Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47471 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99598 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00024 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46826 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.00827 * 294.99914 * 16 15 14 18 18 C 1.54442 * 109.01717 * 176.09501 * 16 15 14 19 19 C 1.50807 * 109.00228 * 161.95429 * 18 16 15 20 20 C 1.54169 * 112.54814 * 93.10250 * 19 18 16 21 21 C 1.53813 * 111.97048 * 318.47811 * 20 19 18 22 22 C 1.50813 * 111.62432 * 319.04723 * 21 20 19 23 23 N 1.39778 * 109.02394 * 53.91712 * 16 15 14 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 28 28 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 29 29 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 30 30 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 31 31 H 0.97003 * 119.99676 * 0.02562 * 14 12 11 32 32 H 1.08997 * 109.47471 * 300.00459 * 15 14 12 33 33 H 1.09002 * 109.46764 * 59.99958 * 15 14 12 34 34 H 1.09001 * 109.54142 * 281.88095 * 18 16 15 35 35 H 1.08992 * 109.54666 * 42.15423 * 18 16 15 36 36 H 1.09003 * 108.89402 * 332.30843 * 19 18 16 37 37 H 1.08999 * 108.80341 * 213.83377 * 19 18 16 38 38 H 1.09004 * 108.98091 * 197.84120 * 20 19 18 39 39 H 1.09001 * 108.98012 * 79.12536 * 20 19 18 40 40 H 1.09001 * 109.05001 * 198.49252 * 21 20 19 41 41 H 1.09004 * 109.04944 * 79.59741 * 21 20 19 42 42 H 1.09001 * 109.74270 * 335.42240 * 22 21 20 43 43 H 1.08998 * 109.79073 * 214.72421 * 22 21 20 44 44 H 1.00902 * 110.99599 * 309.71631 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 6 6.0538 -4.0575 -0.0022 13 8 5.2657 -4.9792 -0.0022 14 7 7.3789 -4.3038 -0.0029 15 6 7.8672 -5.6850 -0.0030 16 6 9.3972 -5.6849 -0.0045 17 1 9.7513 -5.2496 -0.9389 18 6 9.9006 -7.1416 0.0948 19 6 11.3420 -7.1942 -0.3458 20 6 12.3258 -7.0552 0.8330 21 6 11.8712 -5.9840 1.8388 22 6 11.3212 -4.7649 1.1418 23 7 9.8539 -4.9064 1.0628 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 3.6579 -3.1514 0.8880 28 1 3.6585 -3.1495 -0.8920 29 1 5.9148 -2.1220 -0.8910 30 1 5.9149 -2.1236 0.8890 31 1 8.0093 -3.5665 -0.0025 32 1 7.5043 -6.1988 0.8871 33 1 7.5034 -6.1988 -0.8928 34 1 9.8205 -7.4856 1.1260 35 1 9.2990 -7.7802 -0.5519 36 1 11.5243 -6.3859 -1.0540 37 1 11.5223 -8.1463 -0.8447 38 1 13.3076 -6.7833 0.4452 39 1 12.4020 -8.0138 1.3461 40 1 12.7218 -5.6890 2.4533 41 1 11.0984 -6.4050 2.4820 42 1 11.7391 -4.6951 0.1375 43 1 11.5749 -3.8695 1.7092 44 1 9.4026 -4.0040 1.0711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341437642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = -83.935523 kcal Electronic energy + Delta-G solvation = -20314.867244 eV Core-core repulsion = 17264.931031 eV Total energy + Delta-G solvation = -3049.936214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08329 -39.95145 -36.40979 -35.98729 -34.16508 -33.97144 -33.19760 -30.41505 -28.25248 -26.70198 -25.55393 -23.93807 -22.12003 -21.58025 -21.26693 -20.19638 -18.99047 -18.27594 -17.35443 -17.03135 -16.80044 -16.33146 -16.20771 -15.60452 -15.17360 -15.09272 -14.93169 -14.70950 -14.28700 -14.02957 -13.81654 -13.53711 -13.16248 -12.98273 -12.77534 -12.69091 -12.46028 -12.09557 -11.84611 -11.77551 -11.71486 -11.56275 -11.48262 -11.32354 -11.31043 -11.18816 -10.76957 -10.74017 -10.11271 -9.28716 -8.26760 -6.32412 1.39319 1.43099 1.55152 1.68030 2.19418 2.40159 3.08290 3.14341 3.68310 3.87646 3.92596 3.97786 4.15300 4.19249 4.21556 4.26490 4.27450 4.44066 4.59381 4.67262 4.74829 4.77973 4.85145 4.92547 4.93921 4.97754 5.00803 5.05490 5.08795 5.21815 5.29428 5.30864 5.42181 5.45499 5.57238 5.58612 5.61802 5.69341 6.31886 6.33072 6.51496 6.54963 6.76469 7.28843 7.32014 8.90986 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.002786 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.212226 B =10047.237286 C =10507.539603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.235 1.235 6 H -0.287 1.287 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.716 5.716 15 C 0.122 3.878 16 C 0.113 3.887 17 H 0.036 0.964 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.120 4.120 22 C 0.070 3.930 23 N -0.708 5.708 24 H 0.266 0.734 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.412 0.588 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.623 -9.252 0.523 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.157 1.157 6 H -0.213 1.213 7 C -0.578 4.578 8 H 0.037 0.963 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.468 6.468 14 N -0.371 5.371 15 C -0.002 4.002 16 C 0.001 3.999 17 H 0.054 0.946 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.058 4.058 23 N -0.344 5.344 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.250 0.750 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 31.955 -10.345 0.896 33.600 hybrid contribution -0.393 1.157 -0.634 1.377 sum 31.562 -9.187 0.262 32.873 Atomic orbital electron populations 1.70115 1.08722 1.28273 1.52737 1.26230 0.95772 1.04210 0.93876 0.85471 0.79666 0.76931 0.79390 1.18890 1.15749 1.21287 1.21575 0.92795 0.92805 1.50663 0.96346 1.19548 0.93397 0.94326 0.97357 1.21047 0.93645 0.97107 1.00201 1.21724 0.96205 0.92500 1.06571 1.21176 0.82293 0.92111 0.74329 1.90692 1.56792 1.48192 1.51153 1.45851 1.06438 1.09296 1.75473 1.21554 0.94097 0.83056 1.01537 1.20451 0.91346 0.95662 0.92417 0.94601 1.21490 0.96564 0.94457 1.02570 1.21379 0.93966 1.02102 0.98119 1.21922 0.98516 0.99018 0.96047 1.21434 1.00594 0.95534 0.98230 1.21679 0.85408 0.98726 0.99972 1.57236 1.08586 1.20777 1.47771 0.92526 0.95066 0.95174 0.94632 0.94634 0.86440 0.86280 0.74999 0.92521 0.92091 0.91248 0.91046 0.92294 0.91584 0.91648 0.92295 0.91199 0.92096 0.93674 0.89796 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16 2 C -0.01 -0.31 5.47 84.66 0.46 0.15 16 3 Si 0.96 43.97 27.47 68.60 1.88 45.86 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.54 -32.73 9.66 25.60 0.25 -32.48 16 8 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.08 -3.43 4.44 30.59 0.14 -3.29 16 11 C -0.13 -3.67 5.70 29.85 0.17 -3.50 16 12 C 0.51 15.27 7.83 87.66 0.69 15.96 16 13 O -0.59 -23.99 15.98 -3.03 -0.05 -24.04 16 14 N -0.72 -14.28 5.18 -463.07 -2.40 -16.68 16 15 C 0.12 2.41 5.25 86.38 0.45 2.87 16 16 C 0.11 1.57 2.31 46.69 0.11 1.67 16 17 H 0.04 0.47 7.54 -2.39 -0.02 0.45 16 18 C -0.11 -1.49 5.00 30.37 0.15 -1.34 16 19 C -0.12 -1.27 5.32 30.28 0.16 -1.10 16 20 C -0.12 -1.15 5.91 31.26 0.18 -0.97 16 21 C -0.12 -1.27 5.41 30.16 0.16 -1.11 16 22 C 0.07 0.69 6.22 85.45 0.53 1.22 16 23 N -0.71 -8.93 5.72 -505.61 -2.89 -11.82 16 24 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 25 H 0.03 1.37 7.20 -2.38 -0.02 1.35 16 26 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 27 H 0.03 1.63 8.10 -2.38 -0.02 1.61 16 28 H 0.03 1.62 8.10 -2.39 -0.02 1.61 16 29 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.41 5.18 6.99 -92.71 -0.65 4.53 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.07 7.10 -2.39 -0.02 1.05 16 35 H 0.07 0.94 8.02 -2.39 -0.02 0.92 16 36 H 0.06 0.62 6.58 -2.39 -0.02 0.61 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.86 7.26 -2.38 -0.02 0.84 16 42 H 0.05 0.43 6.66 -2.39 -0.02 0.41 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.35 3.79 6.68 -89.69 -0.60 3.19 16 Total: -1.00 -77.52 338.99 0.10 -77.42 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -0.33 Total: 13.42 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 3.58 Total: -22.22 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -4.99 Total: -90.44 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -77.52 0.10 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341437642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.511 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds