Wall clock time and date at job start Mon Mar 30 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53006 * 109.47283 * 2 1 4 4 H 1.09005 * 109.46869 * 306.15328 * 3 2 1 5 5 C 1.52995 * 109.47132 * 66.15061 * 3 2 1 6 6 C 1.53005 * 109.46981 * 186.53622 * 5 3 2 7 7 C 1.52999 * 109.46779 * 66.16670 * 6 5 3 8 8 C 1.53000 * 109.47177 * 186.16400 * 6 5 3 9 9 C 1.50705 * 109.47310 * 186.15607 * 3 2 1 10 10 O 1.20822 * 120.00053 * 239.99891 * 9 3 2 11 11 O 1.34234 * 119.99767 * 59.99713 * 9 3 2 12 12 C 1.45201 * 116.99568 * 179.97438 * 11 9 3 13 13 H 1.09000 * 109.46900 * 30.00360 * 12 11 9 14 14 C 1.50695 * 109.46778 * 149.99901 * 12 11 9 15 15 H 1.08004 * 120.00330 * 95.12127 * 14 12 11 16 16 C 1.37883 * 119.99967 * 275.11990 * 14 12 11 17 17 N 1.31516 * 119.99581 * 185.36627 * 16 14 12 18 18 Si 1.86791 * 120.00176 * 5.37059 * 16 14 12 19 19 H 1.48502 * 109.47164 * 94.50160 * 18 16 14 20 20 H 1.48504 * 109.47020 * 214.50206 * 18 16 14 21 21 H 1.48497 * 109.47062 * 334.49891 * 18 16 14 22 22 C 1.52992 * 109.47341 * 269.99897 * 12 11 9 23 23 C 1.52995 * 117.49976 * 124.57439 * 22 12 11 24 24 C 1.53002 * 117.49670 * 55.91634 * 22 12 11 25 25 H 1.09008 * 109.47332 * 64.05212 * 1 2 3 26 26 H 1.09001 * 109.47572 * 184.05073 * 1 2 3 27 27 H 1.08999 * 109.47799 * 304.05491 * 1 2 3 28 28 H 1.09000 * 109.47640 * 239.99776 * 2 1 3 29 29 H 1.09000 * 109.47268 * 119.99604 * 2 1 3 30 30 H 1.08991 * 109.47503 * 306.54089 * 5 3 2 31 31 H 1.09008 * 109.47197 * 66.54370 * 5 3 2 32 32 H 1.08993 * 109.47145 * 306.16669 * 6 5 3 33 33 H 1.08998 * 109.47196 * 184.38218 * 7 6 5 34 34 H 1.08997 * 109.47419 * 304.38555 * 7 6 5 35 35 H 1.09001 * 109.47071 * 64.38344 * 7 6 5 36 36 H 1.09002 * 109.47027 * 60.00424 * 8 6 5 37 37 H 1.08996 * 109.47168 * 180.02562 * 8 6 5 38 38 H 1.09004 * 109.46976 * 300.00524 * 8 6 5 39 39 H 0.97006 * 119.99676 * 179.97438 * 17 16 14 40 40 H 1.08998 * 115.55104 * 270.24924 * 22 12 11 41 41 H 1.09002 * 117.50175 * 0.02562 * 23 22 12 42 42 H 1.09002 * 117.50152 * 145.02299 * 23 22 12 43 43 H 1.09001 * 117.50125 * 214.98080 * 24 22 12 44 44 H 1.08994 * 117.50052 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5894 1.9872 -0.8298 5 6 1.6601 2.1178 1.3193 6 6 2.0244 3.6025 1.2557 7 6 1.1517 4.2973 0.2086 8 6 1.7879 4.2447 2.6241 9 6 3.5393 1.4453 -0.1524 10 8 4.2329 1.9368 0.7062 11 8 4.1041 0.9015 -1.2419 12 6 5.5534 0.9403 -1.3220 13 1 5.9736 0.9128 -0.3166 14 6 6.0452 -0.2498 -2.1047 15 1 6.2435 -0.1562 -3.1622 16 6 6.2421 -1.4583 -1.4707 17 7 6.7705 -2.4673 -2.1282 18 14 5.7583 -1.6624 0.3219 19 1 4.3899 -2.2336 0.4033 20 1 6.7172 -2.5769 0.9924 21 1 5.7832 -0.3390 0.9950 22 6 5.9912 2.2279 -2.0228 23 6 6.9712 3.1383 -1.2802 24 6 5.5059 3.5535 -1.4327 25 1 -0.3634 0.4497 -0.9241 26 1 -0.3634 -1.0251 0.0726 27 1 -0.3635 0.5754 0.8514 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.5880 2.0135 1.4853 31 1 2.2023 1.6454 2.1385 32 1 3.0741 3.7076 0.9815 33 1 1.4636 5.3368 0.1075 34 1 1.2612 3.7903 -0.7501 35 1 0.1085 4.2598 0.5223 36 1 2.4097 3.7497 3.3701 37 1 2.0470 5.3024 2.5787 38 1 0.7382 4.1395 2.8983 39 1 6.9094 -3.3174 -1.6821 40 1 6.0860 2.1643 -3.1068 41 1 7.3045 2.8197 -0.2924 42 1 7.7107 3.6739 -1.8756 43 1 5.2817 4.3621 -2.1285 44 1 4.8743 3.5082 -0.5456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344937012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:46 Heat of formation + Delta-G solvation = -110.241320 kcal Electronic energy + Delta-G solvation = -22305.732039 eV Core-core repulsion = 19222.362369 eV Total energy + Delta-G solvation = -3083.369670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64771 -38.95866 -37.49818 -36.61964 -35.12230 -34.86202 -30.77278 -29.81121 -27.97943 -26.43637 -25.01833 -23.28300 -23.18920 -21.54180 -21.16182 -20.64882 -19.29638 -18.57435 -17.51948 -17.09643 -16.48061 -16.05668 -15.65294 -15.57017 -15.09341 -14.92427 -14.52300 -14.21657 -14.02165 -13.51989 -13.43189 -13.37660 -13.13423 -12.98787 -12.94483 -12.84242 -12.46069 -12.33559 -12.11271 -12.08597 -11.91650 -11.81496 -11.55191 -11.41543 -11.26654 -11.21600 -11.07664 -10.97534 -10.80812 -10.71110 -8.55001 -6.65581 1.15717 1.19294 1.30998 1.44164 1.99435 2.13551 2.98087 3.00964 3.64595 3.78189 3.82981 3.94555 4.05762 4.14141 4.20008 4.23140 4.26460 4.33796 4.50982 4.59099 4.65314 4.70255 4.79902 4.80959 4.84077 4.87362 4.92274 4.96907 5.04357 5.09293 5.14961 5.17082 5.21592 5.23465 5.29286 5.35313 5.37836 5.45376 5.52227 5.62050 5.91576 6.17855 6.47088 7.04997 7.11844 8.58893 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.007825 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.707495 B = 3577.322423 C = 4471.640969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C -0.084 4.084 4 H 0.122 0.878 5 C -0.093 4.093 6 C -0.109 4.109 7 C -0.145 4.145 8 C -0.137 4.137 9 C 0.442 3.558 10 O -0.541 6.541 11 O -0.368 6.368 12 C 0.206 3.794 13 H 0.041 0.959 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.045 3.955 17 N -0.912 5.912 18 Si 0.915 3.085 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.178 4.178 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.276 0.724 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 11.274 6.899 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.140 0.860 5 C -0.130 4.130 6 C -0.127 4.127 7 C -0.202 4.202 8 C -0.195 4.195 9 C 0.288 3.712 10 O -0.432 6.432 11 O -0.285 6.285 12 C 0.154 3.846 13 H 0.059 0.941 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.158 4.158 17 N -0.550 5.550 18 Si 0.739 3.261 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.185 4.185 23 C -0.199 4.199 24 C -0.214 4.214 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.412 11.212 7.119 18.875 hybrid contribution 0.654 -0.715 0.439 1.064 sum -12.757 10.497 7.559 18.168 Atomic orbital electron populations 1.21777 0.91798 1.02872 1.03340 1.21546 0.99111 0.93519 1.01906 1.21410 0.86516 0.99731 1.02583 0.85991 1.21606 1.02554 0.94965 0.93881 1.21241 1.00143 0.94369 0.96966 1.21890 1.00214 1.00055 0.98071 1.21734 1.02012 1.00213 0.95502 1.24486 0.93419 0.73658 0.79674 1.90499 1.65803 1.44073 1.42872 1.86911 1.28386 1.71010 1.42223 1.20468 0.74686 0.93339 0.96058 0.94137 1.21101 1.42205 0.94772 0.97013 0.92785 1.25751 0.92887 0.95263 1.01940 1.69975 1.42403 1.03549 1.39083 0.86214 0.79639 0.79226 0.81067 1.18528 1.19495 1.18229 1.22525 1.06013 0.90778 0.99167 1.22941 0.93087 1.02611 1.01302 1.23152 0.97530 0.97478 1.03277 0.91305 0.91778 0.90571 0.92497 0.93047 0.87699 0.93126 0.92823 0.92576 0.93145 0.90811 0.93979 0.92432 0.91153 0.91451 0.88379 0.90233 0.86512 0.87063 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.78 71.98 0.70 -2.03 16 2 C -0.12 -3.53 5.36 30.59 0.16 -3.37 16 3 C -0.08 -2.48 2.18 -11.54 -0.03 -2.51 16 4 H 0.12 3.17 6.25 -2.38 -0.01 3.16 16 5 C -0.09 -2.31 3.69 30.59 0.11 -2.20 16 6 C -0.11 -2.64 2.71 -10.79 -0.03 -2.67 16 7 C -0.15 -2.82 9.07 71.98 0.65 -2.17 16 8 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 9 C 0.44 18.00 5.95 71.24 0.42 18.43 16 10 O -0.54 -23.80 11.29 21.98 0.25 -23.55 16 11 O -0.37 -17.46 9.23 -51.46 -0.47 -17.94 16 12 C 0.21 10.45 1.62 29.84 0.05 10.50 16 13 H 0.04 2.19 4.39 -2.39 -0.01 2.18 16 14 C -0.51 -30.00 9.24 25.60 0.24 -29.76 16 15 H 0.05 3.39 7.96 -2.91 -0.02 3.37 16 16 C 0.04 2.62 5.47 84.66 0.46 3.08 16 17 N -0.91 -55.45 13.96 21.45 0.30 -55.15 16 18 Si 0.91 45.71 27.48 68.60 1.89 47.59 16 19 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.26 -13.16 5.91 99.48 0.59 -12.57 16 22 C -0.17 -7.20 5.43 -10.80 -0.06 -7.26 16 23 C -0.16 -5.98 10.18 30.62 0.31 -5.66 16 24 C -0.18 -6.40 9.78 30.62 0.30 -6.10 16 25 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.19 6.31 -2.39 -0.02 1.17 16 28 H 0.06 1.90 7.97 -2.39 -0.02 1.89 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.91 6.26 -2.39 -0.01 1.90 16 31 H 0.05 1.46 7.90 -2.38 -0.02 1.44 16 32 H 0.05 1.69 5.90 -2.39 -0.01 1.68 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.03 6.29 -2.39 -0.02 1.01 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 40 H 0.10 4.26 8.01 -2.39 -0.02 4.24 16 41 H 0.08 3.08 8.03 -2.39 -0.02 3.07 16 42 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.09 3.47 5.14 -2.39 -0.01 3.46 16 Total: -1.00 -66.92 341.87 6.76 -60.16 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.84 Total: 22.76 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 3.96 Total: -33.86 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.30 Total: -55.15 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.23 Total: -41.49 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.89 Total: 47.59 kcal Total: -66.92 6.76 -60.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344937012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.082 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds