Wall clock time and date at job start Mon Mar 30 2020 00:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47352 * 2 1 4 4 C 1.52998 * 109.47190 * 175.72928 * 3 2 1 5 5 H 1.08999 * 109.46897 * 54.04736 * 4 3 2 6 6 C 1.50699 * 109.47091 * 174.04952 * 4 3 2 7 7 O 1.20829 * 119.99841 * 359.97438 * 6 4 3 8 8 O 1.34228 * 120.00319 * 180.02562 * 6 4 3 9 9 C 1.45197 * 117.00364 * 179.97438 * 8 6 4 10 10 H 1.08995 * 109.47041 * 29.99924 * 9 8 6 11 11 C 1.50701 * 109.47272 * 149.99740 * 9 8 6 12 12 H 1.07997 * 119.99749 * 359.72282 * 11 9 8 13 13 C 1.37872 * 119.99912 * 179.97438 * 11 9 8 14 14 N 1.31507 * 120.00275 * 359.72815 * 13 11 9 15 15 Si 1.86804 * 119.99844 * 179.72570 * 13 11 9 16 16 H 1.48497 * 109.47078 * 90.00068 * 15 13 11 17 17 H 1.48500 * 109.46915 * 210.00172 * 15 13 11 18 18 H 1.48503 * 109.46849 * 329.99885 * 15 13 11 19 19 C 1.53000 * 109.47258 * 270.00009 * 9 8 6 20 20 C 1.52992 * 117.50085 * 128.74347 * 19 9 8 21 21 C 1.52996 * 117.50054 * 60.08163 * 19 9 8 22 22 C 1.52997 * 109.47191 * 294.04986 * 4 3 2 23 23 C 1.53003 * 109.47259 * 174.11446 * 22 4 3 24 24 C 1.53002 * 109.47020 * 294.11067 * 22 4 3 25 25 H 1.09000 * 109.46810 * 300.00157 * 1 2 3 26 26 H 1.08997 * 109.47026 * 59.99981 * 1 2 3 27 27 H 1.08995 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47248 * 239.99537 * 2 1 3 29 29 H 1.08997 * 109.47026 * 120.00019 * 2 1 3 30 30 H 1.08995 * 109.46822 * 55.72620 * 3 2 1 31 31 H 1.09004 * 109.47047 * 295.73164 * 3 2 1 32 32 H 0.97005 * 120.00091 * 180.02562 * 14 13 11 33 33 H 1.09004 * 115.54926 * 274.41790 * 19 9 8 34 34 H 1.08996 * 117.49785 * 0.02562 * 20 19 9 35 35 H 1.09002 * 117.49951 * 145.01931 * 20 19 9 36 36 H 1.09003 * 117.50174 * 214.98431 * 21 19 9 37 37 H 1.09002 * 117.49904 * 359.97438 * 21 19 9 38 38 H 1.09000 * 109.47274 * 54.11001 * 22 4 3 39 39 H 1.08997 * 109.46837 * 306.37999 * 23 22 4 40 40 H 1.08995 * 109.47290 * 66.37981 * 23 22 4 41 41 H 1.08996 * 109.47290 * 186.38452 * 23 22 4 42 42 H 1.09000 * 109.47086 * 60.00281 * 24 22 4 43 43 H 1.09001 * 109.47465 * 180.02562 * 24 22 4 44 44 H 1.09000 * 109.47043 * 300.00076 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5663 1.4438 0.1074 5 1 3.9865 0.8202 -0.6817 6 6 4.0790 2.8533 -0.0393 7 8 3.3032 3.7633 -0.2125 8 8 5.3974 3.0976 0.0214 9 6 5.8195 4.4788 -0.1285 10 1 5.0402 5.1400 0.2502 11 6 7.0904 4.7030 0.6497 12 1 7.5339 3.8900 1.2053 13 6 7.6842 5.9473 0.6564 14 7 7.1444 6.9371 -0.0206 15 14 9.2554 6.2272 1.6272 16 1 10.4288 5.9462 0.7616 17 1 9.3073 7.6376 2.0890 18 1 9.2790 5.3202 2.8029 19 6 6.0679 4.7784 -1.6082 20 6 5.3856 6.0116 -2.2035 21 6 4.8902 4.6105 -2.5704 22 6 3.9820 0.8892 1.4714 23 6 5.5051 0.7530 1.5239 24 6 3.5171 1.8437 2.5732 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6156 1.9779 0.8492 31 1 1.7405 1.9338 -0.9258 32 1 7.5624 7.8125 -0.0161 33 1 7.0609 4.5243 -1.9791 34 1 4.7602 6.6098 -1.5409 35 1 5.9296 6.5688 -2.9662 36 1 5.1085 4.2464 -3.5743 37 1 3.9386 4.2862 -2.1493 38 1 3.5244 -0.0887 1.6209 39 1 5.8468 0.1652 0.6720 40 1 5.9598 1.7429 1.4882 41 1 5.7935 0.2538 2.4489 42 1 2.4321 1.9407 2.5358 43 1 3.8137 1.4489 3.5449 44 1 3.9748 2.8216 2.4237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345533741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:42 Heat of formation + Delta-G solvation = -108.969280 kcal Electronic energy + Delta-G solvation = -22117.136774 eV Core-core repulsion = 19033.822264 eV Total energy + Delta-G solvation = -3083.314510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65297 -38.85971 -37.53313 -36.68568 -34.72128 -34.55290 -30.56406 -29.74902 -28.08781 -26.08182 -24.96706 -23.11287 -22.91810 -22.34452 -21.17383 -20.12633 -18.73005 -18.20476 -17.45549 -16.96633 -16.53412 -16.23804 -15.69872 -15.37203 -14.86086 -14.65729 -14.48859 -14.23509 -13.85683 -13.51827 -13.40018 -13.00894 -12.97836 -12.86582 -12.78479 -12.73547 -12.36881 -12.25875 -12.17810 -11.96460 -11.81746 -11.75900 -11.68128 -11.44083 -11.29617 -11.18098 -11.01807 -10.85210 -10.54444 -10.40890 -8.20070 -6.36253 1.41525 1.42532 1.49036 1.53342 2.08730 2.44695 3.07190 3.22726 3.70216 3.78657 3.88873 4.09586 4.16492 4.19450 4.30416 4.34300 4.38306 4.45111 4.59373 4.64518 4.68144 4.78473 4.81082 4.86187 4.91163 5.01978 5.07706 5.09797 5.10715 5.13044 5.23904 5.27887 5.28482 5.38751 5.40405 5.43365 5.50102 5.56998 5.58278 5.72749 5.91037 6.23560 6.68274 7.12127 7.34684 8.86147 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.005855 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.486449 B = 4780.813449 C = 5596.911074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.075 4.075 5 H 0.119 0.881 6 C 0.454 3.546 7 O -0.553 6.553 8 O -0.349 6.349 9 C 0.254 3.746 10 H 0.001 0.999 11 C -0.549 4.549 12 H 0.063 0.937 13 C 0.025 3.975 14 N -0.896 5.896 15 Si 0.970 3.030 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.200 4.200 22 C -0.076 4.076 23 C -0.158 4.158 24 C -0.153 4.153 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -14.370 0.510 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.094 4.094 5 H 0.137 0.863 6 C 0.300 3.700 7 O -0.446 6.446 8 O -0.265 6.265 9 C 0.200 3.800 10 H 0.018 0.982 11 C -0.586 4.586 12 H 0.081 0.919 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.794 3.206 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.237 4.237 22 C -0.094 4.094 23 C -0.215 4.215 24 C -0.210 4.210 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.946 -13.869 0.413 15.990 hybrid contribution 0.841 1.253 0.276 1.534 sum -7.106 -12.616 0.689 14.496 Atomic orbital electron populations 1.21764 0.95244 1.02298 1.01629 1.21574 0.96333 0.94178 1.03412 1.21515 0.91123 0.98923 1.02306 1.21417 0.97720 0.88503 1.01781 0.86317 1.24430 0.81231 0.93289 0.71096 1.90537 1.58242 1.48545 1.47230 1.86552 1.24887 1.34074 1.80944 1.19746 0.93847 0.74874 0.91511 0.98167 1.21154 1.08945 0.96965 1.31551 0.91866 1.25690 1.00778 0.95012 0.96214 1.70168 1.40343 1.01987 1.40767 0.85376 0.78925 0.77381 0.78869 1.19544 1.20596 1.19236 1.22422 0.94927 1.03163 0.94380 1.22258 1.02450 0.89944 1.01493 1.23264 0.98870 1.01404 1.00158 1.21141 0.96914 1.00334 0.91060 1.22027 0.94819 1.02370 1.02294 1.21961 1.01334 0.98056 0.99667 0.92977 0.93301 0.91185 0.90879 0.90066 0.92056 0.92768 0.92556 0.90318 0.91933 0.89368 0.87907 0.89684 0.86221 0.91736 0.93633 0.91333 0.91607 0.90551 0.96607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.00 5.80 30.59 0.18 -1.83 16 3 C -0.10 -2.54 3.93 30.59 0.12 -2.42 16 4 C -0.08 -2.16 2.09 -11.54 -0.02 -2.18 16 5 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 6 C 0.45 18.80 4.92 71.24 0.35 19.15 16 7 O -0.55 -26.30 12.94 21.95 0.28 -26.02 16 8 O -0.35 -16.47 7.15 -51.40 -0.37 -16.84 16 9 C 0.25 13.82 2.25 29.85 0.07 13.89 16 10 H 0.00 0.04 6.91 -2.39 -0.02 0.02 16 11 C -0.55 -31.11 8.88 25.60 0.23 -30.88 16 12 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 13 C 0.02 1.37 5.31 84.65 0.45 1.82 16 14 N -0.90 -51.00 11.41 21.44 0.24 -50.76 16 15 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C -0.13 -6.57 4.47 -10.80 -0.05 -6.62 16 20 C -0.12 -5.94 9.04 30.61 0.28 -5.66 16 21 C -0.20 -8.73 9.80 30.62 0.30 -8.43 16 22 C -0.08 -1.90 2.58 -10.79 -0.03 -1.93 16 23 C -0.16 -4.38 8.65 71.98 0.62 -3.76 16 24 C -0.15 -4.30 8.64 71.98 0.62 -3.68 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.15 6.30 -2.39 -0.02 1.14 16 30 H 0.06 1.67 6.34 -2.39 -0.02 1.66 16 31 H 0.05 1.53 7.92 -2.38 -0.02 1.51 16 32 H 0.27 14.29 8.31 -92.70 -0.77 13.51 16 33 H 0.08 4.08 8.11 -2.38 -0.02 4.06 16 34 H 0.06 3.29 8.05 -2.39 -0.02 3.27 16 35 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.08 3.89 5.37 -2.39 -0.01 3.88 16 38 H 0.12 2.09 6.27 -2.39 -0.01 2.07 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.68 5.88 -2.39 -0.01 1.66 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.69 6.47 -2.39 -0.02 1.67 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.01 0.56 7.05 -2.39 -0.02 0.54 16 Total: -1.00 -65.21 340.85 6.97 -58.24 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.95 Total: 24.28 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.83 Total: -34.20 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.24 Total: -50.76 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.08 Total: -42.85 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.21 6.97 -58.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345533741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.733 kcal (2) G-P(sol) polarization free energy of solvation -65.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds