Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47471 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99598 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00024 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46826 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.00827 * 294.99914 * 16 15 14 18 18 C 1.54442 * 109.01717 * 176.09501 * 16 15 14 19 19 C 1.50807 * 109.00228 * 161.95429 * 18 16 15 20 20 C 1.54169 * 112.54814 * 93.10250 * 19 18 16 21 21 C 1.53813 * 111.97048 * 318.47811 * 20 19 18 22 22 C 1.50813 * 111.62432 * 319.04723 * 21 20 19 23 23 N 1.39778 * 109.02394 * 53.91712 * 16 15 14 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 28 28 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 29 29 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 30 30 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 31 31 H 0.97003 * 119.99676 * 0.02562 * 14 12 11 32 32 H 1.08997 * 109.47471 * 300.00459 * 15 14 12 33 33 H 1.09002 * 109.46764 * 59.99958 * 15 14 12 34 34 H 1.09001 * 109.54142 * 281.88095 * 18 16 15 35 35 H 1.08992 * 109.54666 * 42.15423 * 18 16 15 36 36 H 1.09003 * 108.89402 * 332.30843 * 19 18 16 37 37 H 1.08999 * 108.80341 * 213.83377 * 19 18 16 38 38 H 1.09004 * 108.98091 * 197.84120 * 20 19 18 39 39 H 1.09001 * 108.98012 * 79.12536 * 20 19 18 40 40 H 1.09001 * 109.05001 * 198.49252 * 21 20 19 41 41 H 1.09004 * 109.04944 * 79.59741 * 21 20 19 42 42 H 1.09001 * 109.74270 * 335.42240 * 22 21 20 43 43 H 1.08998 * 109.79073 * 214.72421 * 22 21 20 44 44 H 1.00902 * 110.99599 * 309.71631 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 6 6.0538 -4.0575 -0.0022 13 8 5.2657 -4.9792 -0.0022 14 7 7.3789 -4.3038 -0.0029 15 6 7.8672 -5.6850 -0.0030 16 6 9.3972 -5.6849 -0.0045 17 1 9.7513 -5.2496 -0.9389 18 6 9.9006 -7.1416 0.0948 19 6 11.3420 -7.1942 -0.3458 20 6 12.3258 -7.0552 0.8330 21 6 11.8712 -5.9840 1.8388 22 6 11.3212 -4.7649 1.1418 23 7 9.8539 -4.9064 1.0628 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 3.6579 -3.1514 0.8880 28 1 3.6585 -3.1495 -0.8920 29 1 5.9148 -2.1220 -0.8910 30 1 5.9149 -2.1236 0.8890 31 1 8.0093 -3.5665 -0.0025 32 1 7.5043 -6.1988 0.8871 33 1 7.5034 -6.1988 -0.8928 34 1 9.8205 -7.4856 1.1260 35 1 9.2990 -7.7802 -0.5519 36 1 11.5243 -6.3859 -1.0540 37 1 11.5223 -8.1463 -0.8447 38 1 13.3076 -6.7833 0.4452 39 1 12.4020 -8.0138 1.3461 40 1 12.7218 -5.6890 2.4533 41 1 11.0984 -6.4050 2.4820 42 1 11.7391 -4.6951 0.1375 43 1 11.5749 -3.8695 1.7092 44 1 9.4026 -4.0040 1.0711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341437642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = -59.543394 kcal Electronic energy + Delta-G solvation = -20313.809522 eV Core-core repulsion = 17264.931031 eV Total energy + Delta-G solvation = -3048.878491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17748 -39.01763 -35.43702 -34.25578 -33.34522 -32.57163 -31.98938 -28.83192 -27.24108 -26.12534 -24.11707 -22.92470 -20.90425 -20.60911 -19.86552 -19.64799 -17.55611 -16.68249 -16.37491 -16.04230 -15.83072 -15.26692 -15.08895 -14.52578 -14.27846 -13.99126 -13.82253 -13.38153 -13.17478 -12.67580 -12.60777 -12.44620 -12.12927 -11.97112 -11.54264 -11.51310 -11.28354 -11.05074 -10.95181 -10.78858 -10.76616 -10.68552 -9.98618 -9.82195 -9.67795 -9.39717 -9.10913 -9.05424 -8.72585 -8.49153 -5.98814 -3.96388 2.89498 3.20595 3.32810 3.39756 3.42679 3.73407 4.31000 4.43760 4.48699 4.50115 4.70279 4.73520 4.81222 5.00599 5.07464 5.16298 5.20997 5.34435 5.39783 5.42198 5.50162 5.56298 5.59150 5.63159 5.69379 5.76464 5.78045 5.82150 5.97938 6.07817 6.13333 6.40852 6.59071 6.71922 6.86950 6.94884 7.09441 7.40065 7.48209 7.51981 7.84848 8.41650 8.61554 9.08229 9.63242 11.14927 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.002786 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.212226 B =10047.237286 C =10507.539603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.289 1.289 7 C -0.518 4.518 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.087 4.087 11 C -0.142 4.142 12 C 0.513 3.487 13 O -0.533 6.533 14 N -0.741 5.741 15 C 0.121 3.879 16 C 0.100 3.900 17 H 0.029 0.971 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.121 4.121 22 C 0.069 3.931 23 N -0.699 5.699 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.393 0.607 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.773 -11.203 0.682 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.301 3.699 13 O -0.408 6.408 14 N -0.395 5.395 15 C -0.004 4.004 16 C -0.012 4.012 17 H 0.047 0.953 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.059 4.059 23 N -0.334 5.334 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.227 0.773 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 28.032 -12.293 1.053 30.627 hybrid contribution 0.870 1.882 -0.702 2.189 sum 28.903 -10.410 0.351 30.722 Atomic orbital electron populations 1.69927 1.06304 1.26764 1.51396 1.25063 0.94751 0.99158 0.94738 0.86752 0.80297 0.83638 0.78398 1.20352 1.19068 1.21477 1.21173 0.89554 0.94543 1.50356 0.90929 1.19608 0.97309 0.92202 0.96060 1.21263 0.89232 0.99501 1.02550 1.21871 1.00750 0.91924 1.03610 1.21145 0.81327 0.92626 0.74813 1.90699 1.55102 1.46788 1.48255 1.46112 1.07601 1.08156 1.77647 1.21523 0.92207 0.83868 1.02761 1.20583 0.93593 0.95102 0.91881 0.95349 1.21492 0.95695 0.94829 1.03079 1.21405 0.94754 1.01731 0.97920 1.21925 0.98283 0.99097 0.96292 1.21447 1.00751 0.95431 0.98255 1.21632 0.86428 0.98325 0.99557 1.57252 1.07609 1.20610 1.47955 0.92813 0.96714 0.97097 0.92067 0.92110 0.89489 0.89358 0.77264 0.90728 0.91288 0.90286 0.91069 0.92473 0.92087 0.92511 0.92198 0.92114 0.90453 0.94123 0.90940 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 8 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 11 C -0.14 -2.19 5.70 -27.89 -0.16 -2.35 16 12 C 0.51 7.96 7.83 -10.99 -0.09 7.87 16 13 O -0.53 -10.64 15.98 5.56 0.09 -10.55 16 14 N -0.74 -8.16 5.18 -60.30 -0.31 -8.47 16 15 C 0.12 1.25 5.25 -4.04 -0.02 1.23 16 16 C 0.10 0.78 2.31 -70.63 -0.16 0.62 16 17 H 0.03 0.23 7.54 -51.93 -0.39 -0.16 16 18 C -0.11 -0.81 5.00 -27.07 -0.14 -0.95 16 19 C -0.12 -0.76 5.32 -27.22 -0.14 -0.90 16 20 C -0.12 -0.70 5.91 -25.70 -0.15 -0.85 16 21 C -0.12 -0.76 5.41 -27.40 -0.15 -0.90 16 22 C 0.07 0.43 6.22 -4.52 -0.03 0.40 16 23 N -0.70 -5.20 5.72 -111.16 -0.64 -5.83 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 27 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 28 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.39 3.17 6.99 -40.82 -0.29 2.88 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.63 7.10 -51.93 -0.37 0.26 16 35 H 0.07 0.49 8.02 -51.93 -0.42 0.08 16 36 H 0.06 0.37 6.58 -51.93 -0.34 0.03 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.59 7.26 -51.93 -0.38 0.21 16 42 H 0.04 0.26 6.66 -51.93 -0.35 -0.09 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.34 2.38 6.68 -39.29 -0.26 2.12 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -33.88 338.99 -9.13 -43.01 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.79 Total: -0.64 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.70 Total: -12.04 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.17 Total: -42.09 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.88 -9.13 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341437642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.535 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds