Wall clock time and date at job start Mon Mar 30 2020 00:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46683 * 2 1 4 4 C 1.52994 * 109.47268 * 240.00025 * 2 1 3 5 5 C 1.50701 * 109.47172 * 59.99733 * 4 2 1 6 6 H 1.07998 * 120.00143 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99745 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99980 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00182 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46959 * 89.99910 * 9 7 5 11 11 H 1.48497 * 109.47215 * 209.99929 * 9 7 5 12 12 H 1.48504 * 109.47351 * 329.99933 * 9 7 5 13 13 C 1.53000 * 109.46967 * 119.99753 * 2 1 3 14 14 O 1.45206 * 109.46932 * 300.00030 * 13 2 1 15 15 C 1.34230 * 116.99657 * 179.97438 * 14 13 2 16 16 O 1.20824 * 120.00106 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99956 * 179.97438 * 15 14 13 18 18 H 1.08994 * 112.85688 * 272.71441 * 17 15 14 19 19 C 1.53784 * 113.61287 * 43.91636 * 17 15 14 20 20 C 1.53778 * 87.08481 * 139.98016 * 19 17 15 21 21 C 1.53780 * 113.61528 * 141.40880 * 17 15 14 22 22 C 1.53005 * 113.61308 * 334.56996 * 21 17 15 23 23 C 1.53001 * 113.61571 * 105.47283 * 21 17 15 24 24 H 1.08995 * 109.47425 * 300.00013 * 1 2 3 25 25 H 1.08998 * 109.47225 * 60.00297 * 1 2 3 26 26 H 1.09002 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46743 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47048 * 299.99811 * 3 2 1 29 29 H 1.08995 * 109.47201 * 59.99849 * 3 2 1 30 30 H 1.08998 * 109.47343 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47167 * 299.99639 * 4 2 1 32 32 H 0.97002 * 120.00474 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47249 * 60.00494 * 13 2 1 34 34 H 1.08997 * 109.47020 * 180.02562 * 13 2 1 35 35 H 1.09003 * 113.61265 * 254.52592 * 19 17 15 36 36 H 1.08999 * 113.61665 * 25.42676 * 19 17 15 37 37 H 1.08996 * 113.61959 * 89.11174 * 20 19 17 38 38 H 1.09000 * 113.61437 * 219.93683 * 20 19 17 39 39 H 1.08999 * 109.47215 * 66.98644 * 22 21 17 40 40 H 1.08999 * 109.47286 * 186.98411 * 22 21 17 41 41 H 1.09000 * 109.47207 * 306.98384 * 22 21 17 42 42 H 1.08993 * 109.47446 * 59.99984 * 23 21 17 43 43 H 1.09004 * 109.47297 * 180.02562 * 23 21 17 44 44 H 1.09000 * 109.46795 * 299.99731 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 1.4333 0.1385 -4.8058 9 14 2.9453 -2.0004 -3.9033 10 1 2.0867 -3.2111 -3.9493 11 1 3.7377 -1.9076 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0400 -0.7212 1.2493 14 8 1.5559 -0.0366 2.4348 15 6 1.9161 -0.5470 3.6229 16 8 2.6132 -1.5327 3.6707 17 6 1.4521 0.1102 4.8971 18 1 2.1181 0.9063 5.2298 19 6 -0.0310 0.5164 4.8761 20 6 -0.1021 0.0362 6.3352 21 6 1.0815 -0.8888 6.0059 22 6 0.6583 -2.2611 5.4780 23 6 2.1211 -0.9759 7.1251 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2492 32 1 1.6677 -0.1929 -5.6868 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7208 1.2495 35 1 -0.1884 1.5889 4.7612 36 1 -0.6365 -0.0770 4.1911 37 1 0.1390 0.8116 7.0624 38 1 -1.0217 -0.4976 6.5749 39 1 1.5139 -2.7514 5.0136 40 1 0.2941 -2.8717 6.3042 41 1 -0.1345 -2.1379 4.7402 42 1 2.2342 0.0020 7.5929 43 1 1.7926 -1.7000 7.8707 44 1 3.0775 -1.2922 6.7087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343408566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:13 Heat of formation + Delta-G solvation = -94.868883 kcal Electronic energy + Delta-G solvation = -21460.479716 eV Core-core repulsion = 18377.776646 eV Total energy + Delta-G solvation = -3082.703071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02614 -39.01936 -37.06091 -35.41404 -32.30125 -30.99011 -28.23608 -27.64469 -27.51467 -26.44121 -25.97513 -22.78563 -22.65312 -21.02315 -18.70677 -18.10027 -17.33408 -16.86839 -16.30696 -16.00644 -15.17186 -14.48187 -14.22642 -14.03142 -13.71260 -13.54541 -13.37006 -13.05282 -12.54687 -12.43962 -12.33789 -12.23291 -12.09511 -11.79199 -11.52523 -11.31333 -11.10538 -11.04639 -10.97445 -10.66584 -10.58961 -10.45754 -10.35085 -10.29537 -9.99172 -9.83884 -9.71854 -9.47279 -8.99283 -8.53980 -6.04259 -4.01583 2.38412 2.92170 3.30552 3.38559 3.42102 4.07890 4.21800 4.44963 4.47236 4.52093 4.95023 5.05037 5.22044 5.27621 5.33758 5.40333 5.42432 5.44303 5.51281 5.55483 5.66547 5.71633 5.75077 5.78470 5.86266 5.96470 6.00764 6.10974 6.15168 6.25519 6.28826 6.49933 6.58764 6.67704 6.81001 6.96349 7.06705 7.09436 7.21179 7.35387 7.76584 7.99887 8.53417 9.00310 9.57906 11.08458 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.004035 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.890401 B = 6937.650784 C = 7276.672428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.076 3.924 14 O -0.346 6.346 15 C 0.466 3.534 16 O -0.513 6.513 17 C -0.104 4.104 18 H 0.126 0.874 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.062 4.062 22 C -0.142 4.142 23 C -0.137 4.137 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -0.045 22.759 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.040 4.040 5 C -0.547 4.547 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.003 3.997 14 O -0.262 6.262 15 C 0.309 3.691 16 O -0.402 6.402 17 C -0.122 4.122 18 H 0.143 0.857 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.062 4.062 22 C -0.199 4.199 23 C -0.194 4.194 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.710 -0.348 22.521 22.589 hybrid contribution 0.797 -0.980 -0.406 1.327 sum -0.912 -1.328 22.115 22.174 Atomic orbital electron populations 1.21722 0.94396 1.00930 1.01348 1.20567 0.96444 0.96209 0.91680 1.21721 0.99873 0.95470 1.01345 1.19622 0.96265 0.95525 0.92637 1.21047 1.31856 1.13402 0.88425 0.90216 1.24986 0.95702 0.96735 0.95950 1.69896 1.45904 1.40523 0.97870 0.86870 0.81338 0.83969 0.77659 1.20337 1.21406 1.19096 1.23463 0.98767 0.95848 0.81650 1.86516 1.69350 1.55568 1.14753 1.23481 0.77144 0.82599 0.85844 1.90602 1.35666 1.25842 1.88065 1.22701 0.99153 0.99967 0.90421 0.85651 1.22835 0.93689 1.02463 0.97132 1.23064 0.98390 0.98938 0.96850 1.21750 0.95873 0.94617 0.93987 1.21813 1.02346 0.94821 1.00943 1.21748 0.98702 1.01730 0.97237 0.93956 0.91057 0.93907 0.93882 0.91058 0.93945 0.96427 0.96877 0.92759 0.91831 0.91821 0.90186 0.89213 0.89658 0.90754 0.90237 0.92187 0.92642 0.92450 0.92266 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.08 37.16 0.30 -2.08 16 2 C -0.05 -0.96 0.61 -154.51 -0.09 -1.06 16 3 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 4 C 0.00 -0.07 3.11 -27.89 -0.09 -0.16 16 5 C -0.51 -13.90 8.20 -34.44 -0.28 -14.18 16 6 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.08 1.36 4.32 37.16 0.16 1.52 16 14 O -0.35 -5.56 8.66 -39.26 -0.34 -5.90 16 15 C 0.47 6.86 6.63 36.00 0.24 7.09 16 16 O -0.51 -8.78 14.40 -18.75 -0.27 -9.05 16 17 C -0.10 -1.11 3.76 -90.96 -0.34 -1.45 16 18 H 0.13 1.14 8.10 -51.93 -0.42 0.72 16 19 C -0.12 -1.14 7.11 -25.92 -0.18 -1.32 16 20 C -0.14 -1.03 7.22 -25.92 -0.19 -1.22 16 21 C -0.06 -0.59 1.19 -153.69 -0.18 -0.77 16 22 C -0.14 -1.51 8.01 37.16 0.30 -1.21 16 23 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 24 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 25 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 29 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 34 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.91 7.55 -51.93 -0.39 0.52 16 37 H 0.08 0.54 7.96 -51.93 -0.41 0.12 16 38 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.08 1.03 6.20 -51.93 -0.32 0.70 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.60 7.31 -51.93 -0.38 0.22 16 42 H 0.06 0.40 7.94 -51.93 -0.41 -0.02 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -30.30 342.11 -7.04 -37.34 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.87 Total: -2.01 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 0.18 Total: -15.90 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.61 Total: -14.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.30 -7.04 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.533 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds