Wall clock time and date at job start Mon Mar 30 2020 00:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46683 * 2 1 4 4 C 1.52994 * 109.47268 * 240.00025 * 2 1 3 5 5 C 1.50701 * 109.47172 * 59.99733 * 4 2 1 6 6 H 1.07998 * 120.00143 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99745 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99980 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00182 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46959 * 89.99910 * 9 7 5 11 11 H 1.48497 * 109.47215 * 209.99929 * 9 7 5 12 12 H 1.48504 * 109.47351 * 329.99933 * 9 7 5 13 13 C 1.53000 * 109.46967 * 119.99753 * 2 1 3 14 14 O 1.45206 * 109.46932 * 300.00030 * 13 2 1 15 15 C 1.34230 * 116.99657 * 179.97438 * 14 13 2 16 16 O 1.20824 * 120.00106 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99956 * 179.97438 * 15 14 13 18 18 H 1.08994 * 112.85688 * 272.71441 * 17 15 14 19 19 C 1.53784 * 113.61287 * 43.91636 * 17 15 14 20 20 C 1.53778 * 87.08481 * 139.98016 * 19 17 15 21 21 C 1.53780 * 113.61528 * 141.40880 * 17 15 14 22 22 C 1.53005 * 113.61308 * 334.56996 * 21 17 15 23 23 C 1.53001 * 113.61571 * 105.47283 * 21 17 15 24 24 H 1.08995 * 109.47425 * 300.00013 * 1 2 3 25 25 H 1.08998 * 109.47225 * 60.00297 * 1 2 3 26 26 H 1.09002 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46743 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47048 * 299.99811 * 3 2 1 29 29 H 1.08995 * 109.47201 * 59.99849 * 3 2 1 30 30 H 1.08998 * 109.47343 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47167 * 299.99639 * 4 2 1 32 32 H 0.97002 * 120.00474 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47249 * 60.00494 * 13 2 1 34 34 H 1.08997 * 109.47020 * 180.02562 * 13 2 1 35 35 H 1.09003 * 113.61265 * 254.52592 * 19 17 15 36 36 H 1.08999 * 113.61665 * 25.42676 * 19 17 15 37 37 H 1.08996 * 113.61959 * 89.11174 * 20 19 17 38 38 H 1.09000 * 113.61437 * 219.93683 * 20 19 17 39 39 H 1.08999 * 109.47215 * 66.98644 * 22 21 17 40 40 H 1.08999 * 109.47286 * 186.98411 * 22 21 17 41 41 H 1.09000 * 109.47207 * 306.98384 * 22 21 17 42 42 H 1.08993 * 109.47446 * 59.99984 * 23 21 17 43 43 H 1.09004 * 109.47297 * 180.02562 * 23 21 17 44 44 H 1.09000 * 109.46795 * 299.99731 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 1.4333 0.1385 -4.8058 9 14 2.9453 -2.0004 -3.9033 10 1 2.0867 -3.2111 -3.9493 11 1 3.7377 -1.9076 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0400 -0.7212 1.2493 14 8 1.5559 -0.0366 2.4348 15 6 1.9161 -0.5470 3.6229 16 8 2.6132 -1.5327 3.6707 17 6 1.4521 0.1102 4.8971 18 1 2.1181 0.9063 5.2298 19 6 -0.0310 0.5164 4.8761 20 6 -0.1021 0.0362 6.3352 21 6 1.0815 -0.8888 6.0059 22 6 0.6583 -2.2611 5.4780 23 6 2.1211 -0.9759 7.1251 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2492 32 1 1.6677 -0.1929 -5.6868 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7208 1.2495 35 1 -0.1884 1.5889 4.7612 36 1 -0.6365 -0.0770 4.1911 37 1 0.1390 0.8116 7.0624 38 1 -1.0217 -0.4976 6.5749 39 1 1.5139 -2.7514 5.0136 40 1 0.2941 -2.8717 6.3042 41 1 -0.1345 -2.1379 4.7402 42 1 2.2342 0.0020 7.5929 43 1 1.7926 -1.7000 7.8707 44 1 3.0775 -1.2922 6.7087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343408566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:13 Heat of formation + Delta-G solvation = -110.136507 kcal Electronic energy + Delta-G solvation = -21461.141770 eV Core-core repulsion = 18377.776646 eV Total energy + Delta-G solvation = -3083.365125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04725 -40.06440 -38.50970 -36.84497 -34.41765 -31.72610 -30.00737 -28.76505 -28.38536 -28.00228 -27.24267 -24.54567 -23.45224 -22.20958 -19.93199 -19.35951 -18.92425 -18.45641 -17.53293 -17.15859 -16.26148 -15.97888 -15.54389 -15.46413 -14.98538 -14.86626 -14.34438 -14.25804 -14.17007 -13.92192 -13.58841 -13.19400 -13.07505 -12.89464 -12.84369 -12.69841 -12.53318 -12.31780 -12.29611 -12.13867 -11.90204 -11.82801 -11.73568 -11.43584 -11.36510 -11.30263 -11.06376 -10.95967 -10.81609 -10.73086 -8.24490 -6.25520 1.23879 1.34285 1.36619 1.46691 1.74730 2.36921 3.10188 3.30908 3.50893 3.65534 3.82821 3.88697 3.91041 4.01575 4.16182 4.25314 4.50468 4.52576 4.55748 4.65621 4.67308 4.73284 4.80897 4.93681 4.95712 4.96947 4.97663 5.07473 5.08809 5.10299 5.19979 5.24912 5.28139 5.34895 5.38265 5.44393 5.51493 5.52379 5.58387 5.61800 5.73939 6.35255 6.78629 6.82194 7.36908 8.91198 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.004035 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.890401 B = 6937.650784 C = 7276.672428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.048 4.048 3 C -0.120 4.120 4 C -0.002 4.002 5 C -0.505 4.505 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.253 1.253 13 C 0.086 3.914 14 O -0.346 6.346 15 C 0.463 3.537 16 O -0.540 6.540 17 C -0.107 4.107 18 H 0.147 0.853 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.067 4.067 22 C -0.142 4.142 23 C -0.135 4.135 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -0.170 25.578 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.048 4.048 3 C -0.178 4.178 4 C -0.040 4.040 5 C -0.543 4.543 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.176 1.176 13 C 0.012 3.988 14 O -0.262 6.262 15 C 0.308 3.692 16 O -0.430 6.430 17 C -0.126 4.126 18 H 0.164 0.836 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.067 4.067 22 C -0.199 4.199 23 C -0.192 4.192 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.644 -0.471 25.366 25.424 hybrid contribution 0.732 -0.900 -1.231 1.692 sum -0.912 -1.372 24.135 24.191 Atomic orbital electron populations 1.21636 0.93801 1.01045 1.01224 1.20445 0.96912 0.96337 0.91156 1.21639 0.99932 0.94956 1.01226 1.19565 0.96045 0.95537 0.92844 1.21301 1.30560 1.12428 0.89995 0.93049 1.25826 0.97372 0.99958 0.95740 1.70035 1.47964 1.42611 0.98473 0.85884 0.79835 0.80282 0.78021 1.19518 1.21182 1.17636 1.23097 0.98431 0.95432 0.81861 1.86514 1.69467 1.55433 1.14811 1.24405 0.76308 0.82296 0.86207 1.90599 1.36991 1.27195 1.88251 1.23036 1.00423 1.00801 0.88336 0.83588 1.22863 0.92074 1.03125 0.98119 1.23029 0.97710 0.98661 0.96150 1.21836 0.97139 0.93901 0.93803 1.21784 1.00928 0.95941 1.01250 1.21744 0.97367 1.03110 0.96973 0.91560 0.93580 0.93687 0.93694 0.93564 0.91563 0.96516 0.96649 0.92714 0.92063 0.92090 0.88856 0.90530 0.87437 0.89929 0.93036 0.90545 0.93383 0.90526 0.91329 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.08 71.98 0.58 -3.86 16 2 C -0.05 -1.87 0.61 -52.18 -0.03 -1.90 16 3 C -0.12 -4.48 8.08 71.98 0.58 -3.90 16 4 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 5 C -0.50 -28.05 8.20 25.60 0.21 -27.84 16 6 H 0.05 3.09 5.92 -2.91 -0.02 3.07 16 7 C 0.01 0.44 5.47 84.66 0.46 0.90 16 8 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 9 Si 0.94 44.60 27.47 68.60 1.88 46.48 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.25 -11.38 6.54 99.48 0.65 -10.72 16 13 C 0.09 2.96 4.32 71.98 0.31 3.28 16 14 O -0.35 -10.55 8.66 -51.41 -0.45 -11.00 16 15 C 0.46 12.97 6.63 71.23 0.47 13.44 16 16 O -0.54 -18.20 14.40 21.97 0.32 -17.88 16 17 C -0.11 -2.02 3.76 -11.01 -0.04 -2.06 16 18 H 0.15 2.17 8.10 -2.39 -0.02 2.15 16 19 C -0.12 -1.92 7.11 31.12 0.22 -1.69 16 20 C -0.12 -1.36 7.22 31.12 0.22 -1.14 16 21 C -0.07 -1.09 1.19 -51.65 -0.06 -1.15 16 22 C -0.14 -2.83 8.01 71.98 0.58 -2.25 16 23 C -0.13 -1.88 9.20 71.98 0.66 -1.22 16 24 H 0.07 2.11 7.68 -2.39 -0.02 2.09 16 25 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 29 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 30 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 31 H 0.02 0.70 7.57 -2.39 -0.02 0.69 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.40 7.55 -2.39 -0.02 1.38 16 37 H 0.11 0.82 7.96 -2.39 -0.02 0.80 16 38 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.05 1.32 6.20 -2.39 -0.01 1.31 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.00 7.31 -2.39 -0.02 0.98 16 42 H 0.08 0.77 7.94 -2.39 -0.02 0.75 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 44 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -66.18 342.11 7.21 -58.97 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.89 Total: 11.55 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.26 Total: -29.43 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.13 Total: -28.88 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -66.18 7.21 -58.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.167 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds