Wall clock time and date at job start Mon Mar 30 2020 00:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.52999 * 109.46853 * 240.00160 * 2 1 3 5 5 C 1.50701 * 109.47172 * 60.00409 * 4 2 1 6 6 H 1.07995 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31523 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47171 * 89.99636 * 9 7 5 11 11 H 1.48492 * 109.47190 * 209.99867 * 9 7 5 12 12 H 1.48495 * 109.47067 * 330.00151 * 9 7 5 13 13 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 14 14 O 1.45202 * 109.46919 * 300.00395 * 13 2 1 15 15 C 1.34230 * 116.99836 * 180.02562 * 14 13 2 16 16 O 1.20833 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00262 * 180.27336 * 15 14 13 18 18 C 1.52996 * 109.47491 * 179.72204 * 17 15 14 19 19 C 1.53003 * 109.47301 * 179.97438 * 18 17 15 20 20 C 1.53003 * 115.54527 * 34.33100 * 19 18 17 21 21 C 1.52995 * 117.49946 * 248.62295 * 19 18 17 22 22 C 1.52999 * 117.50154 * 179.97438 * 19 18 17 23 23 H 1.08996 * 109.47459 * 300.00192 * 1 2 3 24 24 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 25 25 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47549 * 299.99975 * 3 2 1 28 28 H 1.09005 * 109.47490 * 60.00171 * 3 2 1 29 29 H 1.09006 * 109.46823 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47249 * 300.00051 * 4 2 1 31 31 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47242 * 179.97438 * 13 2 1 33 33 H 1.09004 * 109.46797 * 59.99640 * 13 2 1 34 34 H 1.09004 * 109.46801 * 299.72165 * 17 15 14 35 35 H 1.09000 * 109.47461 * 59.71633 * 17 15 14 36 36 H 1.09004 * 109.47066 * 299.99799 * 18 17 15 37 37 H 1.08994 * 109.47405 * 59.99969 * 18 17 15 38 38 H 1.09000 * 109.47323 * 85.58879 * 20 19 18 39 39 H 1.09004 * 109.46587 * 205.58458 * 20 19 18 40 40 H 1.08996 * 109.47317 * 325.57675 * 20 19 18 41 41 H 1.08996 * 117.49725 * 359.97438 * 21 19 18 42 42 H 1.08991 * 117.49863 * 145.02227 * 21 19 18 43 43 H 1.08999 * 117.49803 * 214.98622 * 22 19 18 44 44 H 1.09006 * 117.49560 * 359.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6281 -1.5503 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 2.2255 1.4413 -5.6613 11 1 1.0838 -0.5804 -6.3615 12 1 -0.0605 1.0354 -4.9614 13 6 2.0400 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9170 -0.5466 3.6228 16 8 2.6142 -1.5324 3.6705 17 6 1.4475 0.1065 4.8971 18 6 1.9905 -0.6700 6.0984 19 6 1.5142 -0.0065 7.3922 20 6 0.1187 0.6186 7.3382 21 6 2.5667 0.6876 8.2590 22 6 1.9540 -0.6391 8.7140 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6766 -1.7488 -1.2493 31 1 2.8630 -1.8812 -4.7337 32 1 3.1300 -0.7216 1.2489 33 1 1.6766 -1.7489 1.2491 34 1 1.8107 1.1336 4.9341 35 1 0.3579 0.1053 4.9260 36 1 1.6273 -1.6971 6.0613 37 1 3.0800 -0.6686 6.0696 38 1 -0.6295 -0.1439 7.5548 39 1 0.0492 1.4163 8.0778 40 1 -0.0575 1.0287 6.3439 41 1 3.5984 0.6711 7.9079 42 1 2.2651 1.5897 8.7911 43 1 1.2495 -0.6094 9.5452 44 1 2.5823 -1.5283 8.6619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344882890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:39 Heat of formation + Delta-G solvation = -97.819593 kcal Electronic energy + Delta-G solvation = -20552.740228 eV Core-core repulsion = 17469.909205 eV Total energy + Delta-G solvation = -3082.831023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30783 -38.66150 -37.16450 -35.35288 -32.69470 -32.29604 -28.61224 -27.39808 -26.61878 -26.40064 -25.04445 -22.91655 -22.68834 -20.55179 -19.02362 -18.22325 -17.43452 -16.44728 -16.34669 -15.87360 -15.51628 -14.79804 -14.54464 -14.18566 -13.63648 -13.38328 -13.21331 -13.03382 -12.56690 -12.49216 -12.28761 -12.14434 -12.05301 -11.78491 -11.45229 -11.25783 -11.23186 -10.96613 -10.83220 -10.59547 -10.43667 -10.40582 -10.26100 -10.25859 -10.15142 -9.87103 -9.72167 -9.20121 -8.93969 -8.36572 -6.00757 -4.01893 2.41927 2.94724 3.31441 3.38189 3.40742 3.45826 4.38872 4.41435 4.45708 4.62348 4.67813 4.91209 5.05176 5.13638 5.34531 5.34885 5.36669 5.46186 5.52020 5.52940 5.53790 5.62248 5.75344 5.78732 5.83717 5.85518 5.92899 6.05080 6.10346 6.20768 6.39302 6.52083 6.66163 6.71680 6.87108 7.11649 7.12542 7.14732 7.61207 7.73190 7.97311 8.01599 8.39979 9.02530 9.61152 11.10948 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.050937 B = 0.002999 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.568251 B = 9335.658398 C = 9562.089302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.352 6.352 15 C 0.453 3.547 16 O -0.517 6.517 17 C -0.114 4.114 18 C -0.070 4.070 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.176 4.176 22 C -0.175 4.175 23 H 0.039 0.961 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 4.898 22.049 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 O -0.268 6.268 15 C 0.296 3.704 16 O -0.406 6.406 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.128 4.128 20 C -0.182 4.182 21 C -0.213 4.213 22 C -0.212 4.212 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.212 4.484 21.876 22.561 hybrid contribution -0.073 0.190 -0.970 0.991 sum -3.285 4.673 20.906 21.673 Atomic orbital electron populations 1.21710 0.94855 1.00897 1.00811 1.20805 0.96130 0.96191 0.92761 1.21712 0.99993 0.95763 1.00807 1.19130 0.96372 0.95299 0.89481 1.21156 1.31172 1.12104 0.90300 0.92074 1.25022 0.95322 0.95084 0.99132 1.69969 1.36994 1.23081 1.23487 0.86611 0.79235 0.79381 0.82887 1.20730 1.21322 1.19866 1.23480 0.98861 0.95891 0.81195 1.86489 1.69371 1.55935 1.14991 1.23712 0.77679 0.82665 0.86306 1.90654 1.35835 1.25842 1.88251 1.21470 1.03504 1.01289 0.88851 1.20929 1.01177 0.98925 0.89748 1.21494 0.96059 1.03380 0.91906 1.21513 0.93748 1.00171 1.02737 1.23196 0.98276 0.96225 1.03576 1.23037 1.03802 0.97014 0.97378 0.94206 0.91586 0.93804 0.93809 0.91593 0.94200 0.96368 0.96354 0.93017 0.91721 0.91714 0.87765 0.87467 0.90582 0.90784 0.92077 0.92430 0.91148 0.88753 0.88853 0.88830 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 2 C -0.06 -1.20 0.61 -154.51 -0.09 -1.29 16 3 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.76 7.65 -34.44 -0.26 -14.02 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 7 C 0.06 1.55 5.46 -17.81 -0.10 1.46 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.08 1.48 4.32 37.15 0.16 1.64 16 14 O -0.35 -5.81 8.88 -39.26 -0.35 -6.16 16 15 C 0.45 6.77 7.96 36.00 0.29 7.05 16 16 O -0.52 -9.25 15.73 -18.76 -0.30 -9.55 16 17 C -0.11 -1.15 4.81 -27.89 -0.13 -1.28 16 18 C -0.07 -0.69 4.69 -26.73 -0.13 -0.81 16 19 C -0.13 -1.02 2.47 -154.51 -0.38 -1.40 16 20 C -0.12 -0.85 9.49 37.16 0.35 -0.50 16 21 C -0.18 -1.30 9.82 -26.71 -0.26 -1.56 16 22 C -0.18 -1.30 9.97 -26.71 -0.27 -1.56 16 23 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 24 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 28 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.91 6.45 -51.93 -0.33 0.58 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 40 H 0.07 0.46 5.59 -51.93 -0.29 0.17 16 41 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.09 0.60 8.05 -51.93 -0.42 0.19 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -30.42 352.19 -7.80 -38.22 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.84 Total: -2.55 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.34 Total: -15.71 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.64 Total: -15.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.42 -7.80 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344882890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.597 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds