Wall clock time and date at job start Mon Mar 30 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 H 1.09000 * 109.47511 * 306.69633 * 3 2 1 5 5 C 1.52998 * 109.46864 * 186.69119 * 3 2 1 6 6 C 1.52997 * 109.47031 * 64.99764 * 5 3 2 7 7 C 1.53000 * 109.47122 * 184.31444 * 6 5 3 8 8 C 1.53004 * 109.47261 * 64.31415 * 6 5 3 9 9 C 1.50704 * 109.47046 * 66.69466 * 3 2 1 10 10 O 1.20826 * 119.99881 * 119.99447 * 9 3 2 11 11 O 1.34226 * 119.99943 * 299.99856 * 9 3 2 12 12 C 1.45194 * 117.00083 * 180.02562 * 11 9 3 13 13 H 1.09005 * 109.47280 * 29.99740 * 12 11 9 14 14 C 1.50701 * 109.47404 * 149.99884 * 12 11 9 15 15 H 1.08003 * 120.00043 * 0.02562 * 14 12 11 16 16 C 1.37878 * 120.00264 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99885 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00071 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47416 * 60.00248 * 18 16 14 20 20 H 1.48498 * 109.47241 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47265 * 300.00003 * 18 16 14 22 22 C 1.53005 * 109.47166 * 270.00017 * 12 11 9 23 23 C 1.53006 * 117.50017 * 128.74757 * 22 12 11 24 24 C 1.52994 * 117.49859 * 60.08478 * 22 12 11 25 25 H 1.08999 * 109.47163 * 300.00124 * 1 2 3 26 26 H 1.09006 * 109.47027 * 59.99751 * 1 2 3 27 27 H 1.08994 * 109.46920 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46945 * 240.00373 * 2 1 3 29 29 H 1.08996 * 109.47025 * 120.00150 * 2 1 3 30 30 H 1.09002 * 109.47516 * 304.99803 * 5 3 2 31 31 H 1.08999 * 109.46800 * 184.99347 * 5 3 2 32 32 H 1.09003 * 109.47104 * 304.31459 * 6 5 3 33 33 H 1.08997 * 109.47147 * 295.12387 * 7 6 5 34 34 H 1.08996 * 109.47254 * 55.12884 * 7 6 5 35 35 H 1.09005 * 109.46768 * 175.12483 * 7 6 5 36 36 H 1.09006 * 109.46852 * 180.02562 * 8 6 5 37 37 H 1.08995 * 109.46765 * 299.99776 * 8 6 5 38 38 H 1.08994 * 109.47208 * 60.00053 * 8 6 5 39 39 H 0.97004 * 120.00038 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54852 * 274.41302 * 22 12 11 41 41 H 1.08996 * 117.49595 * 359.97438 * 23 22 12 42 42 H 1.08995 * 117.49931 * 145.02187 * 23 22 12 43 43 H 1.08999 * 117.49919 * 214.98082 * 24 22 12 44 44 H 1.08995 * 117.49954 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5822 1.9898 -0.8240 5 6 3.5607 1.4458 -0.1681 6 6 3.9227 0.8884 -1.5462 7 6 5.4443 0.7911 -1.6734 8 6 3.3787 1.8193 -2.6318 9 6 1.6774 2.1035 1.3049 10 8 2.5462 2.5331 2.0264 11 8 0.3894 2.2149 1.6657 12 6 0.1141 2.8633 2.9353 13 1 0.8905 3.5997 3.1431 14 6 -1.2253 3.5508 2.8684 15 1 -1.8113 3.5046 1.9624 16 6 -1.7031 4.2378 3.9642 17 7 -0.9902 4.2928 5.0680 18 14 -3.3636 5.0893 3.8814 19 1 -4.4210 4.0858 3.5982 20 1 -3.6451 5.7525 5.1799 21 1 -3.3447 6.1071 2.8001 22 6 0.0942 1.8150 4.0496 23 6 0.9559 2.0813 5.2856 24 6 1.3713 1.0046 4.2799 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.0131 0.8249 0.6052 31 1 3.9338 2.4661 -0.0794 32 1 3.4841 -0.1025 -1.6640 33 1 5.8762 1.7913 -1.6422 34 1 5.8406 0.1983 -0.8490 35 1 5.7000 0.3142 -2.6196 36 1 3.6362 1.4219 -3.6136 37 1 2.2947 1.8886 -2.5412 38 1 3.8172 2.8102 -2.5140 39 1 -1.3262 4.7764 5.8388 40 1 -0.8583 1.3070 4.2002 41 1 1.5373 3.0031 5.3047 42 1 0.5705 1.7481 6.2491 43 1 1.2589 -0.0366 4.5824 44 1 2.2255 1.2178 3.6374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344937018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:54 Heat of formation + Delta-G solvation = -96.308871 kcal Electronic energy + Delta-G solvation = -21896.772295 eV Core-core repulsion = 18814.006782 eV Total energy + Delta-G solvation = -3082.765513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92749 -37.47397 -36.09279 -34.86846 -33.66348 -32.60065 -29.13040 -27.85484 -27.22776 -24.60799 -23.20901 -22.36075 -21.21603 -20.41020 -19.31397 -18.94420 -17.08253 -16.46120 -16.03453 -15.28115 -14.96262 -14.51196 -14.11666 -13.87458 -13.69771 -13.52752 -13.00426 -12.75700 -12.60538 -12.33074 -12.14044 -11.75492 -11.56513 -11.30912 -11.25444 -11.13628 -10.98125 -10.85521 -10.74197 -10.56655 -10.46765 -10.33721 -10.26638 -10.14486 -9.77979 -9.49912 -9.23717 -8.97858 -8.61324 -8.38947 -6.12357 -4.20193 3.08329 3.27972 3.31986 3.33509 3.68369 4.36267 4.77311 4.83775 4.90988 5.07352 5.12809 5.19244 5.26607 5.35144 5.53549 5.57478 5.66030 5.76882 5.79557 5.87171 5.91447 5.94016 5.98226 6.06317 6.07794 6.17728 6.21692 6.24511 6.32861 6.42018 6.45537 6.50216 6.58868 6.73212 6.91273 7.03666 7.20506 7.32220 7.45430 7.67027 7.90423 8.17120 8.70721 8.95158 9.44462 10.94251 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.005149 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.516376 B = 5436.586216 C = 5814.168770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.086 4.086 4 H 0.102 0.898 5 C -0.099 4.099 6 C -0.099 4.099 7 C -0.146 4.146 8 C -0.152 4.152 9 C 0.457 3.543 10 O -0.521 6.521 11 O -0.345 6.345 12 C 0.246 3.754 13 H 0.046 0.954 14 C -0.527 4.527 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.873 5.873 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.229 4.229 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -7.760 -10.898 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.148 4.148 3 C -0.105 4.105 4 H 0.120 0.880 5 C -0.136 4.136 6 C -0.117 4.117 7 C -0.203 4.203 8 C -0.209 4.209 9 C 0.301 3.699 10 O -0.412 6.412 11 O -0.261 6.261 12 C 0.193 3.807 13 H 0.064 0.936 14 C -0.565 4.565 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.509 5.509 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.131 4.131 23 C -0.162 4.162 24 C -0.266 4.266 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.206 -7.532 -10.441 14.754 hybrid contribution -0.883 0.533 0.321 1.079 sum 6.323 -7.000 -10.120 13.835 Atomic orbital electron populations 1.22021 0.94605 1.01360 1.04296 1.21492 0.97224 0.93854 1.02232 1.21198 0.97380 0.97567 0.94387 0.87990 1.21509 0.93086 1.02585 0.96457 1.21193 0.95955 0.99683 0.94854 1.21825 0.95419 1.01809 1.01297 1.21927 1.01372 0.99590 0.97994 1.23362 0.82479 0.76519 0.87577 1.90557 1.50344 1.46363 1.53930 1.86506 1.25637 1.71315 1.42669 1.20173 0.97485 0.88587 0.74408 0.93606 1.20874 1.02587 1.33034 1.00000 0.91428 1.24872 0.97827 0.95864 0.94936 1.70043 1.37315 1.40821 1.02734 0.86447 0.83396 0.79639 0.77279 1.20046 1.21159 1.20100 1.22579 0.92400 0.99361 0.98782 1.22357 1.02827 0.98107 0.92886 1.23275 1.01347 0.95613 1.06358 0.89254 0.92987 0.93322 0.91101 0.91798 0.91244 0.91000 0.90813 0.92694 0.92670 0.92933 0.92950 0.92238 0.92621 0.92641 0.89470 0.89417 0.90886 0.91180 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.60 37.16 0.36 -2.00 16 2 C -0.11 -1.46 5.28 -26.73 -0.14 -1.60 16 3 C -0.09 -1.28 2.16 -91.77 -0.20 -1.48 16 4 H 0.10 1.42 6.32 -51.93 -0.33 1.09 16 5 C -0.10 -1.30 3.51 -26.73 -0.09 -1.40 16 6 C -0.10 -1.01 2.79 -90.62 -0.25 -1.26 16 7 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 8 C -0.15 -1.47 8.94 37.16 0.33 -1.13 16 9 C 0.46 9.29 6.46 36.01 0.23 9.52 16 10 O -0.52 -11.92 12.96 -18.75 -0.24 -12.16 16 11 O -0.35 -7.89 7.07 -39.25 -0.28 -8.17 16 12 C 0.25 6.42 2.25 -27.88 -0.06 6.36 16 13 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 14 C -0.53 -14.53 8.88 -34.44 -0.31 -14.83 16 15 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 16 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.26 11.43 55.43 0.63 -23.62 16 18 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 C -0.11 -2.75 4.47 -90.62 -0.41 -3.15 16 23 C -0.12 -2.90 9.04 -26.69 -0.24 -3.14 16 24 C -0.23 -4.97 9.80 -26.69 -0.26 -5.23 16 25 H 0.09 1.58 5.52 -51.93 -0.29 1.29 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.75 6.20 -51.93 -0.32 0.43 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 32 H 0.07 0.71 6.25 -51.93 -0.32 0.38 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.59 6.44 -51.93 -0.33 0.25 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.09 2.20 8.11 -51.93 -0.42 1.78 16 41 H 0.09 2.19 8.05 -51.93 -0.42 1.78 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 2.11 5.37 -51.93 -0.28 1.83 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -28.76 342.79 -8.22 -36.98 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.68 Total: 4.47 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -0.79 Total: -18.57 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.63 Total: -23.62 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.52 Total: -20.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.76 -8.22 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344937018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.333 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds