3.07 16 14 C -0.51 -13.81 7.39 -34.44 -0.25 -14.07 16 15 H 0.08 2.41 8.05 -52.49 -0.42 1.99 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 18 Si 0.87 21.44 26.98 -169.99 -4.59 16.85 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.39 6.83 56.52 0.39 -6.00 16 22 N -0.49 -7.63 3.21 -121.46 -0.39 -8.02 16 23 C 0.08 0.81 9.33 59.85 0.56 1.37 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 0.77 7.27 -51.93 -0.38 0.40 16 31 H 0.05 0.74 5.40 -51.93 -0.28 0.46 16 32 H 0.11 2.13 6.82 -51.93 -0.35 1.77 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 1.36 5.35 -51.92 -0.28 1.09 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 39 H 0.09 0.66 7.25 -51.93 -0.38 0.28 16 40 H 0.10 1.04 7.57 -51.92 -0.39 0.64 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -32.76 322.85 -7.10 -39.86 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.12 Total: -2.45 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.11 Total: 0.79 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.23 Total: -55.52 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.38 Total: -4.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.76 -7.10 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339202425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.226 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds