Wall clock time and date at job start Mon Mar 30 2020 00:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 C 1.53004 * 109.47284 * 299.99691 * 3 2 1 5 5 C 1.52995 * 109.47146 * 300.00659 * 4 3 2 6 6 C 1.53008 * 109.47099 * 299.99262 * 5 4 3 7 7 C 1.50701 * 109.46972 * 179.97438 * 5 4 3 8 8 O 1.20825 * 120.00071 * 359.97438 * 7 5 4 9 9 O 1.34233 * 120.00152 * 179.97438 * 7 5 4 10 10 C 1.45194 * 116.99930 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00129 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46672 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46691 * 119.99941 * 17 15 13 20 20 H 1.48497 * 109.47025 * 240.00323 * 17 15 13 21 21 C 1.52997 * 109.47567 * 59.99514 * 5 4 3 22 22 C 1.52992 * 109.47234 * 300.00095 * 21 5 4 23 23 H 1.08995 * 109.46829 * 59.99660 * 1 2 3 24 24 H 1.08995 * 109.47441 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46468 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.47272 * 120.00182 * 2 1 3 27 27 H 1.09003 * 109.47209 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47244 * 59.99977 * 3 2 1 29 29 H 1.08995 * 109.47135 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46678 * 60.00066 * 4 3 2 31 31 H 1.08998 * 109.47041 * 300.01081 * 6 5 4 32 32 H 1.08999 * 109.46391 * 60.00205 * 6 5 4 33 33 H 1.08996 * 109.46829 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47510 * 60.00620 * 10 9 7 35 35 H 1.09001 * 109.47429 * 300.00326 * 10 9 7 36 36 H 1.09001 * 109.47002 * 299.99655 * 11 10 9 37 37 H 1.08993 * 109.46955 * 60.00092 * 11 10 9 38 38 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 39 39 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 40 40 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.46745 * 60.00271 * 21 5 4 42 42 H 1.08996 * 109.47244 * 180.02562 * 21 5 4 43 43 H 1.09003 * 109.47398 * 299.99776 * 22 21 5 44 44 H 1.09003 * 109.47381 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5302 2.1638 -1.2493 5 6 2.0401 1.4424 -2.4985 6 6 3.5701 1.4424 -2.4986 7 6 1.5373 2.1525 -3.7289 8 8 0.8421 3.1345 -3.6181 9 8 1.8618 1.6941 -4.9481 10 6 1.3427 2.4284 -6.0881 11 6 1.8140 1.7613 -7.3819 12 6 1.2675 2.5353 -8.5832 13 6 1.7323 1.8787 -9.8575 14 1 2.3548 0.9972 -9.8148 15 6 1.3618 2.4027 -11.0779 16 7 0.6033 3.4759 -11.1298 17 14 1.9373 1.5884 -12.6575 18 1 2.7727 0.4054 -12.3286 19 1 0.7580 1.1562 -13.4496 20 1 2.7384 2.5558 -13.4497 21 6 1.5300 0.0000 -2.4985 22 6 2.0400 -0.7213 -1.2493 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 0.8899 29 1 1.8939 3.1912 -1.2495 30 1 0.4401 2.1638 -1.2493 31 1 3.9335 2.4700 -2.4985 32 1 3.9334 0.9286 -1.6085 33 1 3.9333 0.9289 -3.3887 34 1 1.7063 3.4554 -6.0551 35 1 0.2531 2.4275 -6.0553 36 1 2.9035 1.7619 -7.4150 37 1 1.4500 0.7345 -7.4148 38 1 0.1780 2.5352 -8.5504 39 1 1.6318 3.5622 -8.5501 40 1 0.3431 3.8447 -11.9883 41 1 0.4400 0.0001 -2.4985 42 1 1.8937 -0.5140 -3.3882 43 1 3.1300 -0.7214 -1.2493 44 1 1.6762 -1.7488 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342591268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:43 Heat of formation + Delta-G solvation = -149.283218 kcal Electronic energy + Delta-G solvation = -20993.878470 eV Core-core repulsion = 17908.815817 eV Total energy + Delta-G solvation = -3085.062653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09350 -40.02782 -37.80920 -35.96808 -34.46635 -33.60365 -31.79093 -29.17599 -28.37741 -27.62672 -25.57284 -23.91702 -23.60881 -22.20010 -21.27893 -18.88237 -18.69075 -18.24870 -17.73294 -17.59666 -16.50600 -16.29338 -15.92478 -15.68091 -15.10761 -14.71605 -14.41834 -14.25687 -13.94520 -13.82639 -13.62598 -13.24173 -13.05333 -13.04317 -12.85623 -12.72467 -12.60020 -12.51565 -12.35308 -12.10214 -12.00006 -11.84015 -11.71859 -11.45545 -11.43160 -11.26938 -11.06342 -10.92744 -10.85478 -10.59796 -8.23399 -6.35210 1.11759 1.40664 1.41108 1.54588 1.63665 2.40383 3.10485 3.41214 3.59590 3.68645 3.94951 4.00945 4.04014 4.13263 4.17161 4.19445 4.36950 4.38240 4.56971 4.62198 4.63523 4.75137 4.76150 4.81041 4.87854 4.98795 5.02850 5.03740 5.05223 5.12665 5.14282 5.17934 5.24287 5.38637 5.40871 5.47343 5.50035 5.53565 5.60542 5.63834 5.77943 6.17017 6.66718 6.80912 7.34490 8.89168 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040784 B = 0.003118 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.374030 B = 8977.190180 C = 9162.700222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.109 4.109 4 C -0.100 4.100 5 C -0.043 4.043 6 C -0.143 4.143 7 C 0.458 3.542 8 O -0.545 6.545 9 O -0.353 6.353 10 C 0.076 3.924 11 C -0.092 4.092 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.110 4.110 22 C -0.109 4.109 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.005 1.005 39 H -0.004 1.004 40 H 0.265 0.735 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -9.143 24.963 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.044 4.044 6 C -0.200 4.200 7 C 0.303 3.697 8 O -0.435 6.435 9 O -0.269 6.269 10 C 0.002 3.998 11 C -0.129 4.129 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.148 4.148 22 C -0.146 4.146 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.809 -8.736 24.839 26.766 hybrid contribution -0.477 0.559 -1.409 1.589 sum 4.332 -8.177 23.430 25.191 Atomic orbital electron populations 1.21972 0.95985 1.01833 1.01434 1.21157 0.95502 0.95649 0.98658 1.21636 1.01705 0.95307 0.95973 1.21504 1.00898 0.98635 0.92710 1.20690 0.99091 0.96743 0.87898 1.22003 0.90171 1.03012 1.04783 1.24757 0.76642 0.82504 0.85824 1.90621 1.37332 1.27778 1.87804 1.86493 1.69444 1.55718 1.15226 1.23116 0.98287 0.95183 0.83181 1.21441 1.01214 0.99807 0.90450 1.18939 0.95060 0.94791 0.92367 1.21646 1.31824 1.12784 0.91766 0.91593 1.26040 0.95049 0.95560 1.03361 1.70112 1.37443 1.23365 1.26523 0.85315 0.78230 0.78693 0.78308 1.18262 1.20374 1.20347 1.21643 1.00797 0.91643 1.00706 1.21618 1.01810 0.98969 0.92204 0.93831 0.92223 0.92374 0.89116 0.89934 0.90626 0.92317 0.92254 0.92602 0.87663 0.91456 0.92262 0.92347 0.91395 0.91441 0.98627 0.98601 0.92659 0.92185 0.90892 0.89838 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.50 71.98 0.61 -1.47 16 2 C -0.09 -1.03 3.19 -10.79 -0.03 -1.06 16 3 C -0.11 -1.36 5.18 30.59 0.16 -1.21 16 4 C -0.10 -1.97 3.75 30.59 0.11 -1.86 16 5 C -0.04 -0.94 0.71 -52.93 -0.04 -0.98 16 6 C -0.14 -2.48 7.71 71.98 0.56 -1.93 16 7 C 0.46 14.61 6.55 71.24 0.47 15.08 16 8 O -0.55 -20.86 15.73 21.97 0.35 -20.51 16 9 O -0.35 -12.13 10.03 -51.45 -0.52 -12.65 16 10 C 0.08 2.97 5.47 71.98 0.39 3.36 16 11 C -0.09 -3.90 5.53 30.60 0.17 -3.73 16 12 C 0.03 1.38 4.97 29.85 0.15 1.52 16 13 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 14 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 16 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 17 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.11 -2.05 4.39 30.59 0.13 -1.92 16 22 C -0.11 -1.32 5.18 30.59 0.16 -1.16 16 23 H 0.04 0.75 4.81 -2.39 -0.01 0.74 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.82 6.43 -2.39 -0.02 0.80 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 30 H 0.06 1.34 6.39 -2.39 -0.02 1.33 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.20 4.81 -2.39 -0.01 1.19 16 33 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 34 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.06 1.23 6.43 -2.39 -0.02 1.22 16 42 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 43 H 0.08 0.81 6.43 -2.39 -0.02 0.79 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -67.86 338.95 6.63 -61.23 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.95 Total: 8.58 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.53 Total: -25.82 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.17 Total: -33.16 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.86 6.63 -61.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342591268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.048 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds