Wall clock time and date at job start Mon Mar 30 2020 00:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47104 * 2 1 4 4 C 1.36449 * 127.13643 * 84.97512 * 3 2 1 5 5 N 1.38580 * 126.47281 * 0.02562 * 4 3 2 6 6 C 1.46902 * 111.00007 * 163.86444 * 5 4 3 7 7 O 1.46294 * 111.00288 * 39.90986 * 5 4 3 8 8 C 1.42905 * 114.00141 * 231.06117 * 7 5 4 9 9 N 1.31223 * 107.05517 * 180.24147 * 4 3 2 10 10 N 1.28528 * 109.85485 * 359.75847 * 9 4 3 11 11 C 1.30287 * 110.05654 * 0.02562 * 10 9 4 12 12 C 1.50701 * 126.34665 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47518 * 234.41449 * 12 11 10 14 14 C 1.53009 * 109.47181 * 114.41632 * 12 11 10 15 15 C 1.50696 * 109.47283 * 354.41964 * 12 11 10 16 16 H 1.08000 * 119.99887 * 359.97438 * 15 12 11 17 17 C 1.37882 * 120.00369 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99813 * 359.71587 * 17 15 12 19 19 Si 1.86800 * 120.00228 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46908 * 59.99451 * 19 17 15 21 21 H 1.48498 * 109.47211 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46886 * 299.99640 * 19 17 15 23 23 H 1.09001 * 109.47204 * 184.61898 * 1 2 3 24 24 H 1.08989 * 109.47490 * 304.62072 * 1 2 3 25 25 H 1.09009 * 109.46969 * 64.62361 * 1 2 3 26 26 H 1.09004 * 109.47212 * 240.00205 * 2 1 3 27 27 H 1.08998 * 109.47197 * 120.00600 * 2 1 3 28 28 H 1.08998 * 109.47427 * 59.99840 * 6 5 4 29 29 H 1.08997 * 109.47310 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47003 * 299.99838 * 6 5 4 31 31 H 1.08999 * 109.46563 * 304.80235 * 8 7 5 32 32 H 1.08994 * 109.46957 * 64.80008 * 8 7 5 33 33 H 1.08994 * 109.47086 * 184.80568 * 8 7 5 34 34 H 1.08996 * 109.47183 * 177.89124 * 13 12 11 35 35 H 1.08997 * 109.46995 * 297.89722 * 13 12 11 36 36 H 1.09005 * 109.46537 * 57.89130 * 13 12 11 37 37 H 1.09003 * 109.46794 * 304.92136 * 14 12 11 38 38 H 1.09003 * 109.46773 * 64.91845 * 14 12 11 39 39 H 1.09003 * 109.46924 * 184.92125 * 14 12 11 40 40 H 0.97002 * 119.99947 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2031 2.1896 1.0836 5 7 1.9634 1.8596 2.4080 6 6 2.6206 2.8103 3.3147 7 8 2.3855 0.4878 2.6912 8 6 1.3857 -0.3076 3.3315 9 7 2.6461 3.3402 0.6343 10 7 2.7523 3.2973 -0.6459 11 6 2.3859 2.1269 -1.0856 12 6 2.3656 1.6797 -2.5246 13 6 0.9705 1.1599 -2.8776 14 6 3.3919 0.5629 -2.7262 15 6 2.7085 2.8442 -3.4175 16 1 2.9197 3.8115 -2.9861 17 6 2.7518 2.6750 -4.7852 18 7 2.4991 1.4959 -5.3102 19 14 3.1762 4.1187 -5.8920 20 1 4.5303 4.6233 -5.5498 21 1 3.1563 3.6780 -7.3099 22 1 2.1800 5.2023 -5.6959 23 1 -0.3634 -1.0243 0.0828 24 1 -0.3634 0.5838 0.8456 25 1 -0.3633 0.4405 -0.9286 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2369 3.8136 3.1296 29 1 2.4167 2.5278 4.3475 30 1 3.6964 2.7948 3.1398 31 1 1.0522 0.1915 4.2414 32 1 0.5390 -0.4385 2.6577 33 1 1.8033 -1.2822 3.5839 34 1 0.9454 0.8714 -3.9284 35 1 0.7376 0.2943 -2.2574 36 1 0.2346 1.9438 -2.6983 37 1 4.3715 0.9052 -2.3923 38 1 3.0957 -0.3116 -2.1469 39 1 3.4396 0.2997 -3.7829 40 1 2.5299 1.3768 -6.2724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339592402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:15 Heat of formation + Delta-G solvation = 79.057315 kcal Electronic energy + Delta-G solvation = -22176.190441 eV Core-core repulsion = 19029.781784 eV Total energy + Delta-G solvation = -3146.408657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.89623 -38.82190 -37.85378 -36.23837 -35.10322 -33.15340 -31.58483 -29.85564 -27.81731 -27.71915 -27.25270 -26.17083 -24.89706 -23.40915 -21.87247 -20.89292 -18.89687 -18.06019 -17.45301 -17.17893 -16.90219 -16.63180 -16.19666 -15.87166 -15.19114 -14.71286 -14.52991 -14.29893 -14.16313 -13.61772 -13.55635 -13.27838 -13.23994 -13.05570 -12.81965 -12.68122 -12.57655 -12.26740 -12.11804 -12.02494 -11.90088 -11.77922 -11.53173 -11.26730 -11.20839 -10.87684 -10.61842 -10.37073 -9.30844 -8.03667 -6.15066 0.43147 1.34486 1.46441 1.47143 1.55677 1.65205 2.15482 2.49523 3.21699 3.40119 3.71606 3.75585 4.05261 4.16226 4.23551 4.39956 4.43206 4.53953 4.54643 4.60774 4.64474 4.68892 4.78077 4.81076 4.86137 4.88756 4.89409 4.96475 5.18335 5.22648 5.28614 5.48540 5.49895 5.70149 5.73384 5.98863 6.05569 6.24216 6.40316 6.87814 7.50373 7.91352 8.97016 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.006089 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.862150 B = 4597.513355 C = 5187.214676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.467 5.467 4 C 0.318 3.682 5 N -0.272 5.272 6 C 0.027 3.973 7 O -0.266 6.266 8 C 0.019 3.981 9 N -0.343 5.343 10 N -0.328 5.328 11 C 0.227 3.773 12 C 0.142 3.858 13 C -0.126 4.126 14 C -0.122 4.122 15 C -0.516 4.516 16 H 0.050 0.950 17 C 0.031 3.969 18 N -0.900 5.900 19 Si 0.948 3.052 20 H -0.281 1.281 21 H -0.276 1.276 22 H -0.280 1.280 23 H 0.112 0.888 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 -8.777 15.320 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.162 5.162 4 C -0.039 4.039 5 N -0.040 5.040 6 C -0.120 4.120 7 O -0.265 6.265 8 C -0.077 4.077 9 N -0.191 5.191 10 N -0.166 5.166 11 C -0.042 4.042 12 C 0.139 3.861 13 C -0.184 4.184 14 C -0.180 4.180 15 C -0.554 4.554 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.539 5.539 19 Si 0.774 3.226 20 H -0.207 1.207 21 H -0.201 1.201 22 H -0.206 1.206 23 H 0.130 0.870 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.060 0.940 39 H 0.102 0.898 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.605 -7.600 15.284 17.679 hybrid contribution 0.496 -0.153 -0.755 0.916 sum -4.108 -7.753 14.529 16.973 Atomic orbital electron populations 1.22298 0.92563 1.04926 1.02725 1.22434 0.97082 0.77686 1.05929 1.46460 1.50258 1.14602 1.04889 1.23076 1.02928 0.89949 0.87949 1.64449 1.49127 0.94004 0.96446 1.22785 0.97998 0.94700 0.96515 1.90852 1.38550 1.15149 1.81978 1.23179 0.92771 0.94436 0.97307 1.74425 1.20608 1.19513 1.04564 1.73970 1.21471 1.19175 1.01954 1.25900 0.97376 0.87848 0.93051 1.16859 0.94780 0.94784 0.79659 1.21935 0.94774 0.97914 1.03778 1.21780 0.96507 0.96036 1.03684 1.21147 1.47227 0.95780 0.91282 0.93217 1.25357 0.94993 0.97950 0.98531 1.69825 1.49701 1.22406 1.12010 0.85777 0.78438 0.80277 0.78059 1.20725 1.20102 1.20597 0.86979 0.92208 0.92512 0.88283 0.86662 0.88396 0.86222 0.94223 0.91619 0.92719 0.85774 0.90215 0.92696 0.96563 0.96752 0.94022 0.89761 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 9.25 71.98 0.67 -3.31 16 2 C 0.09 2.56 5.64 86.38 0.49 3.05 16 3 N -0.47 -18.09 2.81 -514.86 -1.45 -19.54 16 4 C 0.32 12.40 7.76 260.11 2.02 14.41 16 5 N -0.27 -7.97 5.13 -369.22 -1.89 -9.86 16 6 C 0.03 0.66 9.61 127.69 1.23 1.88 16 7 O -0.27 -6.59 8.83 -50.14 -0.44 -7.03 16 8 C 0.02 0.28 10.71 113.37 1.21 1.50 16 9 N -0.34 -15.87 11.33 -58.00 -0.66 -16.53 16 10 N -0.33 -17.16 11.00 -49.54 -0.54 -17.70 16 11 C 0.23 10.84 6.34 137.64 0.87 11.71 16 12 C 0.14 6.97 0.47 -53.67 -0.03 6.95 16 13 C -0.13 -5.64 7.37 71.98 0.53 -5.11 16 14 C -0.12 -5.62 8.19 71.99 0.59 -5.03 16 15 C -0.52 -28.95 7.91 25.60 0.20 -28.75 16 16 H 0.05 3.01 6.95 -2.91 -0.02 2.99 16 17 C 0.03 1.68 5.13 84.66 0.43 2.11 16 18 N -0.90 -47.64 9.31 21.45 0.20 -47.44 16 19 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.44 7.76 -2.39 -0.02 1.42 16 25 H 0.06 1.60 5.80 -2.38 -0.01 1.59 16 26 H 0.10 2.90 4.55 -2.39 -0.01 2.89 16 27 H 0.12 2.79 5.04 -2.39 -0.01 2.78 16 28 H 0.10 2.49 7.95 -2.39 -0.02 2.47 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.78 6.87 -2.39 -0.02 0.77 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 3.88 6.03 -2.39 -0.01 3.86 16 35 H 0.05 2.02 3.91 -2.39 -0.01 2.01 16 36 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.04 1.61 5.82 -2.39 -0.01 1.60 16 39 H 0.08 4.19 5.94 -2.39 -0.01 4.17 16 40 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -68.36 309.58 6.51 -61.85 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.05 Total: 10.39 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 8.22 Total: -0.59 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -4.34 Total: -111.08 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.44 Total: -7.03 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.36 6.51 -61.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339592402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.907 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds