Wall clock time and date at job start Mon Mar 30 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53006 * 109.47283 * 2 1 4 4 H 1.09005 * 109.46869 * 306.15328 * 3 2 1 5 5 C 1.52995 * 109.47132 * 66.15061 * 3 2 1 6 6 C 1.53005 * 109.46981 * 186.53622 * 5 3 2 7 7 C 1.52999 * 109.46779 * 66.16670 * 6 5 3 8 8 C 1.53000 * 109.47177 * 186.16400 * 6 5 3 9 9 C 1.50705 * 109.47310 * 186.15607 * 3 2 1 10 10 O 1.20822 * 120.00053 * 239.99891 * 9 3 2 11 11 O 1.34234 * 119.99767 * 59.99713 * 9 3 2 12 12 C 1.45201 * 116.99568 * 179.97438 * 11 9 3 13 13 H 1.09000 * 109.46900 * 30.00360 * 12 11 9 14 14 C 1.50695 * 109.46778 * 149.99901 * 12 11 9 15 15 H 1.08004 * 120.00330 * 95.12127 * 14 12 11 16 16 C 1.37883 * 119.99967 * 275.11990 * 14 12 11 17 17 N 1.31516 * 119.99581 * 185.36627 * 16 14 12 18 18 Si 1.86791 * 120.00176 * 5.37059 * 16 14 12 19 19 H 1.48502 * 109.47164 * 94.50160 * 18 16 14 20 20 H 1.48504 * 109.47020 * 214.50206 * 18 16 14 21 21 H 1.48497 * 109.47062 * 334.49891 * 18 16 14 22 22 C 1.52992 * 109.47341 * 269.99897 * 12 11 9 23 23 C 1.52995 * 117.49976 * 124.57439 * 22 12 11 24 24 C 1.53002 * 117.49670 * 55.91634 * 22 12 11 25 25 H 1.09008 * 109.47332 * 64.05212 * 1 2 3 26 26 H 1.09001 * 109.47572 * 184.05073 * 1 2 3 27 27 H 1.08999 * 109.47799 * 304.05491 * 1 2 3 28 28 H 1.09000 * 109.47640 * 239.99776 * 2 1 3 29 29 H 1.09000 * 109.47268 * 119.99604 * 2 1 3 30 30 H 1.08991 * 109.47503 * 306.54089 * 5 3 2 31 31 H 1.09008 * 109.47197 * 66.54370 * 5 3 2 32 32 H 1.08993 * 109.47145 * 306.16669 * 6 5 3 33 33 H 1.08998 * 109.47196 * 184.38218 * 7 6 5 34 34 H 1.08997 * 109.47419 * 304.38555 * 7 6 5 35 35 H 1.09001 * 109.47071 * 64.38344 * 7 6 5 36 36 H 1.09002 * 109.47027 * 60.00424 * 8 6 5 37 37 H 1.08996 * 109.47168 * 180.02562 * 8 6 5 38 38 H 1.09004 * 109.46976 * 300.00524 * 8 6 5 39 39 H 0.97006 * 119.99676 * 179.97438 * 17 16 14 40 40 H 1.08998 * 115.55104 * 270.24924 * 22 12 11 41 41 H 1.09002 * 117.50175 * 0.02562 * 23 22 12 42 42 H 1.09002 * 117.50152 * 145.02299 * 23 22 12 43 43 H 1.09001 * 117.50125 * 214.98080 * 24 22 12 44 44 H 1.08994 * 117.50052 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5894 1.9872 -0.8298 5 6 1.6601 2.1178 1.3193 6 6 2.0244 3.6025 1.2557 7 6 1.1517 4.2973 0.2086 8 6 1.7879 4.2447 2.6241 9 6 3.5393 1.4453 -0.1524 10 8 4.2329 1.9368 0.7062 11 8 4.1041 0.9015 -1.2419 12 6 5.5534 0.9403 -1.3220 13 1 5.9736 0.9128 -0.3166 14 6 6.0452 -0.2498 -2.1047 15 1 6.2435 -0.1562 -3.1622 16 6 6.2421 -1.4583 -1.4707 17 7 6.7705 -2.4673 -2.1282 18 14 5.7583 -1.6624 0.3219 19 1 4.3899 -2.2336 0.4033 20 1 6.7172 -2.5769 0.9924 21 1 5.7832 -0.3390 0.9950 22 6 5.9912 2.2279 -2.0228 23 6 6.9712 3.1383 -1.2802 24 6 5.5059 3.5535 -1.4327 25 1 -0.3634 0.4497 -0.9241 26 1 -0.3634 -1.0251 0.0726 27 1 -0.3635 0.5754 0.8514 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.5880 2.0135 1.4853 31 1 2.2023 1.6454 2.1385 32 1 3.0741 3.7076 0.9815 33 1 1.4636 5.3368 0.1075 34 1 1.2612 3.7903 -0.7501 35 1 0.1085 4.2598 0.5223 36 1 2.4097 3.7497 3.3701 37 1 2.0470 5.3024 2.5787 38 1 0.7382 4.1395 2.8983 39 1 6.9094 -3.3174 -1.6821 40 1 6.0860 2.1643 -3.1068 41 1 7.3045 2.8197 -0.2924 42 1 7.7107 3.6739 -1.8756 43 1 5.2817 4.3621 -2.1285 44 1 4.8743 3.5082 -0.5456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344937012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:46 Heat of formation + Delta-G solvation = -95.500226 kcal Electronic energy + Delta-G solvation = -22305.092817 eV Core-core repulsion = 19222.362369 eV Total energy + Delta-G solvation = -3082.730448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01194 -37.50308 -36.05564 -34.90593 -33.99042 -32.75493 -29.10466 -28.40664 -27.10237 -25.18801 -23.12337 -21.85476 -21.74849 -20.34153 -19.58744 -19.13081 -17.31467 -16.85606 -15.70898 -15.57548 -15.09697 -14.60805 -14.34820 -14.00660 -13.82935 -13.25338 -13.18576 -12.81604 -12.43062 -12.35584 -12.26911 -12.12383 -11.64858 -11.61514 -11.36813 -11.31382 -11.09480 -10.99505 -10.84179 -10.78228 -10.51192 -10.31524 -10.16661 -10.12668 -9.72554 -9.59128 -9.30383 -9.14863 -8.95159 -8.82945 -6.35587 -4.42317 3.05853 3.18521 3.26908 3.36514 3.66311 4.24245 4.57202 4.79210 4.91533 4.99446 5.11313 5.24196 5.28063 5.33247 5.47107 5.57468 5.58816 5.67375 5.68852 5.69141 5.76843 5.85137 5.86954 5.95870 6.01286 6.05860 6.12516 6.16094 6.19058 6.23097 6.30583 6.36230 6.48758 6.52102 6.54735 6.60941 6.67476 6.77950 7.04641 7.41615 7.73245 8.25888 8.72101 8.84642 9.25246 10.73807 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.007825 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.707495 B = 3577.322423 C = 4471.640969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.091 4.091 4 H 0.103 0.897 5 C -0.098 4.098 6 C -0.107 4.107 7 C -0.149 4.149 8 C -0.141 4.141 9 C 0.450 3.550 10 O -0.525 6.525 11 O -0.354 6.354 12 C 0.197 3.803 13 H 0.059 0.941 14 C -0.501 4.501 15 H 0.085 0.915 16 C 0.088 3.912 17 N -0.872 5.872 18 Si 0.862 3.138 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.249 1.249 22 C -0.135 4.135 23 C -0.173 4.173 24 C -0.200 4.200 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.271 0.729 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 9.527 5.689 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.121 0.879 5 C -0.136 4.136 6 C -0.125 4.125 7 C -0.206 4.206 8 C -0.198 4.198 9 C 0.294 3.706 10 O -0.417 6.417 11 O -0.270 6.270 12 C 0.146 3.854 13 H 0.077 0.923 14 C -0.537 4.537 15 H 0.103 0.897 16 C -0.119 4.119 17 N -0.508 5.508 18 Si 0.687 3.313 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.172 1.172 22 C -0.153 4.153 23 C -0.210 4.210 24 C -0.237 4.237 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.984 9.462 5.903 15.653 hybrid contribution -0.089 -0.248 0.834 0.874 sum -11.073 9.214 6.737 15.903 Atomic orbital electron populations 1.21813 0.95269 1.01698 1.01821 1.21515 0.96113 0.94526 1.03680 1.21256 0.90582 0.98660 1.00509 0.87939 1.21575 1.00842 0.95085 0.96053 1.21270 1.01719 0.94240 0.95263 1.21920 0.99389 1.00176 0.99127 1.21768 1.00901 1.00164 0.96983 1.23542 0.91359 0.74665 0.81062 1.90504 1.64843 1.43621 1.42701 1.87030 1.29570 1.69838 1.40603 1.20855 0.74130 0.92962 0.97459 0.92282 1.20965 1.41365 0.93319 0.98081 0.89710 1.25120 0.92831 0.95486 0.98476 1.69892 1.40665 1.02830 1.37423 0.87039 0.79271 0.79673 0.85276 1.19543 1.20828 1.17250 1.22650 1.02642 0.90711 0.99323 1.22823 0.92244 1.04022 1.01894 1.23140 0.97965 0.98865 1.03763 0.92523 0.92589 0.92537 0.89990 0.91877 0.91119 0.91265 0.89348 0.93031 0.92571 0.93052 0.92758 0.93096 0.93279 0.91936 0.88068 0.89203 0.89542 0.90131 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.78 37.15 0.36 -1.33 16 2 C -0.12 -1.82 5.36 -26.73 -0.14 -1.96 16 3 C -0.09 -1.42 2.18 -91.77 -0.20 -1.62 16 4 H 0.10 1.46 6.25 -51.93 -0.32 1.13 16 5 C -0.10 -1.34 3.69 -26.73 -0.10 -1.44 16 6 C -0.11 -1.42 2.71 -90.62 -0.25 -1.66 16 7 C -0.15 -1.70 9.07 37.16 0.34 -1.36 16 8 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 9 C 0.45 9.18 5.95 36.01 0.21 9.39 16 10 O -0.52 -11.50 11.29 -18.75 -0.21 -11.71 16 11 O -0.35 -8.25 9.23 -39.27 -0.36 -8.61 16 12 C 0.20 4.86 1.62 -27.89 -0.05 4.82 16 13 H 0.06 1.55 4.39 -51.93 -0.23 1.32 16 14 C -0.50 -14.02 9.24 -34.44 -0.32 -14.34 16 15 H 0.08 2.51 7.96 -52.48 -0.42 2.10 16 16 C 0.09 2.49 5.47 -17.82 -0.10 2.40 16 17 N -0.87 -25.69 13.96 55.43 0.77 -24.91 16 18 Si 0.86 21.60 27.48 -169.99 -4.67 16.93 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.25 -6.31 5.91 56.52 0.33 -5.98 16 22 C -0.13 -2.90 5.43 -90.62 -0.49 -3.39 16 23 C -0.17 -3.27 10.18 -26.70 -0.27 -3.54 16 24 C -0.20 -3.75 9.78 -26.69 -0.26 -4.01 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.57 6.31 -51.93 -0.33 0.24 16 28 H 0.08 1.38 7.97 -51.93 -0.41 0.97 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.80 6.26 -51.93 -0.32 0.48 16 31 H 0.07 1.05 7.90 -51.92 -0.41 0.64 16 32 H 0.09 1.43 5.90 -51.93 -0.31 1.13 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.66 6.29 -51.93 -0.33 0.33 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 2.16 8.01 -51.93 -0.42 1.74 16 41 H 0.09 1.75 8.03 -51.93 -0.42 1.34 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.10 1.99 5.14 -51.93 -0.27 1.72 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -29.69 341.87 -7.85 -37.54 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.61 Total: 4.95 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.92 Total: -19.33 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.77 Total: -24.91 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.57 Total: -20.33 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.69 -7.85 -37.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344937012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.958 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds