Wall clock time and date at job start Mon Mar 30 2020 00:49:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53006 * 109.47012 * 2 1
4 4 C 1.52995 * 109.47000 * 174.85079 * 3 2 1
5 5 H 1.09001 * 109.47646 * 304.01131 * 4 3 2
6 6 C 1.50698 * 109.47403 * 184.00923 * 4 3 2
7 7 O 1.20827 * 119.99410 * 0.02562 * 6 4 3
8 8 O 1.34225 * 120.00591 * 179.97438 * 6 4 3
9 9 C 1.45198 * 117.00201 * 180.02562 * 8 6 4
10 10 H 1.09001 * 109.47236 * 329.99957 * 9 8 6
11 11 C 1.50703 * 109.47046 * 210.00035 * 9 8 6
12 12 H 1.07997 * 120.00178 * 0.02562 * 11 9 8
13 13 C 1.37873 * 120.00114 * 179.97438 * 11 9 8
14 14 N 1.31520 * 120.00020 * 0.02562 * 13 11 9
15 15 Si 1.86802 * 120.00424 * 180.02562 * 13 11 9
16 16 H 1.48509 * 109.46763 * 0.02562 * 15 13 11
17 17 H 1.48493 * 109.47332 * 119.99863 * 15 13 11
18 18 H 1.48500 * 109.47250 * 240.00386 * 15 13 11
19 19 C 1.52996 * 109.47124 * 90.00346 * 9 8 6
20 20 C 1.52999 * 117.49960 * 231.25204 * 19 9 8
21 21 C 1.53004 * 117.49699 * 299.91167 * 19 9 8
22 22 C 1.52999 * 109.47040 * 64.01015 * 4 3 2
23 23 C 1.52999 * 109.47156 * 65.31739 * 22 4 3
24 24 C 1.53001 * 109.47150 * 185.31514 * 22 4 3
25 25 H 1.09001 * 109.46766 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.46795 * 300.00098 * 1 2 3
27 27 H 1.08999 * 109.46789 * 60.00148 * 1 2 3
28 28 H 1.09001 * 109.47517 * 240.00093 * 2 1 3
29 29 H 1.08999 * 109.46789 * 119.99852 * 2 1 3
30 30 H 1.08996 * 109.46884 * 54.85497 * 3 2 1
31 31 H 1.08999 * 109.46798 * 294.85178 * 3 2 1
32 32 H 0.96993 * 120.00291 * 180.02562 * 14 13 11
33 33 H 1.09001 * 115.55407 * 85.58451 * 19 9 8
34 34 H 1.08999 * 117.50114 * 215.00010 * 20 19 9
35 35 H 1.09002 * 117.49578 * 0.02562 * 20 19 9
36 36 H 1.08992 * 117.49895 * 359.97438 * 21 19 9
37 37 H 1.09001 * 117.49762 * 145.00066 * 21 19 9
38 38 H 1.08997 * 109.47498 * 305.31787 * 22 4 3
39 39 H 1.09002 * 109.47284 * 60.00273 * 23 22 4
40 40 H 1.08997 * 109.47410 * 180.02562 * 23 22 4
41 41 H 1.08997 * 109.47266 * 300.00199 * 23 22 4
42 42 H 1.09000 * 109.46949 * 52.91020 * 24 22 4
43 43 H 1.09009 * 109.47057 * 172.91001 * 24 22 4
44 44 H 1.09000 * 109.47556 * 292.90387 * 24 22 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4426 0.0000
4 6 3.5645 1.4445 0.1295
5 1 3.8538 0.8959 1.0258
6 6 4.0585 2.8648 0.2285
7 8 3.2718 3.7814 0.1991
8 8 5.3722 3.1116 0.3505
9 6 5.7759 4.5033 0.4412
10 1 5.0689 5.1234 -0.1100
11 6 7.1532 4.6664 -0.1484
12 1 7.6729 3.8098 -0.5514
13 6 7.7493 5.9093 -0.1742
14 7 7.1162 6.9526 0.3161
15 14 9.4562 6.1117 -0.9057
16 1 9.9479 4.7953 -1.3864
17 1 9.3972 7.0632 -2.0442
18 1 10.3801 6.6371 0.1314
19 6 5.7954 4.9340 1.9092
20 6 5.0383 6.2105 2.2811
21 6 4.4822 4.8439 2.6893
22 6 4.1816 0.7745 -1.0999
23 6 3.8866 1.6176 -2.3421
24 6 5.6953 0.6572 -0.9108
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.8935 -0.5138 -0.8900
29 1 1.8933 -0.5138 0.8900
30 1 1.6034 1.9822 0.8403
31 1 1.7539 1.9290 -0.9325
32 1 7.5353 7.8271 0.2976
33 1 6.7175 4.7203 2.4497
34 1 5.4623 6.8365 3.0662
35 1 4.5260 6.7432 1.4799
36 1 3.6045 4.4783 2.1566
37 1 4.5405 4.5710 3.7430
38 1 3.7529 -0.2197 -1.2254
39 1 4.3154 2.6119 -2.2167
40 1 4.3258 1.1401 -3.2180
41 1 2.8083 1.7012 -2.4768
42 1 5.9058 0.1658 0.0391
43 1 6.1188 0.0696 -1.7255
44 1 6.1399 1.6524 -0.9116
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001345533742.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:49:45
Heat of formation + Delta-G solvation = -96.232979 kcal
Electronic energy + Delta-G solvation = -22115.785214 eV
Core-core repulsion = 19033.022992 eV
Total energy + Delta-G solvation = -3082.762222 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.03529 -37.34821 -35.92215 -34.89952 -33.61706 -32.61063 -29.36274 -27.86605
-26.88888 -24.76028 -23.14343 -21.78576 -21.25555 -21.00869 -19.33228 -18.66463
-16.91322 -16.43192 -15.92029 -15.31415 -15.14753 -14.64735 -14.11843 -13.87995
-13.62565 -13.46100 -13.05756 -12.73810 -12.47189 -12.04036 -11.87259 -11.82597
-11.47815 -11.36422 -11.22793 -11.07033 -11.01587 -10.87336 -10.83771 -10.54075
-10.38949 -10.32264 -10.24245 -10.10159 -9.77784 -9.46436 -9.26047 -8.96901
-8.58770 -8.39973 -6.12809 -4.20310 3.10515 3.24810 3.32309 3.36072
3.69993 4.36071 4.80442 4.89920 5.00275 5.10464 5.14553 5.19354
5.22421 5.34962 5.55608 5.66538 5.72210 5.82179 5.84032 5.91481
5.96114 5.97756 6.03011 6.08959 6.18904 6.21720 6.28791 6.29574
6.36799 6.41916 6.44209 6.58593 6.61204 6.75065 6.94280 7.03704
7.19964 7.32413 7.45901 7.67732 7.90555 8.17328 8.71782 8.96383
9.44487 10.93961
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.022836 B = 0.005860 C = 0.004997
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1225.841322 B = 4777.366564 C = 5601.509701
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.124 4.124
3 C -0.106 4.106
4 C -0.081 4.081
5 H 0.098 0.902
6 C 0.461 3.539
7 O -0.522 6.522
8 O -0.346 6.346
9 C 0.246 3.754
10 H 0.046 0.954
11 C -0.524 4.524
12 H 0.069 0.931
13 C 0.069 3.931
14 N -0.873 5.873
15 Si 0.903 3.097
16 H -0.271 1.271
17 H -0.283 1.283
18 H -0.283 1.283
19 C -0.113 4.113
20 C -0.124 4.124
21 C -0.230 4.230
22 C -0.083 4.083
23 C -0.154 4.154
24 C -0.159 4.159
25 H 0.051 0.949
26 H 0.054 0.946
27 H 0.053 0.947
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.070 0.930
31 H 0.072 0.928
32 H 0.263 0.737
33 H 0.087 0.913
34 H 0.073 0.927
35 H 0.087 0.913
36 H 0.094 0.906
37 H 0.070 0.930
38 H 0.077 0.923
39 H 0.060 0.940
40 H 0.056 0.944
41 H 0.055 0.945
42 H 0.052 0.948
43 H 0.048 0.952
44 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.708 -11.981 -0.592 14.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.161 4.161
3 C -0.143 4.143
4 C -0.101 4.101
5 H 0.116 0.884
6 C 0.305 3.695
7 O -0.413 6.413
8 O -0.261 6.261
9 C 0.194 3.806
10 H 0.064 0.936
11 C -0.562 4.562
12 H 0.087 0.913
13 C -0.135 4.135
14 N -0.509 5.509
15 Si 0.731 3.269
16 H -0.195 1.195
17 H -0.209 1.209
18 H -0.209 1.209
19 C -0.132 4.132
20 C -0.161 4.161
21 C -0.267 4.267
22 C -0.101 4.101
23 C -0.211 4.211
24 C -0.216 4.216
25 H 0.070 0.930
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.088 0.912
31 H 0.091 0.909
32 H 0.072 0.928
33 H 0.105 0.895
34 H 0.091 0.909
35 H 0.106 0.894
36 H 0.112 0.888
37 H 0.088 0.912
38 H 0.096 0.904
39 H 0.080 0.920
40 H 0.075 0.925
41 H 0.074 0.926
42 H 0.071 0.929
43 H 0.067 0.933
44 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -7.870 -11.463 -0.566 13.916
hybrid contribution 0.941 0.482 -0.154 1.069
sum -6.929 -10.980 -0.721 13.004
Atomic orbital electron populations
1.21763 0.95938 1.01233 1.01954 1.21583 0.95747 0.96751 1.02064
1.21520 0.92560 0.96593 1.03662 1.21213 0.96286 0.91697 1.00866
0.88355 1.23251 0.82476 0.91454 0.72362 1.90558 1.56916 1.46976
1.46808 1.86528 1.23383 1.35364 1.80867 1.20170 0.96039 0.73385
0.91051 0.93613 1.20940 1.00036 0.94736 1.40478 0.91320 1.24874
0.98164 0.95401 0.95103 1.70060 1.37389 0.99475 1.43989 0.86355
0.83509 0.78303 0.78770 1.19534 1.20887 1.20871 1.22595 0.92598
1.01202 0.96830 1.22355 1.02664 0.89622 1.01501 1.23282 0.99976
1.04207 0.99232 1.21065 0.96930 0.98767 0.93342 1.21960 1.01350
1.00675 0.97152 1.22063 0.94336 1.04494 1.00696 0.92983 0.92733
0.92750 0.91708 0.92022 0.91174 0.90889 0.92767 0.89473 0.90891
0.89405 0.88808 0.91170 0.90440 0.92048 0.92524 0.92600 0.92859
0.93324 0.89361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16
2 C -0.12 -1.26 5.54 -26.73 -0.15 -1.41 16
3 C -0.11 -1.40 3.87 -26.73 -0.10 -1.50 16
4 C -0.08 -1.22 2.11 -91.78 -0.19 -1.41 16
5 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16
6 C 0.46 9.28 4.94 36.00 0.18 9.46 16
7 O -0.52 -11.83 12.98 -18.75 -0.24 -12.07 16
8 O -0.35 -7.84 7.13 -39.25 -0.28 -8.12 16
9 C 0.25 6.38 2.25 -27.88 -0.06 6.32 16
10 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16
11 C -0.52 -14.30 8.88 -34.44 -0.31 -14.61 16
12 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16
13 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16
14 N -0.87 -24.19 11.43 55.43 0.63 -23.55 16
15 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16
16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
19 C -0.11 -2.79 4.47 -90.62 -0.41 -3.19 16
20 C -0.12 -2.90 9.04 -26.69 -0.24 -3.14 16
21 C -0.23 -5.02 9.80 -26.69 -0.26 -5.28 16
22 C -0.08 -1.12 2.55 -90.62 -0.23 -1.35 16
23 C -0.15 -2.21 8.63 37.16 0.32 -1.89 16
24 C -0.16 -2.33 8.61 37.16 0.32 -2.01 16
25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
28 H 0.06 0.61 6.68 -51.93 -0.35 0.26 16
29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16
31 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16
32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
33 H 0.09 2.21 8.11 -51.93 -0.42 1.79 16
34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16
35 H 0.09 2.20 8.05 -51.93 -0.42 1.78 16
36 H 0.09 2.12 5.37 -51.93 -0.28 1.84 16
37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16
38 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16
39 H 0.06 1.08 7.07 -51.93 -0.37 0.72 16
40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16
42 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16
43 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16
44 H 0.09 1.61 5.91 -51.93 -0.31 1.30 16
LS Contribution 341.24 15.07 5.14 5.14
Total: -1.00 -28.60 341.24 -8.32 -36.92
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: -7.69 Total: 5.12 kcal
Atomic # 6 Polarization: -18.42 SS G_CDS: -0.86 Total: -19.28 kcal
Atomic # 7 Polarization: -24.19 SS G_CDS: 0.63 Total: -23.55 kcal
Atomic # 8 Polarization: -19.67 SS G_CDS: -0.52 Total: -20.19 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -28.60 -8.32 -36.92 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001345533742.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.315 kcal
(2) G-P(sol) polarization free energy of solvation -28.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds