Wall clock time and date at job start Mon Mar 30 2020 00:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.52999 * 109.46853 * 240.00160 * 2 1 3 5 5 C 1.50701 * 109.47172 * 60.00409 * 4 2 1 6 6 H 1.07995 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31523 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00217 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47171 * 89.99636 * 9 7 5 11 11 H 1.48492 * 109.47190 * 209.99867 * 9 7 5 12 12 H 1.48495 * 109.47067 * 330.00151 * 9 7 5 13 13 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 14 14 O 1.45202 * 109.46919 * 300.00395 * 13 2 1 15 15 C 1.34230 * 116.99836 * 180.02562 * 14 13 2 16 16 O 1.20833 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00262 * 180.27336 * 15 14 13 18 18 C 1.52996 * 109.47491 * 179.72204 * 17 15 14 19 19 C 1.53003 * 109.47301 * 179.97438 * 18 17 15 20 20 C 1.53003 * 115.54527 * 34.33100 * 19 18 17 21 21 C 1.52995 * 117.49946 * 248.62295 * 19 18 17 22 22 C 1.52999 * 117.50154 * 179.97438 * 19 18 17 23 23 H 1.08996 * 109.47459 * 300.00192 * 1 2 3 24 24 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 25 25 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47549 * 299.99975 * 3 2 1 28 28 H 1.09005 * 109.47490 * 60.00171 * 3 2 1 29 29 H 1.09006 * 109.46823 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47249 * 300.00051 * 4 2 1 31 31 H 0.96994 * 120.00123 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47242 * 179.97438 * 13 2 1 33 33 H 1.09004 * 109.46797 * 59.99640 * 13 2 1 34 34 H 1.09004 * 109.46801 * 299.72165 * 17 15 14 35 35 H 1.09000 * 109.47461 * 59.71633 * 17 15 14 36 36 H 1.09004 * 109.47066 * 299.99799 * 18 17 15 37 37 H 1.08994 * 109.47405 * 59.99969 * 18 17 15 38 38 H 1.09000 * 109.47323 * 85.58879 * 20 19 18 39 39 H 1.09004 * 109.46587 * 205.58458 * 20 19 18 40 40 H 1.08996 * 109.47317 * 325.57675 * 20 19 18 41 41 H 1.08996 * 117.49725 * 359.97438 * 21 19 18 42 42 H 1.08991 * 117.49863 * 145.02227 * 21 19 18 43 43 H 1.08999 * 117.49803 * 214.98622 * 22 19 18 44 44 H 1.09006 * 117.49560 * 359.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6281 -1.5503 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 2.2255 1.4413 -5.6613 11 1 1.0838 -0.5804 -6.3615 12 1 -0.0605 1.0354 -4.9614 13 6 2.0400 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9170 -0.5466 3.6228 16 8 2.6142 -1.5324 3.6705 17 6 1.4475 0.1065 4.8971 18 6 1.9905 -0.6700 6.0984 19 6 1.5142 -0.0065 7.3922 20 6 0.1187 0.6186 7.3382 21 6 2.5667 0.6876 8.2590 22 6 1.9540 -0.6391 8.7140 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6766 -1.7488 -1.2493 31 1 2.8630 -1.8812 -4.7337 32 1 3.1300 -0.7216 1.2489 33 1 1.6766 -1.7489 1.2491 34 1 1.8107 1.1336 4.9341 35 1 0.3579 0.1053 4.9260 36 1 1.6273 -1.6971 6.0613 37 1 3.0800 -0.6686 6.0696 38 1 -0.6295 -0.1439 7.5548 39 1 0.0492 1.4163 8.0778 40 1 -0.0575 1.0287 6.3439 41 1 3.5984 0.6711 7.9079 42 1 2.2651 1.5897 8.7911 43 1 1.2495 -0.6094 9.5452 44 1 2.5823 -1.5283 8.6619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344882890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:38 Heat of formation + Delta-G solvation = -112.255945 kcal Electronic energy + Delta-G solvation = -20553.366235 eV Core-core repulsion = 17469.909205 eV Total energy + Delta-G solvation = -3083.457030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57915 -39.41126 -38.63128 -36.87163 -34.41888 -33.49149 -29.42821 -29.07709 -28.08520 -27.95428 -26.18826 -24.77922 -23.26992 -21.74673 -19.92941 -19.66479 -18.64539 -18.32638 -17.68652 -17.18938 -16.52365 -16.15653 -15.83468 -15.31380 -14.97470 -14.80663 -14.52791 -14.07427 -13.95555 -13.76404 -13.61064 -13.21574 -13.01903 -12.95854 -12.74350 -12.66033 -12.40596 -12.32022 -12.23570 -12.11291 -11.96884 -11.95069 -11.82877 -11.53985 -11.35895 -11.04241 -10.97662 -10.88515 -10.53033 -10.46971 -8.16045 -6.24011 1.21793 1.42660 1.43317 1.53942 1.72284 2.44113 2.86383 3.18520 3.59428 3.70872 3.92157 3.93142 3.94895 4.02654 4.16404 4.22581 4.25429 4.42300 4.51260 4.59599 4.63125 4.74512 4.82335 4.88616 4.96448 5.02289 5.06386 5.09218 5.11479 5.13821 5.17273 5.24665 5.30910 5.42525 5.45531 5.45643 5.49382 5.53679 5.58480 5.74435 5.87056 6.27703 6.75751 6.90078 7.43735 8.96750 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.050937 B = 0.002999 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.568251 B = 9335.658398 C = 9562.089302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.055 4.055 3 C -0.119 4.119 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.089 3.911 14 O -0.347 6.347 15 C 0.451 3.549 16 O -0.551 6.551 17 C -0.103 4.103 18 C -0.068 4.068 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.174 4.174 22 C -0.178 4.178 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.068 0.932 29 H -0.012 1.012 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 7.116 23.333 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.176 4.176 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.183 1.183 13 C 0.015 3.985 14 O -0.263 6.263 15 C 0.296 3.704 16 O -0.442 6.442 17 C -0.140 4.140 18 C -0.105 4.105 19 C -0.132 4.132 20 C -0.181 4.181 21 C -0.211 4.211 22 C -0.215 4.215 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.842 6.721 23.184 24.619 hybrid contribution 0.473 -0.551 -1.277 1.469 sum -4.369 6.171 21.907 23.175 Atomic orbital electron populations 1.21640 0.93410 1.00842 1.01708 1.20625 0.97202 0.96569 0.91158 1.21644 0.99615 0.94641 1.01721 1.18996 0.94432 0.94324 0.92064 1.21541 1.30604 1.12164 0.90901 0.90932 1.25962 0.95601 0.95844 1.02748 1.70119 1.38691 1.24955 1.24222 0.85500 0.79216 0.78117 0.78565 1.20044 1.21409 1.18337 1.23076 0.98069 0.95322 0.82058 1.86480 1.69343 1.55596 1.14873 1.24758 0.76671 0.82205 0.86771 1.90651 1.37497 1.27597 1.88482 1.21636 1.04876 1.01758 0.85683 1.20871 1.00343 0.98514 0.90810 1.21466 0.96993 1.03781 0.90968 1.21538 0.92713 1.00451 1.03447 1.23257 0.97929 0.96650 1.03232 1.23105 1.03985 0.96959 0.97489 0.91269 0.92560 0.94401 0.94440 0.92513 0.91288 0.99341 0.99302 0.93064 0.92831 0.92788 0.85405 0.84991 0.91950 0.92157 0.91901 0.91449 0.90548 0.89207 0.87571 0.87704 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.08 71.98 0.58 -3.78 16 2 C -0.06 -2.24 0.61 -52.18 -0.03 -2.27 16 3 C -0.12 -4.37 8.08 71.98 0.58 -3.79 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.99 7.65 25.60 0.20 -27.80 16 6 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -57.29 13.29 21.45 0.28 -57.00 16 9 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 C 0.09 3.35 4.32 71.98 0.31 3.66 16 14 O -0.35 -10.88 8.88 -51.41 -0.46 -11.33 16 15 C 0.45 12.88 7.96 71.23 0.57 13.45 16 16 O -0.55 -19.83 15.73 21.94 0.35 -19.49 16 17 C -0.10 -1.81 4.81 29.85 0.14 -1.67 16 18 C -0.07 -1.23 4.69 30.59 0.14 -1.09 16 19 C -0.13 -1.82 2.47 -52.18 -0.13 -1.95 16 20 C -0.12 -1.32 9.49 71.98 0.68 -0.63 16 21 C -0.17 -2.21 9.82 30.61 0.30 -1.91 16 22 C -0.18 -2.35 9.97 30.61 0.31 -2.05 16 23 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 24 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 28 H 0.07 2.12 7.68 -2.38 -0.02 2.10 16 29 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 33 H 0.05 2.13 8.13 -2.38 -0.02 2.11 16 34 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.13 1.75 6.45 -2.39 -0.02 1.74 16 36 H 0.06 1.30 8.10 -2.38 -0.02 1.28 16 37 H 0.06 1.25 7.85 -2.39 -0.02 1.23 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.60 7.90 -2.38 -0.02 0.58 16 40 H 0.08 0.70 5.59 -2.39 -0.01 0.69 16 41 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 42 H 0.11 1.08 8.05 -2.39 -0.02 1.06 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -66.54 352.19 7.38 -59.16 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.95 Total: 10.32 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 4.23 Total: -27.48 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.11 Total: -30.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.54 7.38 -59.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344882890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.095 kcal (2) G-P(sol) polarization free energy of solvation -66.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds