Wall clock time and date at job start Mon Mar 30 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 H 1.09000 * 109.47511 * 306.69633 * 3 2 1 5 5 C 1.52998 * 109.46864 * 186.69119 * 3 2 1 6 6 C 1.52997 * 109.47031 * 64.99764 * 5 3 2 7 7 C 1.53000 * 109.47122 * 184.31444 * 6 5 3 8 8 C 1.53004 * 109.47261 * 64.31415 * 6 5 3 9 9 C 1.50704 * 109.47046 * 66.69466 * 3 2 1 10 10 O 1.20826 * 119.99881 * 119.99447 * 9 3 2 11 11 O 1.34226 * 119.99943 * 299.99856 * 9 3 2 12 12 C 1.45194 * 117.00083 * 180.02562 * 11 9 3 13 13 H 1.09005 * 109.47280 * 29.99740 * 12 11 9 14 14 C 1.50701 * 109.47404 * 149.99884 * 12 11 9 15 15 H 1.08003 * 120.00043 * 0.02562 * 14 12 11 16 16 C 1.37878 * 120.00264 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99885 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00071 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47416 * 60.00248 * 18 16 14 20 20 H 1.48498 * 109.47241 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47265 * 300.00003 * 18 16 14 22 22 C 1.53005 * 109.47166 * 270.00017 * 12 11 9 23 23 C 1.53006 * 117.50017 * 128.74757 * 22 12 11 24 24 C 1.52994 * 117.49859 * 60.08478 * 22 12 11 25 25 H 1.08999 * 109.47163 * 300.00124 * 1 2 3 26 26 H 1.09006 * 109.47027 * 59.99751 * 1 2 3 27 27 H 1.08994 * 109.46920 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46945 * 240.00373 * 2 1 3 29 29 H 1.08996 * 109.47025 * 120.00150 * 2 1 3 30 30 H 1.09002 * 109.47516 * 304.99803 * 5 3 2 31 31 H 1.08999 * 109.46800 * 184.99347 * 5 3 2 32 32 H 1.09003 * 109.47104 * 304.31459 * 6 5 3 33 33 H 1.08997 * 109.47147 * 295.12387 * 7 6 5 34 34 H 1.08996 * 109.47254 * 55.12884 * 7 6 5 35 35 H 1.09005 * 109.46768 * 175.12483 * 7 6 5 36 36 H 1.09006 * 109.46852 * 180.02562 * 8 6 5 37 37 H 1.08995 * 109.46765 * 299.99776 * 8 6 5 38 38 H 1.08994 * 109.47208 * 60.00053 * 8 6 5 39 39 H 0.97004 * 120.00038 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54852 * 274.41302 * 22 12 11 41 41 H 1.08996 * 117.49595 * 359.97438 * 23 22 12 42 42 H 1.08995 * 117.49931 * 145.02187 * 23 22 12 43 43 H 1.08999 * 117.49919 * 214.98082 * 24 22 12 44 44 H 1.08995 * 117.49954 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5822 1.9898 -0.8240 5 6 3.5607 1.4458 -0.1681 6 6 3.9227 0.8884 -1.5462 7 6 5.4443 0.7911 -1.6734 8 6 3.3787 1.8193 -2.6318 9 6 1.6774 2.1035 1.3049 10 8 2.5462 2.5331 2.0264 11 8 0.3894 2.2149 1.6657 12 6 0.1141 2.8633 2.9353 13 1 0.8905 3.5997 3.1431 14 6 -1.2253 3.5508 2.8684 15 1 -1.8113 3.5046 1.9624 16 6 -1.7031 4.2378 3.9642 17 7 -0.9902 4.2928 5.0680 18 14 -3.3636 5.0893 3.8814 19 1 -4.4210 4.0858 3.5982 20 1 -3.6451 5.7525 5.1799 21 1 -3.3447 6.1071 2.8001 22 6 0.0942 1.8150 4.0496 23 6 0.9559 2.0813 5.2856 24 6 1.3713 1.0046 4.2799 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.0131 0.8249 0.6052 31 1 3.9338 2.4661 -0.0794 32 1 3.4841 -0.1025 -1.6640 33 1 5.8762 1.7913 -1.6422 34 1 5.8406 0.1983 -0.8490 35 1 5.7000 0.3142 -2.6196 36 1 3.6362 1.4219 -3.6136 37 1 2.2947 1.8886 -2.5412 38 1 3.8172 2.8102 -2.5140 39 1 -1.3262 4.7764 5.8388 40 1 -0.8583 1.3070 4.2002 41 1 1.5373 3.0031 5.3047 42 1 0.5705 1.7481 6.2491 43 1 1.2589 -0.0366 4.5824 44 1 2.2255 1.2178 3.6374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344937018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:54 Heat of formation + Delta-G solvation = -109.354850 kcal Electronic energy + Delta-G solvation = -21897.338011 eV Core-core repulsion = 18814.006782 eV Total energy + Delta-G solvation = -3083.331229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57904 -38.84408 -37.69078 -36.67657 -34.81523 -34.58873 -30.28948 -29.82084 -27.96770 -26.04181 -24.92742 -23.67360 -23.07227 -21.82333 -21.01852 -20.21696 -18.86027 -18.30200 -17.67905 -16.88333 -16.40054 -16.03338 -15.78697 -15.20415 -14.89780 -14.62725 -14.48640 -14.23342 -13.87149 -13.67704 -13.36004 -13.13583 -13.00490 -12.93053 -12.78918 -12.54836 -12.32373 -12.26248 -12.20810 -11.99940 -11.75860 -11.72054 -11.58122 -11.41929 -11.30703 -11.26293 -10.99266 -10.85751 -10.58023 -10.40305 -8.20311 -6.37121 1.41879 1.44057 1.45397 1.52361 2.06573 2.44596 3.06929 3.22926 3.70528 3.84819 3.87237 4.10451 4.14622 4.19989 4.29060 4.31631 4.40857 4.45346 4.55515 4.71916 4.75289 4.78934 4.81384 4.86661 4.91990 5.02654 5.09539 5.10861 5.15022 5.18372 5.18439 5.27174 5.32879 5.36377 5.39631 5.49311 5.52532 5.57134 5.58920 5.71004 5.89689 6.21649 6.66871 7.09081 7.33602 8.85640 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.005149 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.516376 B = 5436.586216 C = 5814.168770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.077 4.077 4 H 0.116 0.884 5 C -0.094 4.094 6 C -0.091 4.091 7 C -0.146 4.146 8 C -0.153 4.153 9 C 0.448 3.552 10 O -0.552 6.552 11 O -0.348 6.348 12 C 0.251 3.749 13 H 0.001 0.999 14 C -0.554 4.554 15 H 0.063 0.937 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.272 1.272 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.198 4.198 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.266 0.734 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -9.326 -12.518 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.141 4.141 3 C -0.096 4.096 4 H 0.134 0.866 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.203 4.203 8 C -0.210 4.210 9 C 0.293 3.707 10 O -0.444 6.444 11 O -0.264 6.264 12 C 0.198 3.802 13 H 0.019 0.981 14 C -0.592 4.592 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.532 5.532 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.197 1.197 22 C -0.146 4.146 23 C -0.163 4.163 24 C -0.235 4.235 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.926 -9.110 -12.077 16.638 hybrid contribution -0.726 1.035 0.800 1.496 sum 6.200 -8.076 -11.277 15.193 Atomic orbital electron populations 1.21983 0.95281 1.02152 1.02773 1.21523 0.96500 0.92400 1.03716 1.21381 0.98720 0.98433 0.91098 0.86618 1.21501 0.91527 1.01591 0.98518 1.21174 0.96854 1.00249 0.92665 1.21826 0.94507 1.01725 1.02271 1.21946 1.01124 0.99212 0.98735 1.24591 0.81166 0.75831 0.89080 1.90538 1.50782 1.47704 1.55414 1.86549 1.27439 1.71092 1.41295 1.19783 0.95509 0.88496 0.76396 0.98078 1.21153 1.03356 1.34331 1.00321 0.91848 1.25702 1.01396 0.96158 0.94391 1.70164 1.38780 1.41051 1.03182 0.85407 0.78921 0.78604 0.77472 1.19130 1.20463 1.19668 1.22378 0.93085 1.00140 0.98976 1.22273 1.02567 0.97917 0.93521 1.23245 0.99145 0.96685 1.04418 0.93177 0.91999 0.91397 0.87287 0.92490 0.92065 0.92965 0.89180 0.93282 0.92762 0.91097 0.91065 0.92434 0.93413 0.92496 0.90324 0.91938 0.89361 0.87956 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 9.60 71.98 0.69 -3.71 16 2 C -0.10 -2.51 5.28 30.60 0.16 -2.35 16 3 C -0.08 -2.24 2.16 -11.54 -0.02 -2.26 16 4 H 0.12 3.06 6.32 -2.39 -0.02 3.04 16 5 C -0.09 -2.39 3.51 30.59 0.11 -2.28 16 6 C -0.09 -1.62 2.79 -10.79 -0.03 -1.65 16 7 C -0.15 -2.34 9.19 71.98 0.66 -1.68 16 8 C -0.15 -2.57 8.94 71.98 0.64 -1.93 16 9 C 0.45 18.67 6.46 71.24 0.46 19.13 16 10 O -0.55 -26.35 12.96 21.97 0.28 -26.07 16 11 O -0.35 -16.45 7.07 -51.38 -0.36 -16.82 16 12 C 0.25 13.71 2.25 29.85 0.07 13.78 16 13 H 0.00 0.09 6.91 -2.38 -0.02 0.08 16 14 C -0.55 -31.50 8.88 25.60 0.23 -31.27 16 15 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 16 C 0.03 1.40 5.30 84.65 0.45 1.85 16 17 N -0.90 -50.88 11.43 21.45 0.25 -50.63 16 18 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.13 -6.37 4.47 -10.79 -0.05 -6.42 16 23 C -0.13 -5.97 9.04 30.62 0.28 -5.70 16 24 C -0.20 -8.58 9.80 30.62 0.30 -8.28 16 25 H 0.05 1.76 5.52 -2.39 -0.01 1.75 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.11 1.85 6.20 -2.39 -0.01 1.84 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.53 7.96 -2.39 -0.02 1.51 16 32 H 0.09 1.35 6.25 -2.39 -0.01 1.33 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.06 0.99 6.44 -2.39 -0.02 0.97 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.08 4.05 8.11 -2.39 -0.02 4.03 16 41 H 0.06 3.27 8.05 -2.39 -0.02 3.25 16 42 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 43 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 44 H 0.08 3.86 5.37 -2.39 -0.01 3.85 16 Total: -1.00 -64.59 342.79 7.09 -57.50 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.95 Total: 23.60 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 3.94 Total: -32.77 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.25 Total: -50.63 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.08 Total: -42.88 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.59 7.09 -57.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344937018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.856 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds