Wall clock time and date at job start Mon Mar 30 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30299 * 126.34746 * 269.69358 * 5 4 3 7 7 N 1.28529 * 110.05433 * 179.81930 * 6 5 4 8 8 C 1.31215 * 109.86043 * 0.45014 * 7 6 5 9 9 N 1.38579 * 126.47161 * 179.73674 * 8 7 6 10 10 C 1.46902 * 110.99323 * 236.03937 * 9 8 7 11 11 C 1.46894 * 110.99930 * 359.97438 * 9 8 7 12 12 H 1.08999 * 109.47493 * 300.00027 * 11 9 8 13 13 C 1.52997 * 109.47417 * 60.00429 * 11 9 8 14 14 C 1.50709 * 109.46877 * 180.02562 * 11 9 8 15 15 H 1.07994 * 120.00042 * 359.97438 * 14 11 9 16 16 C 1.37880 * 120.00012 * 180.02562 * 14 11 9 17 17 N 1.31519 * 119.99835 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 119.99850 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47515 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.46912 * 120.00162 * 18 16 14 21 21 H 1.48506 * 109.47043 * 239.99391 * 18 16 14 22 22 N 1.36459 * 107.05431 * 359.72600 * 8 7 6 23 23 C 1.46502 * 127.13619 * 180.02562 * 22 8 7 24 24 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 25 25 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 28 28 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99892 * 4 3 2 30 30 H 1.08992 * 109.47303 * 59.99596 * 4 3 2 31 31 H 1.09000 * 109.47557 * 60.00452 * 10 9 8 32 32 H 1.09006 * 109.46839 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47483 * 299.99789 * 10 9 8 34 34 H 1.08997 * 109.47055 * 300.00294 * 13 11 9 35 35 H 1.09000 * 109.46596 * 59.99926 * 13 11 9 36 36 H 1.08995 * 109.47213 * 179.97438 * 13 11 9 37 37 H 0.96994 * 119.99894 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.46922 * 269.97956 * 23 22 8 39 39 H 1.08998 * 109.46933 * 29.98115 * 23 22 8 40 40 H 1.09000 * 109.46641 * 149.97675 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 7 4.4682 3.2648 -1.0479 7 7 4.9646 4.3941 -0.6868 8 6 4.9972 4.4683 0.6229 9 7 5.4700 5.5311 1.3761 10 6 6.5194 5.0917 2.3056 11 6 5.9535 6.6155 0.5112 12 1 6.7633 6.2452 -0.1175 13 6 4.8078 7.1122 -0.3728 14 6 6.4592 7.7506 1.3639 15 1 6.4244 7.6742 2.4406 16 6 6.9653 8.8870 0.7694 17 7 7.0072 8.9802 -0.5418 18 14 7.5913 10.2942 1.8263 19 1 7.4342 9.9439 3.2608 20 1 9.0262 10.5359 1.5295 21 1 6.8108 11.5221 1.5287 22 7 4.4775 3.3015 1.1030 23 6 4.3071 2.9209 2.5074 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 3.8567 0.6439 0.8909 30 1 3.8575 0.6436 -0.8890 31 1 7.3496 4.6665 1.7417 32 1 6.8730 5.9453 2.8840 33 1 6.1145 4.3377 2.9806 34 1 4.4424 6.2910 -0.9894 35 1 3.9982 7.4825 0.2560 36 1 5.1665 7.9171 -1.0142 37 1 7.3629 9.7799 -0.9601 38 1 5.2035 2.4083 2.8562 39 1 4.1425 3.8150 3.1087 40 1 3.4483 2.2563 2.6020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339202426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:37 Heat of formation + Delta-G solvation = 33.236024 kcal Electronic energy + Delta-G solvation = -21086.280501 eV Core-core repulsion = 17937.884884 eV Total energy + Delta-G solvation = -3148.395617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.97042 -39.08919 -38.76231 -36.13430 -34.96671 -33.65650 -31.19451 -30.11905 -28.60760 -27.54620 -27.02824 -25.96890 -24.45411 -23.58867 -21.60016 -21.21704 -18.55490 -17.93517 -17.54176 -17.39534 -17.09011 -16.81028 -16.31197 -15.96608 -15.62803 -15.27720 -14.69340 -14.51752 -14.29684 -14.19686 -13.84997 -13.52749 -13.04713 -12.96792 -12.82899 -12.71139 -12.48725 -12.26487 -12.23772 -12.14317 -12.07244 -12.00501 -11.47516 -11.06453 -10.98807 -10.66802 -10.57255 -10.47800 -9.04798 -8.13300 -6.29419 0.80092 1.32996 1.44808 1.46154 1.58124 1.84284 2.41151 2.68076 3.01615 3.18186 3.57442 3.75608 3.88521 4.06000 4.12901 4.26632 4.34584 4.38005 4.46988 4.51444 4.55711 4.57130 4.69489 4.80457 4.82811 4.86147 4.88804 4.97115 5.05504 5.15977 5.31183 5.40775 5.55992 5.65183 5.94048 6.00597 6.12876 6.16169 6.56988 6.80882 7.39697 7.86193 8.93670 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040079 B = 0.004100 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.444140 B = 6827.599277 C = 7096.167278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.074 3.926 4 C -0.014 4.014 5 C 0.172 3.828 6 N -0.327 5.327 7 N -0.366 5.366 8 C 0.368 3.632 9 N -0.455 5.455 10 C 0.033 3.967 11 C 0.242 3.758 12 H -0.026 1.026 13 C -0.128 4.128 14 C -0.529 4.529 15 H 0.076 0.924 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.972 3.028 19 H -0.257 1.257 20 H -0.282 1.282 21 H -0.283 1.283 22 N -0.482 5.482 23 C 0.064 3.936 24 H 0.043 0.957 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 -17.155 9.166 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.004 4.004 4 C -0.053 4.053 5 C -0.097 4.097 6 N -0.165 5.165 7 N -0.211 5.211 8 C 0.011 3.989 9 N -0.179 5.179 10 C -0.113 4.113 11 C 0.137 3.863 12 H -0.008 1.008 13 C -0.187 4.187 14 C -0.567 4.567 15 H 0.094 0.906 16 C -0.189 4.189 17 N -0.558 5.558 18 Si 0.796 3.204 19 H -0.181 1.181 20 H -0.208 1.208 21 H -0.209 1.209 22 N -0.179 5.179 23 C -0.077 4.077 24 H 0.061 0.939 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.034 0.966 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.521 -16.610 7.911 20.715 hybrid contribution 0.640 0.898 0.743 1.330 sum -8.881 -15.711 8.654 20.015 Atomic orbital electron populations 1.22955 0.79198 1.04150 1.00770 1.87789 1.21576 1.27259 1.95601 1.22300 0.92305 0.84923 1.00910 1.19788 0.93000 0.85539 1.07006 1.24886 1.04648 0.98067 0.82068 1.73862 1.16099 1.00189 1.26388 1.74688 1.23681 1.13838 1.08889 1.23172 0.99586 0.86486 0.89699 1.59008 1.36639 1.03664 1.18557 1.22549 0.91271 1.02334 0.95185 1.18953 0.91624 0.86264 0.89477 1.00787 1.21776 0.97163 1.00634 0.99122 1.21421 1.40957 1.00696 0.93604 0.90581 1.25838 0.95802 1.01054 0.96178 1.70102 1.46114 1.29153 1.10426 0.85301 0.77527 0.78301 0.79237 1.18075 1.20772 1.20886 1.46285 1.48189 1.13221 1.10178 1.22528 1.05676 1.03839 0.75626 0.93850 0.87738 0.92996 0.93816 0.92287 0.86341 0.87518 0.96555 0.88849 0.88490 0.93767 0.96048 0.92115 0.92783 0.88071 0.88617 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.48 10.70 -148.98 -1.59 -9.07 16 3 C 0.07 1.43 5.92 71.98 0.43 1.86 16 4 C -0.01 -0.28 5.79 29.85 0.17 -0.11 16 5 C 0.17 5.38 7.32 137.64 1.01 6.38 16 6 N -0.33 -13.75 12.18 -49.54 -0.60 -14.35 16 7 N -0.37 -17.72 9.00 -58.00 -0.52 -18.24 16 8 C 0.37 15.49 6.76 260.11 1.76 17.25 16 9 N -0.45 -19.93 4.69 -710.99 -3.33 -23.27 16 10 C 0.03 1.18 9.08 127.69 1.16 2.33 16 11 C 0.24 13.04 1.73 44.17 0.08 13.12 16 12 H -0.03 -1.58 8.11 -2.39 -0.02 -1.60 16 13 C -0.13 -7.12 8.77 71.98 0.63 -6.49 16 14 C -0.53 -28.67 7.88 25.60 0.20 -28.47 16 15 H 0.08 3.87 6.40 -2.91 -0.02 3.85 16 16 C 0.01 0.59 5.30 84.65 0.45 1.04 16 17 N -0.92 -54.46 11.32 21.45 0.24 -54.22 16 18 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 N -0.48 -14.76 3.21 -538.18 -1.73 -16.48 16 23 C 0.06 1.12 9.20 127.77 1.18 2.30 16 24 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.12 1.68 7.92 -2.39 -0.02 1.67 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 3.40 6.10 -2.38 -0.01 3.38 16 33 H 0.10 2.47 5.41 -2.39 -0.01 2.46 16 34 H 0.04 2.44 5.43 -2.39 -0.01 2.42 16 35 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 3.65 6.07 -2.39 -0.01 3.63 16 37 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.10 1.32 7.85 -2.39 -0.02 1.30 16 39 H 0.10 1.74 7.57 -2.39 -0.02 1.72 16 40 H 0.12 1.29 7.88 -2.39 -0.02 1.28 16 Total: -1.00 -75.01 322.91 3.82 -71.19 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.03 Total: 8.80 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 8.31 Total: 10.79 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -5.94 Total: -126.57 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -1.59 Total: -9.07 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -75.01 3.82 -71.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339202426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.423 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds