Wall clock time and date at job start Mon Mar 30 2020 00:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47320 * 2 1 4 4 C 1.53007 * 109.47080 * 119.99768 * 2 1 3 5 5 C 1.50692 * 109.47246 * 299.99947 * 4 2 1 6 6 H 1.08005 * 119.99880 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00531 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00616 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47268 * 59.99453 * 9 7 5 11 11 H 1.48493 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46650 * 299.99924 * 9 7 5 13 13 C 1.53001 * 109.47167 * 239.99774 * 2 1 3 14 14 O 1.45195 * 109.46971 * 59.99915 * 13 2 1 15 15 C 1.34233 * 117.00088 * 180.02562 * 14 13 2 16 16 O 1.20827 * 119.99620 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00282 * 180.02562 * 15 14 13 18 18 H 1.09004 * 112.84926 * 312.40787 * 17 15 14 19 19 C 1.53782 * 113.61469 * 181.10174 * 17 15 14 20 20 C 1.53780 * 87.08170 * 220.01759 * 19 17 15 21 21 C 1.53778 * 113.61612 * 83.60436 * 17 15 14 22 22 C 1.52998 * 113.61597 * 254.53084 * 21 17 15 23 23 C 1.53008 * 113.61435 * 25.43155 * 21 17 15 24 24 H 1.09001 * 109.47005 * 299.99909 * 1 2 3 25 25 H 1.08998 * 109.47241 * 60.00298 * 1 2 3 26 26 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46720 * 300.00021 * 3 2 1 29 29 H 1.08999 * 109.47315 * 59.99190 * 3 2 1 30 30 H 1.09000 * 109.47160 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46916 * 60.00151 * 4 2 1 32 32 H 0.96996 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47144 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46860 * 299.99895 * 13 2 1 35 35 H 1.08998 * 113.61311 * 334.56904 * 19 17 15 36 36 H 1.08998 * 113.61151 * 105.46772 * 19 17 15 37 37 H 1.09004 * 113.61520 * 270.88620 * 20 19 17 38 38 H 1.08995 * 113.68705 * 139.98909 * 20 19 17 39 39 H 1.09008 * 109.47267 * 60.00023 * 22 21 17 40 40 H 1.09000 * 109.47128 * 179.97438 * 22 21 17 41 41 H 1.08996 * 109.47025 * 299.99975 * 22 21 17 42 42 H 1.09007 * 109.46372 * 54.67130 * 23 21 17 43 43 H 1.08995 * 109.47343 * 174.66735 * 23 21 17 44 44 H 1.08994 * 109.47146 * 294.67709 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8712 -0.4815 3.7321 8 7 2.6273 -1.5508 3.8527 9 14 1.2480 0.3987 5.2573 10 1 -0.2371 0.3977 5.2573 11 1 1.7430 -0.3011 6.4697 12 1 1.7420 1.7992 5.2570 13 6 2.0400 -0.7213 -1.2492 14 8 1.5560 -0.0369 -2.4347 15 6 1.9162 -0.5473 -3.6228 16 8 2.6133 -1.5330 -3.6705 17 6 1.4522 0.1098 -4.8972 18 1 0.3856 0.3346 -4.8934 19 6 1.9274 -0.6104 -6.1701 20 6 2.1649 0.7831 -6.7753 21 6 2.3298 1.2944 -5.3344 22 6 1.6830 2.6593 -5.0906 23 6 3.7676 1.2158 -4.8170 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7216 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 2.8622 -1.8817 4.7337 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2491 35 1 2.8416 -1.1872 -6.0299 36 1 1.1416 -1.1759 -6.6709 37 1 1.2931 1.1916 -7.2864 38 1 3.0755 0.8528 -7.3702 39 1 1.4799 2.7803 -4.0264 40 1 2.3596 3.4466 -5.4228 41 1 0.7487 2.7234 -5.6483 42 1 4.2079 0.2630 -5.1111 43 1 4.3517 2.0324 -5.2414 44 1 3.7674 1.2958 -3.7300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343408567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:16 Heat of formation + Delta-G solvation = -100.757834 kcal Electronic energy + Delta-G solvation = -21499.918994 eV Core-core repulsion = 18416.960559 eV Total energy + Delta-G solvation = -3082.958435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.97520 -38.96293 -36.94410 -35.29877 -32.32519 -30.91163 -28.07106 -27.62882 -27.01716 -26.39437 -25.89491 -23.13415 -22.61958 -20.98832 -18.56718 -18.06961 -17.46780 -16.38966 -16.17754 -15.94977 -15.13545 -14.55286 -14.37144 -14.00172 -13.50429 -13.38962 -13.26971 -12.92642 -12.46832 -12.38973 -12.24076 -12.06787 -12.04184 -11.68790 -11.58819 -11.24148 -11.03660 -10.94575 -10.84895 -10.65219 -10.58286 -10.38283 -10.30818 -10.23060 -10.22117 -9.99546 -9.71001 -9.18282 -8.94154 -8.35817 -6.00137 -4.01353 2.42293 3.02315 3.33059 3.37980 3.39950 4.16143 4.25598 4.44444 4.49014 4.52408 4.97483 5.16258 5.28240 5.35370 5.36526 5.38851 5.53390 5.54150 5.54402 5.56394 5.69401 5.72224 5.81691 5.84644 5.89114 5.99642 6.09098 6.16591 6.21664 6.26111 6.40416 6.52944 6.67273 6.72213 6.89359 7.12136 7.13205 7.15494 7.61631 7.73776 7.98060 8.06892 8.40644 9.02802 9.61618 11.11545 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.003917 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.759686 B = 7146.517684 C = 7392.413881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.078 3.922 14 O -0.349 6.349 15 C 0.467 3.533 16 O -0.515 6.515 17 C -0.107 4.107 18 H 0.121 0.879 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.066 4.066 22 C -0.139 4.139 23 C -0.139 4.139 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 6.451 -19.943 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 O -0.265 6.265 15 C 0.311 3.689 16 O -0.404 6.404 17 C -0.126 4.126 18 H 0.138 0.862 19 C -0.158 4.158 20 C -0.170 4.170 21 C -0.066 4.066 22 C -0.196 4.196 23 C -0.196 4.196 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.713 6.035 -19.765 20.737 hybrid contribution -0.228 0.137 1.107 1.138 sum -1.941 6.172 -18.659 19.748 Atomic orbital electron populations 1.21708 0.94892 1.00884 1.00780 1.20797 0.96095 0.96175 0.92766 1.21702 0.99947 0.95773 1.00772 1.19119 0.96335 0.95273 0.89476 1.21118 1.31237 1.12147 0.90324 0.92144 1.25013 0.95289 0.95084 0.99098 1.69957 1.36933 1.23047 1.23589 0.86677 0.79187 0.79765 0.82496 1.20262 1.21381 1.20259 1.23466 0.98793 0.95887 0.81358 1.86506 1.69296 1.55778 1.14874 1.23401 0.77464 0.82201 0.85884 1.90628 1.35861 1.25792 1.88108 1.22742 1.02125 0.98194 0.89524 0.86153 1.22867 1.02668 0.96700 0.93535 1.23026 1.02404 0.96081 0.95467 1.21762 0.95372 0.93642 0.95824 1.21780 1.00125 0.95013 1.02708 1.21709 0.93757 1.02463 1.01632 0.91612 0.94215 0.93825 0.93850 0.94212 0.91631 0.96401 0.96405 0.92964 0.91827 0.91810 0.88558 0.90671 0.89639 0.90730 0.91571 0.92235 0.92311 0.91866 0.91673 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 2 C -0.06 -1.19 0.61 -154.51 -0.09 -1.29 16 3 C -0.12 -2.39 8.08 37.16 0.30 -2.09 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.83 7.65 -34.44 -0.26 -14.09 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.08 1.49 4.32 37.16 0.16 1.65 16 14 O -0.35 -5.90 8.88 -39.27 -0.35 -6.25 16 15 C 0.47 7.26 5.97 36.00 0.22 7.48 16 16 O -0.51 -9.36 15.64 -18.75 -0.29 -9.65 16 17 C -0.11 -1.20 3.77 -90.96 -0.34 -1.54 16 18 H 0.12 1.18 8.10 -51.93 -0.42 0.75 16 19 C -0.12 -1.17 7.06 -25.92 -0.18 -1.35 16 20 C -0.13 -1.04 7.22 -25.92 -0.19 -1.23 16 21 C -0.07 -0.64 1.31 -153.69 -0.20 -0.84 16 22 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 23 C -0.14 -1.49 8.11 37.16 0.30 -1.19 16 24 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 25 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 29 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 34 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 35 H 0.10 1.08 6.89 -51.93 -0.36 0.72 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.55 7.96 -51.93 -0.41 0.14 16 38 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 42 H 0.06 0.72 7.31 -51.93 -0.38 0.34 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 347.50 15.07 5.24 5.24 Total: -1.00 -30.20 347.50 -7.50 -37.70 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.95 Total: -2.25 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 0.14 Total: -15.22 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.64 Total: -15.90 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.20 -7.50 -37.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.059 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds