Wall clock time and date at job start Mon Mar 30 2020 00:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 C 1.52995 * 109.47000 * 174.85079 * 3 2 1 5 5 H 1.09001 * 109.47646 * 304.01131 * 4 3 2 6 6 C 1.50698 * 109.47403 * 184.00923 * 4 3 2 7 7 O 1.20827 * 119.99410 * 0.02562 * 6 4 3 8 8 O 1.34225 * 120.00591 * 179.97438 * 6 4 3 9 9 C 1.45198 * 117.00201 * 180.02562 * 8 6 4 10 10 H 1.09001 * 109.47236 * 329.99957 * 9 8 6 11 11 C 1.50703 * 109.47046 * 210.00035 * 9 8 6 12 12 H 1.07997 * 120.00178 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00114 * 179.97438 * 11 9 8 14 14 N 1.31520 * 120.00020 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00424 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46763 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47332 * 119.99863 * 15 13 11 18 18 H 1.48500 * 109.47250 * 240.00386 * 15 13 11 19 19 C 1.52996 * 109.47124 * 90.00346 * 9 8 6 20 20 C 1.52999 * 117.49960 * 231.25204 * 19 9 8 21 21 C 1.53004 * 117.49699 * 299.91167 * 19 9 8 22 22 C 1.52999 * 109.47040 * 64.01015 * 4 3 2 23 23 C 1.52999 * 109.47156 * 65.31739 * 22 4 3 24 24 C 1.53001 * 109.47150 * 185.31514 * 22 4 3 25 25 H 1.09001 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46795 * 300.00098 * 1 2 3 27 27 H 1.08999 * 109.46789 * 60.00148 * 1 2 3 28 28 H 1.09001 * 109.47517 * 240.00093 * 2 1 3 29 29 H 1.08999 * 109.46789 * 119.99852 * 2 1 3 30 30 H 1.08996 * 109.46884 * 54.85497 * 3 2 1 31 31 H 1.08999 * 109.46798 * 294.85178 * 3 2 1 32 32 H 0.96993 * 120.00291 * 180.02562 * 14 13 11 33 33 H 1.09001 * 115.55407 * 85.58451 * 19 9 8 34 34 H 1.08999 * 117.50114 * 215.00010 * 20 19 9 35 35 H 1.09002 * 117.49578 * 0.02562 * 20 19 9 36 36 H 1.08992 * 117.49895 * 359.97438 * 21 19 9 37 37 H 1.09001 * 117.49762 * 145.00066 * 21 19 9 38 38 H 1.08997 * 109.47498 * 305.31787 * 22 4 3 39 39 H 1.09002 * 109.47284 * 60.00273 * 23 22 4 40 40 H 1.08997 * 109.47410 * 180.02562 * 23 22 4 41 41 H 1.08997 * 109.47266 * 300.00199 * 23 22 4 42 42 H 1.09000 * 109.46949 * 52.91020 * 24 22 4 43 43 H 1.09009 * 109.47057 * 172.91001 * 24 22 4 44 44 H 1.09000 * 109.47556 * 292.90387 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5645 1.4445 0.1295 5 1 3.8538 0.8959 1.0258 6 6 4.0585 2.8648 0.2285 7 8 3.2718 3.7814 0.1991 8 8 5.3722 3.1116 0.3505 9 6 5.7759 4.5033 0.4412 10 1 5.0689 5.1234 -0.1100 11 6 7.1532 4.6664 -0.1484 12 1 7.6729 3.8098 -0.5514 13 6 7.7493 5.9093 -0.1742 14 7 7.1162 6.9526 0.3161 15 14 9.4562 6.1117 -0.9057 16 1 9.9479 4.7953 -1.3864 17 1 9.3972 7.0632 -2.0442 18 1 10.3801 6.6371 0.1314 19 6 5.7954 4.9340 1.9092 20 6 5.0383 6.2105 2.2811 21 6 4.4822 4.8439 2.6893 22 6 4.1816 0.7745 -1.0999 23 6 3.8866 1.6176 -2.3421 24 6 5.6953 0.6572 -0.9108 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6034 1.9822 0.8403 31 1 1.7539 1.9290 -0.9325 32 1 7.5353 7.8271 0.2976 33 1 6.7175 4.7203 2.4497 34 1 5.4623 6.8365 3.0662 35 1 4.5260 6.7432 1.4799 36 1 3.6045 4.4783 2.1566 37 1 4.5405 4.5710 3.7430 38 1 3.7529 -0.2197 -1.2254 39 1 4.3154 2.6119 -2.2167 40 1 4.3258 1.1401 -3.2180 41 1 2.8083 1.7012 -2.4768 42 1 5.9058 0.1658 0.0391 43 1 6.1188 0.0696 -1.7255 44 1 6.1399 1.6524 -0.9116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345533742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:45 Heat of formation + Delta-G solvation = -96.232979 kcal Electronic energy + Delta-G solvation = -22115.785214 eV Core-core repulsion = 19033.022992 eV Total energy + Delta-G solvation = -3082.762222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03529 -37.34821 -35.92215 -34.89952 -33.61706 -32.61063 -29.36274 -27.86605 -26.88888 -24.76028 -23.14343 -21.78576 -21.25555 -21.00869 -19.33228 -18.66463 -16.91322 -16.43192 -15.92029 -15.31415 -15.14753 -14.64735 -14.11843 -13.87995 -13.62565 -13.46100 -13.05756 -12.73810 -12.47189 -12.04036 -11.87259 -11.82597 -11.47815 -11.36422 -11.22793 -11.07033 -11.01587 -10.87336 -10.83771 -10.54075 -10.38949 -10.32264 -10.24245 -10.10159 -9.77784 -9.46436 -9.26047 -8.96901 -8.58770 -8.39973 -6.12809 -4.20310 3.10515 3.24810 3.32309 3.36072 3.69993 4.36071 4.80442 4.89920 5.00275 5.10464 5.14553 5.19354 5.22421 5.34962 5.55608 5.66538 5.72210 5.82179 5.84032 5.91481 5.96114 5.97756 6.03011 6.08959 6.18904 6.21720 6.28791 6.29574 6.36799 6.41916 6.44209 6.58593 6.61204 6.75065 6.94280 7.03704 7.19964 7.32413 7.45901 7.67732 7.90555 8.17328 8.71782 8.96383 9.44487 10.93961 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.005860 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.841322 B = 4777.366564 C = 5601.509701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.081 4.081 5 H 0.098 0.902 6 C 0.461 3.539 7 O -0.522 6.522 8 O -0.346 6.346 9 C 0.246 3.754 10 H 0.046 0.954 11 C -0.524 4.524 12 H 0.069 0.931 13 C 0.069 3.931 14 N -0.873 5.873 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.230 4.230 22 C -0.083 4.083 23 C -0.154 4.154 24 C -0.159 4.159 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -11.981 -0.592 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.143 4.143 4 C -0.101 4.101 5 H 0.116 0.884 6 C 0.305 3.695 7 O -0.413 6.413 8 O -0.261 6.261 9 C 0.194 3.806 10 H 0.064 0.936 11 C -0.562 4.562 12 H 0.087 0.913 13 C -0.135 4.135 14 N -0.509 5.509 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.132 4.132 20 C -0.161 4.161 21 C -0.267 4.267 22 C -0.101 4.101 23 C -0.211 4.211 24 C -0.216 4.216 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.870 -11.463 -0.566 13.916 hybrid contribution 0.941 0.482 -0.154 1.069 sum -6.929 -10.980 -0.721 13.004 Atomic orbital electron populations 1.21763 0.95938 1.01233 1.01954 1.21583 0.95747 0.96751 1.02064 1.21520 0.92560 0.96593 1.03662 1.21213 0.96286 0.91697 1.00866 0.88355 1.23251 0.82476 0.91454 0.72362 1.90558 1.56916 1.46976 1.46808 1.86528 1.23383 1.35364 1.80867 1.20170 0.96039 0.73385 0.91051 0.93613 1.20940 1.00036 0.94736 1.40478 0.91320 1.24874 0.98164 0.95401 0.95103 1.70060 1.37389 0.99475 1.43989 0.86355 0.83509 0.78303 0.78770 1.19534 1.20887 1.20871 1.22595 0.92598 1.01202 0.96830 1.22355 1.02664 0.89622 1.01501 1.23282 0.99976 1.04207 0.99232 1.21065 0.96930 0.98767 0.93342 1.21960 1.01350 1.00675 0.97152 1.22063 0.94336 1.04494 1.00696 0.92983 0.92733 0.92750 0.91708 0.92022 0.91174 0.90889 0.92767 0.89473 0.90891 0.89405 0.88808 0.91170 0.90440 0.92048 0.92524 0.92600 0.92859 0.93324 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.26 5.54 -26.73 -0.15 -1.41 16 3 C -0.11 -1.40 3.87 -26.73 -0.10 -1.50 16 4 C -0.08 -1.22 2.11 -91.78 -0.19 -1.41 16 5 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 6 C 0.46 9.28 4.94 36.00 0.18 9.46 16 7 O -0.52 -11.83 12.98 -18.75 -0.24 -12.07 16 8 O -0.35 -7.84 7.13 -39.25 -0.28 -8.12 16 9 C 0.25 6.38 2.25 -27.88 -0.06 6.32 16 10 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 11 C -0.52 -14.30 8.88 -34.44 -0.31 -14.61 16 12 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 13 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 14 N -0.87 -24.19 11.43 55.43 0.63 -23.55 16 15 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.11 -2.79 4.47 -90.62 -0.41 -3.19 16 20 C -0.12 -2.90 9.04 -26.69 -0.24 -3.14 16 21 C -0.23 -5.02 9.80 -26.69 -0.26 -5.28 16 22 C -0.08 -1.12 2.55 -90.62 -0.23 -1.35 16 23 C -0.15 -2.21 8.63 37.16 0.32 -1.89 16 24 C -0.16 -2.33 8.61 37.16 0.32 -2.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 6.68 -51.93 -0.35 0.26 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16 31 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.09 2.21 8.11 -51.93 -0.42 1.79 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 2.20 8.05 -51.93 -0.42 1.78 16 36 H 0.09 2.12 5.37 -51.93 -0.28 1.84 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16 39 H 0.06 1.08 7.07 -51.93 -0.37 0.72 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 42 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 43 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.09 1.61 5.91 -51.93 -0.31 1.30 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -28.60 341.24 -8.32 -36.92 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.69 Total: 5.12 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.86 Total: -19.28 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.63 Total: -23.55 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.52 Total: -20.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.60 -8.32 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345533742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.315 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds