Wall clock time and date at job start Mon Mar 30 2020 00:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47320 * 2 1 4 4 C 1.53007 * 109.47080 * 119.99768 * 2 1 3 5 5 C 1.50692 * 109.47246 * 299.99947 * 4 2 1 6 6 H 1.08005 * 119.99880 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00531 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00616 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47268 * 59.99453 * 9 7 5 11 11 H 1.48493 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46650 * 299.99924 * 9 7 5 13 13 C 1.53001 * 109.47167 * 239.99774 * 2 1 3 14 14 O 1.45195 * 109.46971 * 59.99915 * 13 2 1 15 15 C 1.34233 * 117.00088 * 180.02562 * 14 13 2 16 16 O 1.20827 * 119.99620 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00282 * 180.02562 * 15 14 13 18 18 H 1.09004 * 112.84926 * 312.40787 * 17 15 14 19 19 C 1.53782 * 113.61469 * 181.10174 * 17 15 14 20 20 C 1.53780 * 87.08170 * 220.01759 * 19 17 15 21 21 C 1.53778 * 113.61612 * 83.60436 * 17 15 14 22 22 C 1.52998 * 113.61597 * 254.53084 * 21 17 15 23 23 C 1.53008 * 113.61435 * 25.43155 * 21 17 15 24 24 H 1.09001 * 109.47005 * 299.99909 * 1 2 3 25 25 H 1.08998 * 109.47241 * 60.00298 * 1 2 3 26 26 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46720 * 300.00021 * 3 2 1 29 29 H 1.08999 * 109.47315 * 59.99190 * 3 2 1 30 30 H 1.09000 * 109.47160 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46916 * 60.00151 * 4 2 1 32 32 H 0.96996 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47144 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46860 * 299.99895 * 13 2 1 35 35 H 1.08998 * 113.61311 * 334.56904 * 19 17 15 36 36 H 1.08998 * 113.61151 * 105.46772 * 19 17 15 37 37 H 1.09004 * 113.61520 * 270.88620 * 20 19 17 38 38 H 1.08995 * 113.68705 * 139.98909 * 20 19 17 39 39 H 1.09008 * 109.47267 * 60.00023 * 22 21 17 40 40 H 1.09000 * 109.47128 * 179.97438 * 22 21 17 41 41 H 1.08996 * 109.47025 * 299.99975 * 22 21 17 42 42 H 1.09007 * 109.46372 * 54.67130 * 23 21 17 43 43 H 1.08995 * 109.47343 * 174.66735 * 23 21 17 44 44 H 1.08994 * 109.47146 * 294.67709 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8712 -0.4815 3.7321 8 7 2.6273 -1.5508 3.8527 9 14 1.2480 0.3987 5.2573 10 1 -0.2371 0.3977 5.2573 11 1 1.7430 -0.3011 6.4697 12 1 1.7420 1.7992 5.2570 13 6 2.0400 -0.7213 -1.2492 14 8 1.5560 -0.0369 -2.4347 15 6 1.9162 -0.5473 -3.6228 16 8 2.6133 -1.5330 -3.6705 17 6 1.4522 0.1098 -4.8972 18 1 0.3856 0.3346 -4.8934 19 6 1.9274 -0.6104 -6.1701 20 6 2.1649 0.7831 -6.7753 21 6 2.3298 1.2944 -5.3344 22 6 1.6830 2.6593 -5.0906 23 6 3.7676 1.2158 -4.8170 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7216 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 2.8622 -1.8817 4.7337 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2491 35 1 2.8416 -1.1872 -6.0299 36 1 1.1416 -1.1759 -6.6709 37 1 1.2931 1.1916 -7.2864 38 1 3.0755 0.8528 -7.3702 39 1 1.4799 2.7803 -4.0264 40 1 2.3596 3.4466 -5.4228 41 1 0.7487 2.7234 -5.6483 42 1 4.2079 0.2630 -5.1111 43 1 4.3517 2.0324 -5.2414 44 1 3.7674 1.2958 -3.7300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343408567.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:15 Heat of formation + Delta-G solvation = -115.476632 kcal Electronic energy + Delta-G solvation = -21500.557249 eV Core-core repulsion = 18416.960559 eV Total energy + Delta-G solvation = -3083.596690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07436 -40.08709 -38.48379 -36.84154 -34.41835 -31.66689 -29.57132 -28.71380 -28.39598 -27.98284 -27.25698 -24.99474 -23.48557 -22.18515 -19.99568 -19.25810 -18.70349 -18.34440 -17.53856 -17.26634 -16.52595 -15.96097 -15.48677 -15.33894 -14.92160 -14.75094 -14.38507 -14.11916 -13.97080 -13.89793 -13.61001 -13.23744 -12.97788 -12.95292 -12.77801 -12.66565 -12.40444 -12.33594 -12.33047 -12.26099 -12.02981 -11.89922 -11.84513 -11.47810 -11.38352 -11.20369 -11.05044 -10.96785 -10.86458 -10.53065 -8.16487 -6.24838 1.18715 1.42153 1.44769 1.52009 1.74344 2.43781 3.17875 3.38333 3.42678 3.62293 3.78433 3.90350 3.91192 4.03070 4.19649 4.23896 4.49705 4.53991 4.56797 4.61385 4.67962 4.72214 4.78168 4.94012 4.95863 4.99213 5.01626 5.06462 5.09327 5.10844 5.18818 5.29130 5.40014 5.42794 5.44617 5.45582 5.51140 5.54126 5.54670 5.72155 5.85636 6.26583 6.76560 6.88764 7.42949 8.96139 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.003917 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.759686 B = 7146.517684 C = 7392.413881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.055 4.055 3 C -0.117 4.117 4 C 0.041 3.959 5 C -0.517 4.517 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.089 3.911 14 O -0.345 6.345 15 C 0.464 3.536 16 O -0.547 6.547 17 C -0.111 4.111 18 H 0.144 0.856 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.067 4.067 22 C -0.137 4.137 23 C -0.139 4.139 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.056 0.944 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 8.735 -21.701 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.055 4.055 3 C -0.174 4.174 4 C 0.003 3.997 5 C -0.555 4.555 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.015 3.985 14 O -0.261 6.261 15 C 0.309 3.691 16 O -0.438 6.438 17 C -0.129 4.129 18 H 0.161 0.839 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.067 4.067 22 C -0.194 4.194 23 C -0.197 4.197 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.356 8.339 -21.544 23.344 hybrid contribution 0.330 -0.622 1.582 1.732 sum -3.026 7.716 -19.962 21.614 Atomic orbital electron populations 1.21635 0.93451 1.00820 1.01652 1.20619 0.97159 0.96542 0.91143 1.21618 0.99537 0.94650 1.01600 1.18977 0.94377 0.94273 0.92026 1.21503 1.30772 1.12271 0.90915 0.90965 1.25955 0.95511 0.95824 1.02720 1.70112 1.38592 1.24904 1.24311 0.85555 0.79008 0.78762 0.78081 1.19075 1.21469 1.19064 1.23062 0.97924 0.95285 0.82252 1.86503 1.69275 1.55516 1.14811 1.24447 0.76561 0.81775 0.86334 1.90618 1.37397 1.27417 1.88350 1.23118 1.03613 0.99126 0.87091 0.83876 1.22895 1.02207 0.97907 0.93017 1.22999 1.03962 0.93891 0.94236 1.21830 0.94065 0.93755 0.97073 1.21781 1.01205 0.94339 1.02046 1.21714 0.95301 1.02561 1.00086 0.92433 0.91470 0.94416 0.94512 0.91532 0.92455 0.99399 0.99378 0.93031 0.93066 0.92951 0.90717 0.89058 0.87091 0.89775 0.93143 0.91180 0.90362 0.93170 0.89719 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.08 71.98 0.58 -3.88 16 2 C -0.05 -2.26 0.61 -52.18 -0.03 -2.29 16 3 C -0.12 -4.41 8.08 71.98 0.58 -3.82 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.52 -28.37 7.65 25.60 0.20 -28.18 16 6 H 0.07 3.73 5.68 -2.91 -0.02 3.71 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 9 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.09 3.47 4.32 71.98 0.31 3.78 16 14 O -0.35 -11.51 8.88 -51.45 -0.46 -11.97 16 15 C 0.46 14.26 5.97 71.23 0.43 14.69 16 16 O -0.55 -20.40 15.64 21.96 0.34 -20.05 16 17 C -0.11 -2.26 3.77 -11.02 -0.04 -2.30 16 18 H 0.14 2.30 8.10 -2.38 -0.02 2.28 16 19 C -0.12 -2.13 7.06 31.12 0.22 -1.91 16 20 C -0.11 -1.38 7.22 31.12 0.22 -1.16 16 21 C -0.07 -1.13 1.31 -51.65 -0.07 -1.20 16 22 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 23 C -0.14 -2.88 8.11 71.98 0.58 -2.30 16 24 H 0.06 2.25 6.62 -2.39 -0.02 2.23 16 25 H 0.07 2.15 7.68 -2.39 -0.02 2.13 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 29 H 0.06 2.24 6.62 -2.39 -0.02 2.23 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 34 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.07 1.64 6.89 -2.39 -0.02 1.62 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 0.86 7.96 -2.39 -0.02 0.84 16 38 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.80 7.94 -2.39 -0.02 0.78 16 42 H 0.05 1.14 7.31 -2.38 -0.02 1.13 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.04 0.94 7.67 -2.39 -0.02 0.92 16 Total: -1.00 -67.03 347.50 7.37 -59.66 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.94 Total: 10.86 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 4.23 Total: -27.27 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.20 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.11 Total: -32.02 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.03 7.37 -59.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408567.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.816 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds