Wall clock time and date at job start Mon Mar 30 2020 00:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 114.00334 * 2 1 4 4 C 1.52991 * 109.47398 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47126 * 179.97438 * 4 3 2 6 6 N 1.30298 * 126.34909 * 270.03775 * 5 4 3 7 7 N 1.28523 * 110.05519 * 179.69086 * 6 5 4 8 8 C 1.31222 * 109.86299 * 0.45843 * 7 6 5 9 9 N 1.38568 * 126.47527 * 179.81665 * 8 7 6 10 10 C 1.46899 * 110.99983 * 123.64561 * 9 8 7 11 11 C 1.46898 * 111.00271 * 359.69198 * 9 8 7 12 12 H 1.09001 * 109.47338 * 59.99661 * 11 9 8 13 13 C 1.53000 * 109.46903 * 299.99603 * 11 9 8 14 14 C 1.50701 * 109.47379 * 180.02562 * 11 9 8 15 15 H 1.07996 * 119.99914 * 35.02904 * 14 11 9 16 16 C 1.37872 * 119.99817 * 215.03687 * 14 11 9 17 17 N 1.31516 * 119.99973 * 184.82587 * 16 14 11 18 18 Si 1.86801 * 120.00419 * 4.82268 * 16 14 11 19 19 H 1.48499 * 109.46815 * 84.66238 * 18 16 14 20 20 H 1.48497 * 109.47235 * 204.66506 * 18 16 14 21 21 H 1.48497 * 109.46849 * 324.66971 * 18 16 14 22 22 N 1.36457 * 107.04792 * 359.55948 * 8 7 6 23 23 C 1.46498 * 127.13549 * 180.28535 * 22 8 7 24 24 H 1.09003 * 109.46720 * 300.00263 * 1 2 3 25 25 H 1.09001 * 109.46777 * 59.99792 * 1 2 3 26 26 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47032 * 59.99463 * 3 2 1 28 28 H 1.08998 * 109.46760 * 300.00181 * 3 2 1 29 29 H 1.09004 * 109.47086 * 60.00283 * 4 3 2 30 30 H 1.08997 * 109.47122 * 300.00361 * 4 3 2 31 31 H 1.09000 * 109.47127 * 59.99946 * 10 9 8 32 32 H 1.08998 * 109.47623 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46925 * 300.00087 * 10 9 8 34 34 H 1.09008 * 109.47122 * 55.63175 * 13 11 9 35 35 H 1.09003 * 109.46877 * 175.62243 * 13 11 9 36 36 H 1.08999 * 109.47616 * 295.63036 * 13 11 9 37 37 H 0.97008 * 120.00454 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47280 * 89.99441 * 23 22 8 39 39 H 1.08996 * 109.46922 * 210.00009 * 23 22 8 40 40 H 1.09008 * 109.47059 * 329.99657 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0000 6 7 4.4623 3.2664 -1.0498 7 7 4.9582 4.3961 -0.6897 8 6 4.9966 4.4691 0.6199 9 7 5.4693 5.5325 1.3722 10 6 4.4404 6.0187 2.3011 11 6 5.9516 6.6167 0.5063 12 1 5.1348 6.9697 -0.1231 13 6 7.0880 6.0970 -0.3766 14 6 6.4573 7.7526 1.3579 15 1 6.9531 7.5458 2.2948 16 6 6.2867 9.0556 0.9410 17 7 6.8104 10.0421 1.6355 18 14 5.3119 9.4201 -0.6102 19 1 3.8645 9.4778 -0.2831 20 1 5.7450 10.7247 -1.1719 21 1 5.5512 8.3472 -1.6086 22 7 4.4778 3.3023 1.1010 23 6 4.3081 2.9226 2.5057 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8575 0.6436 -0.8892 30 1 3.8567 0.6438 0.8908 31 1 4.1513 5.2138 2.9768 32 1 4.8378 6.8528 2.8793 33 1 3.5688 6.3500 1.7366 34 1 6.7447 5.2263 -0.9355 35 1 7.3935 6.8782 -1.0727 36 1 7.9351 5.8162 0.2492 37 1 6.6908 10.9589 1.3420 38 1 3.3270 3.2459 2.8535 39 1 4.3891 1.8399 2.6017 40 1 5.0821 3.3996 3.1071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339202425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:35 Heat of formation + Delta-G solvation = 30.899952 kcal Electronic energy + Delta-G solvation = -21190.546612 eV Core-core repulsion = 18042.049695 eV Total energy + Delta-G solvation = -3148.496917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.01036 -39.15399 -38.80685 -36.15184 -34.88202 -33.73517 -31.91616 -30.15078 -28.62110 -27.57252 -27.02477 -26.05778 -24.47204 -23.44380 -21.62964 -21.07060 -19.27555 -17.99725 -17.68172 -17.17709 -17.17212 -16.81039 -16.41261 -15.98059 -15.63076 -15.30903 -14.69689 -14.53185 -14.45424 -14.32020 -13.98445 -13.74619 -13.21743 -13.03396 -12.99228 -12.73018 -12.49531 -12.45243 -12.25553 -12.20467 -12.14905 -11.89428 -11.62215 -11.18664 -11.00696 -10.82427 -10.67017 -10.57253 -9.08806 -8.36580 -6.40530 0.76758 1.25127 1.31705 1.33457 1.44434 1.78060 2.27425 2.66521 2.86017 3.06082 3.56193 3.77232 3.85361 4.03642 4.08833 4.23852 4.29459 4.37152 4.38616 4.50257 4.54164 4.55472 4.56512 4.69320 4.70241 4.85420 4.87414 4.88664 5.04552 5.05530 5.07777 5.13286 5.40845 5.51613 5.72752 5.81826 6.12970 6.18017 6.51059 6.66566 7.25269 7.80734 8.78551 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.004579 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.646210 B = 6113.360977 C = 6236.173044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.074 3.926 4 C -0.015 4.015 5 C 0.175 3.825 6 N -0.322 5.322 7 N -0.366 5.366 8 C 0.366 3.634 9 N -0.453 5.453 10 C 0.036 3.964 11 C 0.205 3.795 12 H 0.008 0.992 13 C -0.136 4.136 14 C -0.504 4.504 15 H 0.053 0.947 16 C 0.036 3.964 17 N -0.930 5.930 18 Si 0.919 3.081 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.261 1.261 22 N -0.480 5.480 23 C 0.063 3.937 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.270 0.730 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 -19.700 2.411 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.004 4.004 4 C -0.055 4.055 5 C -0.094 4.094 6 N -0.161 5.161 7 N -0.211 5.211 8 C 0.009 3.991 9 N -0.177 5.177 10 C -0.110 4.110 11 C 0.099 3.901 12 H 0.025 0.975 13 C -0.195 4.195 14 C -0.543 4.543 15 H 0.072 0.928 16 C -0.164 4.164 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.185 1.185 22 N -0.176 5.176 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.109 -19.404 1.310 22.910 hybrid contribution -0.870 1.115 0.242 1.435 sum -12.980 -18.289 1.552 22.480 Atomic orbital electron populations 1.22951 0.79219 1.04115 1.00757 1.87792 1.21546 1.27356 1.95601 1.22296 0.92264 0.84919 1.00919 1.19797 0.93045 0.85622 1.06990 1.24847 1.04223 0.98328 0.82000 1.73848 1.15482 1.00646 1.26124 1.74602 1.23501 1.14479 1.08525 1.23111 0.96844 0.89386 0.89759 1.58948 1.32986 1.07411 1.18351 1.22460 0.91109 1.02212 0.95255 1.19503 0.93391 0.87063 0.90114 0.97456 1.21997 0.98413 1.00427 0.98637 1.20861 1.37260 0.89301 1.06883 0.92848 1.25524 0.95912 0.95964 0.98998 1.69972 1.45660 1.00125 1.41137 0.86159 0.79862 0.78043 0.81567 1.19303 1.20372 1.18535 1.46267 1.48478 1.12699 1.10200 1.22539 1.04894 1.04721 0.75624 0.93018 0.93804 0.87847 0.92281 0.93709 0.87460 0.86474 0.88465 0.89583 0.96145 0.91918 0.94026 0.93922 0.92055 0.88266 0.85955 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.97 10.70 -148.98 -1.59 -8.57 16 3 C 0.07 1.30 5.92 71.98 0.43 1.73 16 4 C -0.02 -0.28 5.96 29.84 0.18 -0.10 16 5 C 0.18 5.00 7.32 137.64 1.01 6.01 16 6 N -0.32 -12.37 12.18 -49.54 -0.60 -12.97 16 7 N -0.37 -16.01 9.03 -58.01 -0.52 -16.53 16 8 C 0.37 14.24 6.73 260.11 1.75 15.99 16 9 N -0.45 -18.89 4.69 -711.01 -3.33 -22.23 16 10 C 0.04 1.29 9.10 127.69 1.16 2.45 16 11 C 0.21 10.07 1.39 44.17 0.06 10.14 16 12 H 0.01 0.40 5.27 -2.39 -0.01 0.39 16 13 C -0.14 -6.55 9.03 71.98 0.65 -5.90 16 14 C -0.50 -27.84 7.39 25.60 0.19 -27.65 16 15 H 0.05 3.22 8.05 -2.91 -0.02 3.19 16 16 C 0.04 2.05 5.47 84.65 0.46 2.51 16 17 N -0.93 -55.64 13.96 21.45 0.30 -55.35 16 18 Si 0.92 44.76 26.98 68.60 1.85 46.61 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.26 -12.80 6.83 99.48 0.68 -12.12 16 22 N -0.48 -13.63 3.21 -538.19 -1.73 -15.36 16 23 C 0.06 1.04 9.33 127.77 1.19 2.23 16 24 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.12 1.50 7.27 -2.39 -0.02 1.48 16 31 H 0.10 2.51 5.40 -2.39 -0.01 2.49 16 32 H 0.09 3.43 6.82 -2.39 -0.02 3.41 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 2.97 5.35 -2.38 -0.01 2.96 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 38 H 0.10 1.22 7.85 -2.39 -0.02 1.20 16 39 H 0.12 1.18 7.25 -2.39 -0.02 1.16 16 40 H 0.09 1.68 7.57 -2.38 -0.02 1.66 16 Total: -1.00 -72.95 322.85 3.70 -69.25 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.00 Total: 6.18 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 8.33 Total: 8.96 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.89 Total: -122.44 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -1.59 Total: -8.57 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.85 Total: 46.61 kcal Total: -72.95 3.70 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339202425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.153 kcal (2) G-P(sol) polarization free energy of solvation -72.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds