Wall clock time and date at job start Mon Mar 30 2020 00:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 C 1.53004 * 109.47284 * 299.99691 * 3 2 1 5 5 C 1.52995 * 109.47146 * 300.00659 * 4 3 2 6 6 C 1.53008 * 109.47099 * 299.99262 * 5 4 3 7 7 C 1.50701 * 109.46972 * 179.97438 * 5 4 3 8 8 O 1.20825 * 120.00071 * 359.97438 * 7 5 4 9 9 O 1.34233 * 120.00152 * 179.97438 * 7 5 4 10 10 C 1.45194 * 116.99930 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46672 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46691 * 119.99941 * 17 15 13 20 20 H 1.48497 * 109.47025 * 240.00323 * 17 15 13 21 21 C 1.52997 * 109.47567 * 59.99514 * 5 4 3 22 22 C 1.52992 * 109.47234 * 300.00095 * 21 5 4 23 23 H 1.08995 * 109.46829 * 59.99660 * 1 2 3 24 24 H 1.08995 * 109.47441 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46468 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.47272 * 120.00182 * 2 1 3 27 27 H 1.09003 * 109.47209 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47244 * 59.99977 * 3 2 1 29 29 H 1.08995 * 109.47135 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46678 * 60.00066 * 4 3 2 31 31 H 1.08998 * 109.47041 * 300.01081 * 6 5 4 32 32 H 1.08999 * 109.46391 * 60.00205 * 6 5 4 33 33 H 1.08996 * 109.46829 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47510 * 60.00620 * 10 9 7 35 35 H 1.09001 * 109.47429 * 300.00326 * 10 9 7 36 36 H 1.09001 * 109.47002 * 299.99655 * 11 10 9 37 37 H 1.08993 * 109.46955 * 60.00092 * 11 10 9 38 38 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 39 39 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 40 40 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.46745 * 60.00271 * 21 5 4 42 42 H 1.08996 * 109.47244 * 180.02562 * 21 5 4 43 43 H 1.09003 * 109.47398 * 299.99776 * 22 21 5 44 44 H 1.09003 * 109.47381 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5302 2.1638 -1.2493 5 6 2.0401 1.4424 -2.4985 6 6 3.5701 1.4424 -2.4986 7 6 1.5373 2.1525 -3.7289 8 8 0.8421 3.1345 -3.6181 9 8 1.8618 1.6941 -4.9481 10 6 1.3427 2.4284 -6.0881 11 6 1.8140 1.7613 -7.3819 12 6 1.2675 2.5353 -8.5832 13 6 1.7323 1.8787 -9.8575 14 1 2.3548 0.9972 -9.8148 15 6 1.3618 2.4027 -11.0779 16 7 0.6033 3.4759 -11.1298 17 14 1.9373 1.5884 -12.6575 18 1 2.7727 0.4054 -12.3286 19 1 0.7580 1.1562 -13.4496 20 1 2.7384 2.5558 -13.4497 21 6 1.5300 0.0000 -2.4985 22 6 2.0400 -0.7213 -1.2493 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 0.8899 29 1 1.8939 3.1912 -1.2495 30 1 0.4401 2.1638 -1.2493 31 1 3.9335 2.4700 -2.4985 32 1 3.9334 0.9286 -1.6085 33 1 3.9333 0.9289 -3.3887 34 1 1.7063 3.4554 -6.0551 35 1 0.2531 2.4275 -6.0553 36 1 2.9035 1.7619 -7.4150 37 1 1.4500 0.7345 -7.4148 38 1 0.1780 2.5352 -8.5504 39 1 1.6318 3.5622 -8.5501 40 1 0.3431 3.8447 -11.9883 41 1 0.4400 0.0001 -2.4985 42 1 1.8937 -0.5140 -3.3882 43 1 3.1300 -0.7214 -1.2493 44 1 1.6762 -1.7488 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342591268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:44 Heat of formation + Delta-G solvation = -133.751195 kcal Electronic energy + Delta-G solvation = -20993.204951 eV Core-core repulsion = 17908.815817 eV Total energy + Delta-G solvation = -3084.389134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96799 -39.02771 -36.36799 -34.04516 -33.56388 -31.65340 -31.07028 -27.85089 -27.18956 -26.74576 -23.93283 -22.90331 -22.53542 -20.44101 -20.13254 -18.03517 -17.20527 -16.80177 -16.24388 -16.11257 -15.47311 -15.13598 -14.49400 -14.44609 -13.97151 -13.60901 -13.52085 -13.01415 -12.48779 -12.38378 -12.36484 -12.11452 -12.04032 -12.02434 -11.90551 -11.74137 -11.20268 -11.15474 -10.97942 -10.68011 -10.63423 -10.58715 -10.39328 -10.32123 -10.22953 -10.01161 -9.70611 -9.46175 -9.14102 -8.38933 -6.03437 -4.06363 2.40295 2.92603 3.30055 3.37422 3.41841 4.30789 4.41164 4.45430 4.47565 4.75600 4.83828 4.90718 5.06410 5.07267 5.27542 5.28737 5.31420 5.32574 5.46566 5.51372 5.59985 5.64130 5.69221 5.70216 5.73279 5.78581 5.82490 5.84607 5.92425 6.01208 6.03667 6.13517 6.17889 6.29598 6.55448 6.55947 6.88279 7.00338 7.60977 7.71917 7.94975 8.00673 8.36463 9.00198 9.57915 11.08081 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040784 B = 0.003118 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.374030 B = 8977.190180 C = 9162.700222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.048 4.048 6 C -0.145 4.145 7 C 0.464 3.536 8 O -0.513 6.513 9 O -0.355 6.355 10 C 0.067 3.933 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.111 4.111 22 C -0.114 4.114 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -7.161 23.741 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.152 4.152 4 C -0.139 4.139 5 C -0.049 4.049 6 C -0.202 4.202 7 C 0.306 3.694 8 O -0.401 6.401 9 O -0.271 6.271 10 C -0.006 4.006 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.148 4.148 22 C -0.151 4.151 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.222 -6.740 23.595 24.749 hybrid contribution 0.069 -0.103 -1.077 1.084 sum 3.291 -6.843 22.517 23.763 Atomic orbital electron populations 1.21965 0.95314 1.01671 1.02127 1.21134 0.96075 0.95959 0.98060 1.21631 1.00888 0.95259 0.97423 1.21498 1.01751 0.98864 0.91768 1.20495 0.97865 0.96355 0.90196 1.21961 0.91894 1.02823 1.03522 1.23629 0.77523 0.82781 0.85445 1.90637 1.35776 1.26135 1.87581 1.86492 1.69495 1.56050 1.15051 1.23485 0.98777 0.95554 0.82795 1.21748 1.01091 1.00271 0.91441 1.19057 0.96525 0.95395 0.90399 1.21215 1.31614 1.12365 0.90673 0.92377 1.25041 0.95119 0.95028 0.99339 1.69979 1.36248 1.21803 1.25337 0.86491 0.78520 0.79443 0.83298 1.19653 1.20975 1.20970 1.21620 1.01330 0.92564 0.99320 1.21608 1.01017 0.98845 0.93638 0.91931 0.92799 0.92843 0.91200 0.91423 0.91588 0.91154 0.90742 0.92211 0.90651 0.91004 0.91663 0.91672 0.92192 0.92190 0.96262 0.96263 0.92953 0.91154 0.90289 0.91262 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.50 37.16 0.32 -0.84 16 2 C -0.09 -0.67 3.19 -90.62 -0.29 -0.96 16 3 C -0.11 -0.87 5.18 -26.73 -0.14 -1.01 16 4 C -0.10 -1.04 3.75 -26.73 -0.10 -1.14 16 5 C -0.05 -0.54 0.71 -155.66 -0.11 -0.65 16 6 C -0.14 -1.40 7.71 37.16 0.29 -1.12 16 7 C 0.46 7.30 6.55 36.01 0.24 7.53 16 8 O -0.51 -9.49 15.73 -18.75 -0.29 -9.78 16 9 O -0.35 -6.07 10.03 -39.27 -0.39 -6.46 16 10 C 0.07 1.27 5.47 37.16 0.20 1.48 16 11 C -0.11 -2.28 5.53 -26.73 -0.15 -2.42 16 12 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 13 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 C -0.11 -1.10 4.39 -26.74 -0.12 -1.22 16 22 C -0.11 -0.86 5.18 -26.73 -0.14 -1.00 16 23 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.07 0.83 6.39 -51.93 -0.33 0.50 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.57 4.81 -51.93 -0.25 0.32 16 33 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 34 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 42 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -31.14 338.95 -8.12 -39.26 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.71 Total: -4.03 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.55 Total: -14.45 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.69 Total: -16.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.14 -8.12 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342591268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.491 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds