Wall clock time and date at job start Mon Mar 30 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47104 * 2 1 4 4 C 1.36449 * 127.13643 * 84.97512 * 3 2 1 5 5 N 1.38580 * 126.47281 * 0.02562 * 4 3 2 6 6 C 1.46902 * 111.00007 * 163.86444 * 5 4 3 7 7 O 1.46294 * 111.00288 * 39.90986 * 5 4 3 8 8 C 1.42905 * 114.00141 * 231.06117 * 7 5 4 9 9 N 1.31223 * 107.05517 * 180.24147 * 4 3 2 10 10 N 1.28528 * 109.85485 * 359.75847 * 9 4 3 11 11 C 1.30287 * 110.05654 * 0.02562 * 10 9 4 12 12 C 1.50701 * 126.34665 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47518 * 234.41449 * 12 11 10 14 14 C 1.53009 * 109.47181 * 114.41632 * 12 11 10 15 15 C 1.50696 * 109.47283 * 354.41964 * 12 11 10 16 16 H 1.08000 * 119.99887 * 359.97438 * 15 12 11 17 17 C 1.37882 * 120.00369 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99813 * 359.71587 * 17 15 12 19 19 Si 1.86800 * 120.00228 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46908 * 59.99451 * 19 17 15 21 21 H 1.48498 * 109.47211 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46886 * 299.99640 * 19 17 15 23 23 H 1.09001 * 109.47204 * 184.61898 * 1 2 3 24 24 H 1.08989 * 109.47490 * 304.62072 * 1 2 3 25 25 H 1.09009 * 109.46969 * 64.62361 * 1 2 3 26 26 H 1.09004 * 109.47212 * 240.00205 * 2 1 3 27 27 H 1.08998 * 109.47197 * 120.00600 * 2 1 3 28 28 H 1.08998 * 109.47427 * 59.99840 * 6 5 4 29 29 H 1.08997 * 109.47310 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47003 * 299.99838 * 6 5 4 31 31 H 1.08999 * 109.46563 * 304.80235 * 8 7 5 32 32 H 1.08994 * 109.46957 * 64.80008 * 8 7 5 33 33 H 1.08994 * 109.47086 * 184.80568 * 8 7 5 34 34 H 1.08996 * 109.47183 * 177.89124 * 13 12 11 35 35 H 1.08997 * 109.46995 * 297.89722 * 13 12 11 36 36 H 1.09005 * 109.46537 * 57.89130 * 13 12 11 37 37 H 1.09003 * 109.46794 * 304.92136 * 14 12 11 38 38 H 1.09003 * 109.46773 * 64.91845 * 14 12 11 39 39 H 1.09003 * 109.46924 * 184.92125 * 14 12 11 40 40 H 0.97002 * 119.99947 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2031 2.1896 1.0836 5 7 1.9634 1.8596 2.4080 6 6 2.6206 2.8103 3.3147 7 8 2.3855 0.4878 2.6912 8 6 1.3857 -0.3076 3.3315 9 7 2.6461 3.3402 0.6343 10 7 2.7523 3.2973 -0.6459 11 6 2.3859 2.1269 -1.0856 12 6 2.3656 1.6797 -2.5246 13 6 0.9705 1.1599 -2.8776 14 6 3.3919 0.5629 -2.7262 15 6 2.7085 2.8442 -3.4175 16 1 2.9197 3.8115 -2.9861 17 6 2.7518 2.6750 -4.7852 18 7 2.4991 1.4959 -5.3102 19 14 3.1762 4.1187 -5.8920 20 1 4.5303 4.6233 -5.5498 21 1 3.1563 3.6780 -7.3099 22 1 2.1800 5.2023 -5.6959 23 1 -0.3634 -1.0243 0.0828 24 1 -0.3634 0.5838 0.8456 25 1 -0.3633 0.4405 -0.9286 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2369 3.8136 3.1296 29 1 2.4167 2.5278 4.3475 30 1 3.6964 2.7948 3.1398 31 1 1.0522 0.1915 4.2414 32 1 0.5390 -0.4385 2.6577 33 1 1.8033 -1.2822 3.5839 34 1 0.9454 0.8714 -3.9284 35 1 0.7376 0.2943 -2.2574 36 1 0.2346 1.9438 -2.6983 37 1 4.3715 0.9052 -2.3923 38 1 3.0957 -0.3116 -2.1469 39 1 3.4396 0.2997 -3.7829 40 1 2.5299 1.3768 -6.2724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339592402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:16 Heat of formation + Delta-G solvation = 95.818786 kcal Electronic energy + Delta-G solvation = -22175.463609 eV Core-core repulsion = 19029.781784 eV Total energy + Delta-G solvation = -3145.681825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28314 -37.65504 -36.14456 -34.68574 -33.89498 -31.22274 -30.24372 -28.27031 -26.86866 -25.91811 -25.48263 -24.76942 -23.58595 -21.74726 -20.41338 -19.17618 -17.60181 -16.42718 -15.95125 -15.69000 -15.45646 -14.97564 -14.92922 -14.57941 -13.56729 -13.41067 -13.20811 -12.84253 -12.75054 -12.61444 -12.09534 -11.92169 -11.88904 -11.43202 -11.30114 -10.98374 -10.78175 -10.61916 -10.54720 -10.24125 -10.22219 -10.11761 -9.95826 -9.86410 -9.58538 -9.38437 -8.74251 -8.36034 -7.73517 -6.01299 -4.07379 1.73921 2.83987 3.09294 3.38557 3.40423 3.47642 3.76511 4.45901 4.58985 4.98717 5.19414 5.21989 5.26296 5.27821 5.31073 5.37851 5.40975 5.47083 5.51904 5.64559 5.78367 5.84694 5.93162 6.07864 6.22847 6.44612 6.60407 6.64749 6.70501 6.77147 6.84516 7.10148 7.16216 7.36980 7.57114 7.78841 7.85773 8.11269 8.32722 8.99235 9.52459 9.62363 11.01868 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.006089 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.862150 B = 4597.513355 C = 5187.214676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 N -0.470 5.470 4 C 0.300 3.700 5 N -0.271 5.271 6 C 0.027 3.973 7 O -0.260 6.260 8 C 0.031 3.969 9 N -0.308 5.308 10 N -0.283 5.283 11 C 0.245 3.755 12 C 0.146 3.854 13 C -0.141 4.141 14 C -0.133 4.133 15 C -0.491 4.491 16 H 0.077 0.923 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.276 1.276 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.021 0.979 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.010 0.990 39 H 0.101 0.899 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 -6.731 13.596 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 N -0.166 5.166 4 C -0.056 4.056 5 N -0.040 5.040 6 C -0.121 4.121 7 O -0.258 6.258 8 C -0.066 4.066 9 N -0.157 5.157 10 N -0.121 5.121 11 C -0.022 4.022 12 C 0.143 3.857 13 C -0.199 4.199 14 C -0.192 4.192 15 C -0.530 4.530 16 H 0.095 0.905 17 C -0.138 4.138 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.202 1.202 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.120 0.880 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.707 -5.546 13.556 15.109 hybrid contribution 0.275 -0.679 -0.414 0.841 sum -3.433 -6.225 13.142 14.942 Atomic orbital electron populations 1.22332 0.94470 1.02576 1.03895 1.22075 0.95546 0.79790 1.05052 1.46319 1.50764 1.13491 1.05980 1.22645 1.05833 0.90842 0.86305 1.64517 1.48856 0.92103 0.98529 1.22673 0.99025 0.95254 0.95177 1.90836 1.37065 1.16508 1.81397 1.22790 0.93086 0.93831 0.96920 1.74559 1.18164 1.17549 1.05439 1.74090 1.20028 1.17565 1.00464 1.26221 0.95966 0.87416 0.92567 1.16933 0.93901 0.95510 0.79345 1.22118 0.96076 0.97232 1.04458 1.21949 0.97504 0.95231 1.04475 1.21047 1.46155 0.95597 0.90175 0.90529 1.24871 0.95037 0.96052 0.97855 1.69757 1.50043 1.21876 1.11789 0.86485 0.79262 0.82483 0.78826 1.20153 1.21472 1.20191 0.90995 0.92144 0.90460 0.87960 0.88849 0.87847 0.90131 0.92977 0.93116 0.93162 0.88832 0.88337 0.96073 0.95112 0.95126 0.97073 0.88041 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.25 37.16 0.34 -2.01 16 2 C 0.10 1.54 5.64 -4.04 -0.02 1.51 16 3 N -0.47 -9.32 2.81 -114.09 -0.32 -9.64 16 4 C 0.30 5.95 7.76 -318.87 -2.47 3.47 16 5 N -0.27 -4.27 5.13 -68.05 -0.35 -4.62 16 6 C 0.03 0.35 9.61 60.07 0.58 0.92 16 7 O -0.26 -3.68 8.83 -13.92 -0.12 -3.81 16 8 C 0.03 0.30 10.71 101.05 1.08 1.38 16 9 N -0.31 -6.99 11.33 30.31 0.34 -6.65 16 10 N -0.28 -7.16 11.00 32.99 0.36 -6.80 16 11 C 0.25 5.76 6.34 -154.02 -0.98 4.79 16 12 C 0.15 3.53 0.47 -156.81 -0.07 3.46 16 13 C -0.14 -3.15 7.37 37.16 0.27 -2.88 16 14 C -0.13 -3.07 8.19 37.16 0.30 -2.77 16 15 C -0.49 -13.36 7.91 -34.44 -0.27 -13.63 16 16 H 0.08 2.21 6.95 -52.49 -0.36 1.84 16 17 C 0.06 1.65 5.13 -17.82 -0.09 1.55 16 18 N -0.90 -23.58 9.31 55.43 0.52 -23.06 16 19 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.82 7.76 -51.94 -0.40 0.42 16 25 H 0.08 1.18 5.80 -51.92 -0.30 0.88 16 26 H 0.10 1.64 4.55 -51.93 -0.24 1.41 16 27 H 0.09 1.31 5.04 -51.93 -0.26 1.05 16 28 H 0.10 1.36 7.95 -51.93 -0.41 0.95 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.48 6.87 -51.93 -0.36 0.12 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 2.40 6.03 -51.93 -0.31 2.08 16 35 H 0.02 0.40 3.91 -51.93 -0.20 0.19 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.01 0.21 5.82 -51.93 -0.30 -0.09 16 39 H 0.10 2.51 5.94 -51.93 -0.31 2.20 16 40 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 309.58 15.07 4.67 4.67 Total: -1.00 -30.48 309.58 -6.81 -37.30 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.56 Total: 0.49 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.33 Total: -4.20 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.55 Total: -50.77 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.12 Total: -3.81 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.48 -6.81 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339592402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.114 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds