Wall clock time and date at job start Mon Mar 30 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46794 * 2 1 4 4 H 1.09001 * 109.46769 * 55.00447 * 3 2 1 5 5 O 1.42894 * 109.47373 * 295.00092 * 3 2 1 6 6 C 1.50707 * 109.47097 * 175.00206 * 3 2 1 7 7 N 1.30291 * 126.34778 * 74.97847 * 6 3 2 8 8 N 1.28524 * 110.05504 * 180.02562 * 7 6 3 9 9 C 1.31217 * 109.85916 * 359.97438 * 8 7 6 10 10 N 1.38585 * 126.47418 * 179.74688 * 9 8 7 11 11 C 1.46901 * 110.99622 * 295.00718 * 10 9 8 12 12 C 1.46903 * 111.00185 * 58.96100 * 10 9 8 13 13 H 1.08993 * 109.47159 * 300.00031 * 12 10 9 14 14 C 1.52993 * 109.46937 * 60.00471 * 12 10 9 15 15 C 1.50706 * 109.46787 * 180.02562 * 12 10 9 16 16 H 1.07995 * 119.99835 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99681 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00121 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 119.99890 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46904 * 120.00146 * 19 17 15 22 22 H 1.48500 * 109.47494 * 240.00576 * 19 17 15 23 23 N 1.36456 * 107.05302 * 359.97438 * 9 8 7 24 24 C 1.46502 * 127.13578 * 179.97438 * 23 9 8 25 25 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47054 * 299.99456 * 1 2 3 27 27 H 1.08999 * 109.47599 * 59.99720 * 1 2 3 28 28 H 1.08997 * 109.47054 * 240.00544 * 2 1 3 29 29 H 1.08999 * 109.47599 * 120.00280 * 2 1 3 30 30 H 0.96701 * 114.00601 * 300.00046 * 5 3 2 31 31 H 1.09003 * 109.46611 * 66.15348 * 11 10 9 32 32 H 1.09003 * 109.47257 * 186.15140 * 11 10 9 33 33 H 1.08995 * 109.47204 * 306.15443 * 11 10 9 34 34 H 1.09007 * 109.47382 * 59.99783 * 14 12 10 35 35 H 1.09004 * 109.47049 * 180.02562 * 14 12 10 36 36 H 1.08999 * 109.47384 * 299.99988 * 14 12 10 37 37 H 0.96999 * 119.99908 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.47280 * 95.14865 * 24 23 9 39 39 H 1.08995 * 109.47049 * 215.15124 * 24 23 9 40 40 H 1.09000 * 109.46964 * 335.14710 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 3.5419 1.4444 0.1238 7 7 4.3944 1.1441 -0.8146 8 7 5.5954 1.2487 -0.3689 9 6 5.5732 1.6249 0.8880 10 7 6.6731 1.8374 1.7038 11 6 7.4093 0.5867 1.9312 12 6 7.5528 2.8716 1.1428 13 1 7.9026 2.5568 0.1597 14 6 6.7780 4.1843 1.0124 15 6 8.7352 3.0741 2.0550 16 1 8.8244 2.4924 2.9606 17 6 9.7036 4.0012 1.7329 18 7 9.5952 4.7091 0.6298 19 14 11.1688 4.2527 2.8638 20 1 11.0561 3.3407 4.0304 21 1 12.4218 3.9565 2.1238 22 1 11.1938 5.6604 3.3361 23 7 4.2624 1.7625 1.2414 24 6 3.7363 2.1654 2.5480 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0140 1.6544 -2.0139 31 1 7.8466 0.2467 0.9924 32 1 8.2015 0.7587 2.6598 33 1 6.7260 -0.1733 2.3100 34 1 6.4282 4.4991 1.9957 35 1 7.4306 4.9516 0.5957 36 1 5.9229 4.0376 0.3525 37 1 10.2762 5.3616 0.4034 38 1 3.5438 3.2382 2.5471 39 1 2.8081 1.6299 2.7468 40 1 4.4658 1.9278 3.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341900673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:44 Heat of formation + Delta-G solvation = 35.304033 kcal Electronic energy + Delta-G solvation = -21426.807812 eV Core-core repulsion = 18278.501870 eV Total energy + Delta-G solvation = -3148.305942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.57701 -37.91741 -36.87830 -34.61332 -33.04430 -32.83403 -29.92827 -29.24362 -27.42512 -26.35037 -25.41441 -24.35674 -22.42812 -21.64535 -20.64988 -19.49602 -17.21484 -16.64245 -16.18559 -16.08958 -15.65152 -15.14186 -14.98885 -14.57223 -13.78905 -13.40789 -13.27530 -13.17657 -12.89838 -12.49622 -12.36997 -12.30861 -11.89832 -11.42955 -11.24409 -11.17737 -11.16389 -10.97410 -10.79545 -10.47584 -10.36122 -10.28736 -10.13694 -10.06858 -9.75731 -9.10934 -8.55905 -8.50456 -7.76898 -6.09866 -4.16845 2.08160 2.63692 3.24294 3.25457 3.33312 3.36444 4.15143 4.30899 4.38858 4.60446 4.65536 4.75462 4.84273 5.12876 5.22329 5.23450 5.29528 5.48407 5.56984 5.69744 5.72519 5.77280 5.94616 6.03834 6.16994 6.29592 6.39598 6.56834 6.72386 6.83870 6.92244 7.09200 7.35013 7.46815 7.62169 7.71218 7.88405 8.15139 8.41401 8.86873 9.16103 9.48224 10.97149 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040363 B = 0.004526 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.537174 B = 6184.863233 C = 6328.514062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.208 3.792 4 H 0.109 0.891 5 O -0.546 6.546 6 C 0.118 3.882 7 N -0.283 5.283 8 N -0.317 5.317 9 C 0.386 3.614 10 N -0.474 5.474 11 C 0.051 3.949 12 C 0.225 3.775 13 H 0.022 0.978 14 C -0.130 4.130 15 C -0.512 4.512 16 H 0.067 0.933 17 C 0.062 3.938 18 N -0.887 5.887 19 Si 0.901 3.099 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.467 5.467 24 C 0.081 3.919 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.387 0.613 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.001 0.999 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 -7.334 3.193 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.146 3.854 4 H 0.127 0.873 5 O -0.350 6.350 6 C -0.150 4.150 7 N -0.125 5.125 8 N -0.161 5.161 9 C 0.031 3.969 10 N -0.201 5.201 11 C -0.097 4.097 12 C 0.121 3.879 13 H 0.040 0.960 14 C -0.188 4.188 15 C -0.551 4.551 16 H 0.085 0.915 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.161 5.161 24 C -0.063 4.063 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.236 0.764 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.254 -7.013 2.617 16.992 hybrid contribution 0.987 0.106 0.881 1.327 sum -14.267 -6.907 3.498 16.232 Atomic orbital electron populations 1.21709 0.94442 1.01763 1.02535 1.22194 0.96980 0.95759 1.03752 1.19994 0.82312 0.94026 0.89086 0.87335 1.86533 1.75291 1.57634 1.15565 1.25467 0.97947 1.06710 0.84908 1.73793 0.95815 1.18063 1.24844 1.74689 1.13348 1.20610 1.07429 1.22897 0.85311 0.98500 0.90239 1.59294 1.06900 1.10495 1.43443 1.22201 0.97552 0.88298 1.01623 1.19439 0.88452 0.85227 0.94802 0.96045 1.21802 0.97637 1.01130 0.98251 1.21083 1.04501 1.21847 1.07627 0.91468 1.24925 0.98228 0.95497 0.95348 1.69912 1.34688 1.24251 1.23699 0.86389 0.82138 0.78003 0.80557 1.19661 1.20964 1.20972 1.46232 1.06707 1.51136 1.12051 1.21974 1.00412 1.01511 0.82379 0.92495 0.92688 0.91735 0.90465 0.91085 0.76379 0.94575 0.89150 0.93881 0.94905 0.88945 0.97993 0.92744 0.90315 0.90274 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.81 37.16 0.36 -0.76 16 2 C -0.15 -1.41 5.60 -26.73 -0.15 -1.56 16 3 C 0.21 2.46 3.34 -27.88 -0.09 2.37 16 4 H 0.11 1.11 7.41 -51.93 -0.38 0.72 16 5 O -0.55 -6.85 12.86 -35.23 -0.45 -7.30 16 6 C 0.12 1.93 6.93 -154.02 -1.07 0.86 16 7 N -0.28 -5.63 12.10 32.99 0.40 -5.23 16 8 N -0.32 -7.21 12.12 30.32 0.37 -6.84 16 9 C 0.39 8.09 5.03 -318.86 -1.60 6.49 16 10 N -0.47 -10.33 4.63 -176.08 -0.81 -11.15 16 11 C 0.05 1.00 9.14 60.07 0.55 1.55 16 12 C 0.22 5.77 1.99 -68.86 -0.14 5.63 16 13 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 14 C -0.13 -3.29 8.84 37.15 0.33 -2.97 16 15 C -0.51 -13.59 7.95 -34.44 -0.27 -13.86 16 16 H 0.07 1.73 6.39 -52.49 -0.34 1.39 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.47 -7.92 3.21 -121.46 -0.39 -8.31 16 24 C 0.08 0.98 10.76 59.85 0.64 1.62 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.39 4.20 8.97 45.56 0.41 4.61 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.75 6.32 -51.93 -0.33 1.43 16 33 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 36 H 0.00 0.03 7.22 -51.93 -0.38 -0.35 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.66 7.76 -51.93 -0.40 0.26 16 40 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -32.13 329.35 -7.35 -39.48 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.49 Total: 2.25 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.53 Total: 0.96 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.19 Total: -56.07 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.45 Total: -7.30 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.13 -7.35 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341900673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.787 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds