Wall clock time and date at job start Mon Mar 30 2020 00:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46794 * 2 1 4 4 H 1.09001 * 109.46769 * 55.00447 * 3 2 1 5 5 O 1.42894 * 109.47373 * 295.00092 * 3 2 1 6 6 C 1.50707 * 109.47097 * 175.00206 * 3 2 1 7 7 N 1.30291 * 126.34778 * 74.97847 * 6 3 2 8 8 N 1.28524 * 110.05504 * 180.02562 * 7 6 3 9 9 C 1.31217 * 109.85916 * 359.97438 * 8 7 6 10 10 N 1.38585 * 126.47418 * 179.74688 * 9 8 7 11 11 C 1.46901 * 110.99622 * 295.00718 * 10 9 8 12 12 C 1.46903 * 111.00185 * 58.96100 * 10 9 8 13 13 H 1.08993 * 109.47159 * 300.00031 * 12 10 9 14 14 C 1.52993 * 109.46937 * 60.00471 * 12 10 9 15 15 C 1.50706 * 109.46787 * 180.02562 * 12 10 9 16 16 H 1.07995 * 119.99835 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99681 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00121 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 119.99890 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46904 * 120.00146 * 19 17 15 22 22 H 1.48500 * 109.47494 * 240.00576 * 19 17 15 23 23 N 1.36456 * 107.05302 * 359.97438 * 9 8 7 24 24 C 1.46502 * 127.13578 * 179.97438 * 23 9 8 25 25 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47054 * 299.99456 * 1 2 3 27 27 H 1.08999 * 109.47599 * 59.99720 * 1 2 3 28 28 H 1.08997 * 109.47054 * 240.00544 * 2 1 3 29 29 H 1.08999 * 109.47599 * 120.00280 * 2 1 3 30 30 H 0.96701 * 114.00601 * 300.00046 * 5 3 2 31 31 H 1.09003 * 109.46611 * 66.15348 * 11 10 9 32 32 H 1.09003 * 109.47257 * 186.15140 * 11 10 9 33 33 H 1.08995 * 109.47204 * 306.15443 * 11 10 9 34 34 H 1.09007 * 109.47382 * 59.99783 * 14 12 10 35 35 H 1.09004 * 109.47049 * 180.02562 * 14 12 10 36 36 H 1.08999 * 109.47384 * 299.99988 * 14 12 10 37 37 H 0.96999 * 119.99908 * 179.97438 * 18 17 15 38 38 H 1.08993 * 109.47280 * 95.14865 * 24 23 9 39 39 H 1.08995 * 109.47049 * 215.15124 * 24 23 9 40 40 H 1.09000 * 109.46964 * 335.14710 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 3.5419 1.4444 0.1238 7 7 4.3944 1.1441 -0.8146 8 7 5.5954 1.2487 -0.3689 9 6 5.5732 1.6249 0.8880 10 7 6.6731 1.8374 1.7038 11 6 7.4093 0.5867 1.9312 12 6 7.5528 2.8716 1.1428 13 1 7.9026 2.5568 0.1597 14 6 6.7780 4.1843 1.0124 15 6 8.7352 3.0741 2.0550 16 1 8.8244 2.4924 2.9606 17 6 9.7036 4.0012 1.7329 18 7 9.5952 4.7091 0.6298 19 14 11.1688 4.2527 2.8638 20 1 11.0561 3.3407 4.0304 21 1 12.4218 3.9565 2.1238 22 1 11.1938 5.6604 3.3361 23 7 4.2624 1.7625 1.2414 24 6 3.7363 2.1654 2.5480 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0140 1.6544 -2.0139 31 1 7.8466 0.2467 0.9924 32 1 8.2015 0.7587 2.6598 33 1 6.7260 -0.1733 2.3100 34 1 6.4282 4.4991 1.9957 35 1 7.4306 4.9516 0.5957 36 1 5.9229 4.0376 0.3525 37 1 10.2762 5.3616 0.4034 38 1 3.5438 3.2382 2.5471 39 1 2.8081 1.6299 2.7468 40 1 4.4658 1.9278 3.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341900673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:43 Heat of formation + Delta-G solvation = 12.524580 kcal Electronic energy + Delta-G solvation = -21427.795603 eV Core-core repulsion = 18278.501870 eV Total energy + Delta-G solvation = -3149.293733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.02119 -39.13992 -38.40050 -35.93361 -34.90954 -33.76336 -31.59551 -30.91544 -28.62844 -27.65043 -27.08015 -26.10566 -23.68922 -23.05377 -21.86689 -21.13275 -18.56439 -18.36866 -17.69139 -17.36377 -16.94876 -16.62648 -16.14434 -16.04100 -15.55633 -15.02031 -14.37229 -14.22120 -14.17141 -13.83689 -13.77124 -13.26177 -13.09003 -13.08012 -12.90140 -12.74845 -12.63107 -12.28225 -12.22698 -12.19075 -12.05743 -11.87396 -11.62044 -11.37800 -11.10670 -11.03666 -10.60697 -10.02304 -9.59268 -8.16096 -6.30825 0.68469 1.32246 1.44824 1.46422 1.58464 1.74340 2.41131 2.95409 3.13663 3.17891 3.42833 3.69268 3.90966 3.94262 4.12207 4.29296 4.35559 4.43599 4.55663 4.59892 4.66056 4.69839 4.77158 4.81390 4.85201 4.91977 5.00185 5.08075 5.11375 5.24576 5.33632 5.44393 5.51823 5.61581 5.84280 5.93722 6.11399 6.54765 6.58228 6.80254 7.38824 7.68375 8.91502 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040363 B = 0.004526 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.537174 B = 6184.863233 C = 6328.514062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.209 3.791 4 H 0.136 0.864 5 O -0.554 6.554 6 C 0.141 3.859 7 N -0.318 5.318 8 N -0.362 5.362 9 C 0.363 3.637 10 N -0.465 5.465 11 C 0.054 3.946 12 C 0.235 3.765 13 H -0.030 1.030 14 C -0.110 4.110 15 C -0.522 4.522 16 H 0.076 0.924 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.280 1.280 23 N -0.462 5.462 24 C 0.069 3.931 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.014 0.986 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.066 0.934 36 H -0.004 1.004 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.206 -7.845 5.410 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.147 3.853 4 H 0.153 0.847 5 O -0.359 6.359 6 C -0.129 4.129 7 N -0.159 5.159 8 N -0.205 5.205 9 C 0.005 3.995 10 N -0.191 5.191 11 C -0.093 4.093 12 C 0.129 3.871 13 H -0.012 1.012 14 C -0.169 4.169 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.796 3.204 20 H -0.182 1.182 21 H -0.211 1.211 22 H -0.206 1.206 23 N -0.156 5.156 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.242 0.758 31 H 0.033 0.967 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.015 0.985 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.077 -7.542 4.852 19.289 hybrid contribution 1.414 0.230 0.138 1.439 sum -15.664 -7.312 4.990 17.992 Atomic orbital electron populations 1.21679 0.92575 1.02676 1.02977 1.22136 0.98368 0.93813 1.03597 1.20449 0.79138 0.96037 0.89683 0.84683 1.86520 1.75044 1.58231 1.16109 1.26478 0.99528 1.03158 0.83709 1.73702 0.95522 1.20344 1.26342 1.74566 1.15278 1.21866 1.08824 1.22790 0.86366 1.00218 0.90110 1.59205 1.06642 1.10495 1.42786 1.22219 0.98192 0.88284 1.00618 1.19094 0.89240 0.86306 0.92453 1.01202 1.21550 0.96667 1.00380 0.98275 1.21369 1.04918 1.21865 1.07844 0.90556 1.25813 1.01078 0.95152 0.96694 1.70065 1.35707 1.24896 1.25518 0.85301 0.78184 0.78095 0.78807 1.18161 1.21054 1.20621 1.46458 1.05199 1.50162 1.13741 1.22408 1.02205 1.02709 0.79894 0.91391 0.91365 0.92181 0.91513 0.90461 0.75752 0.96701 0.88968 0.90874 0.93847 0.91522 0.98531 0.92751 0.89574 0.85670 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.81 71.98 0.71 -0.99 16 2 C -0.14 -2.29 5.60 30.59 0.17 -2.12 16 3 C 0.21 4.38 3.34 29.85 0.10 4.48 16 4 H 0.14 2.15 7.41 -2.39 -0.02 2.13 16 5 O -0.55 -12.86 12.86 -148.98 -1.92 -14.77 16 6 C 0.14 4.41 6.93 137.64 0.95 5.37 16 7 N -0.32 -12.76 12.10 -49.54 -0.60 -13.36 16 8 N -0.36 -16.92 12.12 -58.00 -0.70 -17.62 16 9 C 0.36 15.26 5.03 260.11 1.31 16.57 16 10 N -0.46 -20.38 4.63 -710.99 -3.29 -23.67 16 11 C 0.05 2.13 9.14 127.69 1.17 3.30 16 12 C 0.23 12.39 1.99 44.17 0.09 12.48 16 13 H -0.03 -1.85 8.08 -2.39 -0.02 -1.87 16 14 C -0.11 -5.73 8.84 71.98 0.64 -5.09 16 15 C -0.52 -27.89 7.95 25.60 0.20 -27.69 16 16 H 0.08 3.86 6.39 -2.91 -0.02 3.85 16 17 C 0.01 0.64 5.30 84.65 0.45 1.09 16 18 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 19 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 N -0.46 -14.96 3.21 -538.19 -1.73 -16.69 16 24 C 0.07 1.46 10.76 127.77 1.37 2.83 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.79 7.82 -2.39 -0.02 0.77 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.39 8.18 8.97 -74.06 -0.66 7.51 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 3.54 6.32 -2.39 -0.02 3.52 16 33 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16 34 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 36 H 0.00 -0.23 7.22 -2.39 -0.02 -0.24 16 37 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.13 1.48 7.76 -2.39 -0.02 1.46 16 40 H 0.10 2.17 8.11 -2.39 -0.02 2.15 16 Total: -1.00 -72.06 329.35 1.56 -70.50 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.37 Total: 14.39 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 7.16 Total: 10.22 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.08 Total: -124.77 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.92 Total: -14.77 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -72.06 1.56 -70.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341900673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.023 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds