Wall clock time and date at job start Mon Mar 30 2020 00:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 C 1.52995 * 109.47000 * 174.85079 * 3 2 1 5 5 H 1.09001 * 109.47646 * 304.01131 * 4 3 2 6 6 C 1.50698 * 109.47403 * 184.00923 * 4 3 2 7 7 O 1.20827 * 119.99410 * 0.02562 * 6 4 3 8 8 O 1.34225 * 120.00591 * 179.97438 * 6 4 3 9 9 C 1.45198 * 117.00201 * 180.02562 * 8 6 4 10 10 H 1.09001 * 109.47236 * 329.99957 * 9 8 6 11 11 C 1.50703 * 109.47046 * 210.00035 * 9 8 6 12 12 H 1.07997 * 120.00178 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00114 * 179.97438 * 11 9 8 14 14 N 1.31520 * 120.00020 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00424 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46763 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47332 * 119.99863 * 15 13 11 18 18 H 1.48500 * 109.47250 * 240.00386 * 15 13 11 19 19 C 1.52996 * 109.47124 * 90.00346 * 9 8 6 20 20 C 1.52999 * 117.49960 * 231.25204 * 19 9 8 21 21 C 1.53004 * 117.49699 * 299.91167 * 19 9 8 22 22 C 1.52999 * 109.47040 * 64.01015 * 4 3 2 23 23 C 1.52999 * 109.47156 * 65.31739 * 22 4 3 24 24 C 1.53001 * 109.47150 * 185.31514 * 22 4 3 25 25 H 1.09001 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46795 * 300.00098 * 1 2 3 27 27 H 1.08999 * 109.46789 * 60.00148 * 1 2 3 28 28 H 1.09001 * 109.47517 * 240.00093 * 2 1 3 29 29 H 1.08999 * 109.46789 * 119.99852 * 2 1 3 30 30 H 1.08996 * 109.46884 * 54.85497 * 3 2 1 31 31 H 1.08999 * 109.46798 * 294.85178 * 3 2 1 32 32 H 0.96993 * 120.00291 * 180.02562 * 14 13 11 33 33 H 1.09001 * 115.55407 * 85.58451 * 19 9 8 34 34 H 1.08999 * 117.50114 * 215.00010 * 20 19 9 35 35 H 1.09002 * 117.49578 * 0.02562 * 20 19 9 36 36 H 1.08992 * 117.49895 * 359.97438 * 21 19 9 37 37 H 1.09001 * 117.49762 * 145.00066 * 21 19 9 38 38 H 1.08997 * 109.47498 * 305.31787 * 22 4 3 39 39 H 1.09002 * 109.47284 * 60.00273 * 23 22 4 40 40 H 1.08997 * 109.47410 * 180.02562 * 23 22 4 41 41 H 1.08997 * 109.47266 * 300.00199 * 23 22 4 42 42 H 1.09000 * 109.46949 * 52.91020 * 24 22 4 43 43 H 1.09009 * 109.47057 * 172.91001 * 24 22 4 44 44 H 1.09000 * 109.47556 * 292.90387 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5645 1.4445 0.1295 5 1 3.8538 0.8959 1.0258 6 6 4.0585 2.8648 0.2285 7 8 3.2718 3.7814 0.1991 8 8 5.3722 3.1116 0.3505 9 6 5.7759 4.5033 0.4412 10 1 5.0689 5.1234 -0.1100 11 6 7.1532 4.6664 -0.1484 12 1 7.6729 3.8098 -0.5514 13 6 7.7493 5.9093 -0.1742 14 7 7.1162 6.9526 0.3161 15 14 9.4562 6.1117 -0.9057 16 1 9.9479 4.7953 -1.3864 17 1 9.3972 7.0632 -2.0442 18 1 10.3801 6.6371 0.1314 19 6 5.7954 4.9340 1.9092 20 6 5.0383 6.2105 2.2811 21 6 4.4822 4.8439 2.6893 22 6 4.1816 0.7745 -1.0999 23 6 3.8866 1.6176 -2.3421 24 6 5.6953 0.6572 -0.9108 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6034 1.9822 0.8403 31 1 1.7539 1.9290 -0.9325 32 1 7.5353 7.8271 0.2976 33 1 6.7175 4.7203 2.4497 34 1 5.4623 6.8365 3.0662 35 1 4.5260 6.7432 1.4799 36 1 3.6045 4.4783 2.1566 37 1 4.5405 4.5710 3.7430 38 1 3.7529 -0.2197 -1.2254 39 1 4.3154 2.6119 -2.2167 40 1 4.3258 1.1401 -3.2180 41 1 2.8083 1.7012 -2.4768 42 1 5.9058 0.1658 0.0391 43 1 6.1188 0.0696 -1.7255 44 1 6.1399 1.6524 -0.9116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345533742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:45 Heat of formation + Delta-G solvation = -109.328021 kcal Electronic energy + Delta-G solvation = -22116.353058 eV Core-core repulsion = 19033.022992 eV Total energy + Delta-G solvation = -3083.330066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65203 -38.85955 -37.53286 -36.68536 -34.72084 -34.55113 -30.55911 -29.74941 -28.08944 -26.08019 -24.96868 -23.11260 -22.91929 -22.34245 -21.16958 -20.11188 -18.73787 -18.20647 -17.47299 -16.96635 -16.54374 -16.20470 -15.70574 -15.35783 -14.90461 -14.66206 -14.44354 -14.23781 -13.85391 -13.51495 -13.40313 -13.01768 -12.98426 -12.86699 -12.78631 -12.70908 -12.39563 -12.26131 -12.17220 -11.94742 -11.80007 -11.75855 -11.69174 -11.42660 -11.29642 -11.20647 -11.01940 -10.85021 -10.54124 -10.41540 -8.20393 -6.36392 1.40970 1.41607 1.49061 1.54564 2.08947 2.44593 3.06993 3.22601 3.70063 3.78798 3.89320 4.09600 4.16407 4.20178 4.30305 4.34450 4.37841 4.45026 4.60458 4.63683 4.69432 4.78428 4.81637 4.86493 4.91938 5.01109 5.07488 5.09811 5.10637 5.12837 5.23422 5.27906 5.28817 5.38805 5.40876 5.43190 5.50063 5.56793 5.57799 5.72660 5.91020 6.23512 6.68476 7.12196 7.34616 8.86121 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.005860 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.841322 B = 4777.366564 C = 5601.509701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.101 4.101 4 C -0.075 4.075 5 H 0.119 0.881 6 C 0.454 3.546 7 O -0.553 6.553 8 O -0.349 6.349 9 C 0.253 3.747 10 H 0.001 0.999 11 C -0.548 4.548 12 H 0.063 0.937 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.970 3.030 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.275 1.275 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.200 4.200 22 C -0.076 4.076 23 C -0.153 4.153 24 C -0.158 4.158 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.015 0.985 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -14.429 -0.380 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.138 4.138 4 C -0.094 4.094 5 H 0.137 0.863 6 C 0.299 3.701 7 O -0.446 6.446 8 O -0.264 6.264 9 C 0.200 3.800 10 H 0.018 0.982 11 C -0.585 4.585 12 H 0.081 0.919 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.795 3.205 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.200 1.200 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.237 4.237 22 C -0.094 4.094 23 C -0.210 4.210 24 C -0.215 4.215 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.034 0.966 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.896 -13.928 -0.352 16.014 hybrid contribution 0.879 1.246 -0.255 1.546 sum -7.017 -12.682 -0.607 14.507 Atomic orbital electron populations 1.21770 0.95291 1.02292 1.01610 1.21563 0.96275 0.94168 1.03415 1.21509 0.91050 0.98904 1.02371 1.21436 0.97413 0.87920 1.02641 0.86320 1.24437 0.81171 0.93592 0.70866 1.90537 1.57256 1.48624 1.48140 1.86555 1.25288 1.33272 1.81333 1.19750 0.94393 0.74515 0.91355 0.98153 1.21187 1.00828 0.95088 1.41405 0.91857 1.25695 1.01917 0.94885 0.95224 1.70175 1.38861 0.99812 1.44459 0.85324 0.78776 0.78356 0.78079 1.18949 1.20472 1.20005 1.22426 0.93525 1.02631 0.96328 1.22264 1.02687 0.89987 1.01239 1.23264 0.97848 1.02159 1.00408 1.21133 0.96275 1.00227 0.91797 1.21957 1.01840 0.98538 0.98668 1.22027 0.94975 1.02301 1.02180 0.91180 0.93246 0.93073 0.90182 0.90726 0.92713 0.92154 0.92563 0.90293 0.89366 0.91931 0.89682 0.87897 0.86227 0.96609 0.90552 0.91580 0.91801 0.91319 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.12 -1.98 5.54 30.60 0.17 -1.81 16 3 C -0.10 -2.53 3.87 30.59 0.12 -2.41 16 4 C -0.08 -2.15 2.11 -11.54 -0.02 -2.18 16 5 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 6 C 0.45 18.79 4.94 71.24 0.35 19.14 16 7 O -0.55 -26.30 12.98 21.96 0.29 -26.01 16 8 O -0.35 -16.46 7.13 -51.37 -0.37 -16.83 16 9 C 0.25 13.80 2.25 29.85 0.07 13.87 16 10 H 0.00 0.05 6.91 -2.39 -0.02 0.03 16 11 C -0.55 -31.05 8.88 25.60 0.23 -30.82 16 12 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 13 C 0.02 1.35 5.30 84.65 0.45 1.80 16 14 N -0.90 -51.03 11.43 21.45 0.25 -50.78 16 15 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 C -0.13 -6.57 4.47 -10.79 -0.05 -6.62 16 20 C -0.12 -5.95 9.04 30.62 0.28 -5.68 16 21 C -0.20 -8.72 9.80 30.62 0.30 -8.42 16 22 C -0.08 -1.89 2.55 -10.79 -0.03 -1.92 16 23 C -0.15 -4.28 8.63 71.98 0.62 -3.66 16 24 C -0.16 -4.39 8.61 71.98 0.62 -3.77 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.14 6.68 -2.39 -0.02 1.13 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.53 7.99 -2.39 -0.02 1.52 16 31 H 0.06 1.66 6.40 -2.39 -0.02 1.64 16 32 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.08 4.09 8.11 -2.39 -0.02 4.07 16 34 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 35 H 0.06 3.29 8.05 -2.39 -0.02 3.27 16 36 H 0.08 3.89 5.37 -2.39 -0.01 3.88 16 37 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 38 H 0.12 2.08 6.40 -2.39 -0.02 2.07 16 39 H 0.01 0.56 7.07 -2.39 -0.02 0.54 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.68 6.49 -2.39 -0.02 1.67 16 42 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 43 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.04 1.67 5.91 -2.39 -0.01 1.65 16 Total: -1.00 -65.28 341.24 6.96 -58.32 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.95 Total: 24.15 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.81 Total: -34.16 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.25 Total: -50.78 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.08 Total: -42.84 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.28 6.96 -58.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345533742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.010 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds