Wall clock time and date at job start Mon Mar 30 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46836 * 2 1 4 4 C 1.53000 * 109.46946 * 174.71915 * 3 2 1 5 5 H 1.09005 * 109.47163 * 304.12081 * 4 3 2 6 6 C 1.50704 * 109.47202 * 184.12393 * 4 3 2 7 7 O 1.20830 * 119.99879 * 0.02562 * 6 4 3 8 8 O 1.34218 * 120.00248 * 180.02562 * 6 4 3 9 9 C 1.45196 * 117.00385 * 179.97438 * 8 6 4 10 10 H 1.09008 * 109.47026 * 30.00307 * 9 8 6 11 11 C 1.50707 * 109.47353 * 149.99789 * 9 8 6 12 12 H 1.07997 * 119.99708 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99972 * 180.02562 * 11 9 8 14 14 N 1.31523 * 120.00292 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00141 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47189 * 90.00173 * 15 13 11 17 17 H 1.48496 * 109.47306 * 210.00186 * 15 13 11 18 18 H 1.48503 * 109.46715 * 330.00195 * 15 13 11 19 19 C 1.53000 * 109.47579 * 270.00091 * 9 8 6 20 20 C 1.52999 * 117.50072 * 128.74008 * 19 9 8 21 21 C 1.53004 * 117.49682 * 60.08316 * 19 9 8 22 22 C 1.52998 * 109.47089 * 64.12499 * 4 3 2 23 23 C 1.52996 * 109.47114 * 65.10935 * 22 4 3 24 24 C 1.53001 * 109.47105 * 185.10765 * 22 4 3 25 25 H 1.09001 * 109.47482 * 299.99928 * 1 2 3 26 26 H 1.08999 * 109.46867 * 60.00072 * 1 2 3 27 27 H 1.08998 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47267 * 240.00280 * 2 1 3 29 29 H 1.08997 * 109.47275 * 119.99610 * 2 1 3 30 30 H 1.09002 * 109.47264 * 54.72155 * 3 2 1 31 31 H 1.09001 * 109.47244 * 294.71862 * 3 2 1 32 32 H 0.96995 * 119.99818 * 179.97438 * 14 13 11 33 33 H 1.08996 * 115.54830 * 274.41461 * 19 9 8 34 34 H 1.09004 * 117.49868 * 0.02562 * 20 19 9 35 35 H 1.09001 * 117.50185 * 145.02004 * 20 19 9 36 36 H 1.08995 * 117.49985 * 214.97906 * 21 19 9 37 37 H 1.09006 * 117.49360 * 359.97438 * 21 19 9 38 38 H 1.08995 * 109.46856 * 305.10488 * 22 4 3 39 39 H 1.09002 * 109.46668 * 180.02562 * 23 22 4 40 40 H 1.09001 * 109.47233 * 299.99381 * 23 22 4 41 41 H 1.08995 * 109.47624 * 60.00023 * 23 22 4 42 42 H 1.09009 * 109.47158 * 52.90451 * 24 22 4 43 43 H 1.09002 * 109.47078 * 172.90184 * 24 22 4 44 44 H 1.09000 * 109.47340 * 292.90871 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4446 0.1328 5 1 3.8516 0.8950 1.0292 6 6 4.0577 2.8649 0.2346 7 8 3.2709 3.7815 0.2046 8 8 5.3711 3.1118 0.3587 9 6 5.7745 4.5036 0.4510 10 1 4.9795 5.0818 0.9221 11 6 7.0300 4.6090 1.2779 12 1 7.4799 3.7190 1.6922 13 6 7.6041 5.8417 1.5054 14 7 7.0558 6.9257 1.0013 15 14 9.1607 5.9724 2.5298 16 1 10.3471 5.8602 1.6439 17 1 9.1858 7.2832 3.2272 18 1 9.1865 4.8775 3.5328 19 6 6.0406 5.0517 -0.9525 20 6 5.3488 6.3591 -1.3433 21 6 4.8803 5.0340 -1.9496 22 6 4.1841 0.7763 -1.0960 23 6 3.8872 1.6181 -2.3386 24 6 5.6980 0.6637 -0.9061 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6015 1.9830 0.8389 31 1 1.7559 1.9284 -0.9335 32 1 7.4595 7.7929 1.1617 33 1 7.0428 4.8762 -1.3434 34 1 4.7043 6.8291 -0.6004 35 1 5.8957 7.0438 -1.9916 36 1 5.1191 4.8474 -2.9965 37 1 3.9274 4.6315 -1.6057 38 1 3.7586 -0.2193 -1.2214 39 1 4.3285 1.1416 -3.2141 40 1 2.8086 1.6983 -2.4740 41 1 4.3127 2.6137 -2.2132 42 1 5.9096 0.1733 0.0442 43 1 6.1238 0.0772 -1.7203 44 1 6.1395 1.6603 -0.9067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345533743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:48 Heat of formation + Delta-G solvation = -95.916123 kcal Electronic energy + Delta-G solvation = -22241.515541 eV Core-core repulsion = 19158.767059 eV Total energy + Delta-G solvation = -3082.748482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06479 -37.29658 -35.98396 -34.87242 -33.65858 -32.60097 -29.35287 -27.86269 -26.92980 -24.76939 -23.13599 -21.81141 -21.23936 -21.03599 -19.35968 -18.65366 -16.80352 -16.42409 -16.21558 -15.27156 -14.96956 -14.51251 -14.34136 -13.81545 -13.67248 -13.47581 -13.01301 -12.74029 -12.47628 -12.05197 -11.96363 -11.84834 -11.45419 -11.34991 -11.21921 -11.06419 -10.97549 -10.94361 -10.80133 -10.52712 -10.39708 -10.33671 -10.22823 -10.14401 -9.74604 -9.48137 -9.23183 -8.98421 -8.60676 -8.38806 -6.12594 -4.20198 3.10006 3.26155 3.32232 3.35176 3.69974 4.36378 4.80136 4.89885 4.98396 5.10347 5.13388 5.18391 5.23318 5.35852 5.54616 5.65967 5.71864 5.82956 5.83762 5.91017 5.94885 5.97396 6.01622 6.08374 6.17246 6.20923 6.27670 6.28268 6.36205 6.39987 6.48287 6.57252 6.62243 6.73553 6.90718 7.03456 7.20051 7.32257 7.45548 7.67559 7.90580 8.17371 8.71619 8.96123 9.44593 10.94069 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.005470 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.266993 B = 5117.672143 C = 5345.215050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.082 4.082 5 H 0.099 0.901 6 C 0.461 3.539 7 O -0.522 6.522 8 O -0.345 6.345 9 C 0.246 3.754 10 H 0.046 0.954 11 C -0.526 4.526 12 H 0.068 0.932 13 C 0.069 3.931 14 N -0.873 5.873 15 Si 0.905 3.095 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.229 4.229 22 C -0.082 4.082 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 -11.756 -4.425 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.143 4.143 4 C -0.101 4.101 5 H 0.117 0.883 6 C 0.304 3.696 7 O -0.413 6.413 8 O -0.261 6.261 9 C 0.193 3.807 10 H 0.064 0.936 11 C -0.564 4.564 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.509 5.509 15 Si 0.732 3.268 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.130 4.130 20 C -0.162 4.162 21 C -0.266 4.266 22 C -0.100 4.100 23 C -0.218 4.218 24 C -0.215 4.215 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.531 -11.231 -4.436 14.231 hybrid contribution 0.892 0.429 0.472 1.097 sum -6.639 -10.802 -3.963 13.284 Atomic orbital electron populations 1.21762 0.95938 1.01233 1.01954 1.21580 0.95747 0.96749 1.02065 1.21523 0.92559 0.96602 1.03654 1.21217 0.96296 0.91713 1.00892 0.88323 1.23260 0.82456 0.91459 0.72410 1.90558 1.56978 1.46998 1.46738 1.86528 1.23426 1.35340 1.80834 1.20167 0.95939 0.73156 0.91399 0.93635 1.20913 1.09265 0.93746 1.32466 0.91389 1.24872 0.97649 0.95268 0.95725 1.70051 1.39305 0.98135 1.43431 0.86395 0.82752 0.77510 0.80175 1.20497 1.21098 1.19720 1.22573 0.94480 1.00753 0.95238 1.22361 1.02633 0.89816 1.01408 1.23306 1.00893 1.04954 0.97472 1.21050 0.96839 0.98779 0.93341 1.22073 1.01420 1.01227 0.97062 1.22045 0.94369 1.04288 1.00754 0.92727 0.92755 0.92985 0.91728 0.92002 0.91145 0.90907 0.92710 0.89505 0.89417 0.90908 0.91176 0.88608 0.90479 0.92682 0.92654 0.91284 0.92773 0.93360 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.26 5.54 -26.73 -0.15 -1.41 16 3 C -0.11 -1.40 3.87 -26.73 -0.10 -1.51 16 4 C -0.08 -1.23 2.11 -91.77 -0.19 -1.42 16 5 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 6 C 0.46 9.28 4.95 36.01 0.18 9.46 16 7 O -0.52 -11.83 12.98 -18.75 -0.24 -12.08 16 8 O -0.35 -7.84 7.12 -39.23 -0.28 -8.12 16 9 C 0.25 6.38 2.25 -27.88 -0.06 6.32 16 10 H 0.05 1.33 6.91 -51.92 -0.36 0.97 16 11 C -0.53 -14.47 8.88 -34.44 -0.31 -14.77 16 12 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 13 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 14 N -0.87 -24.21 11.43 55.43 0.63 -23.58 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.11 -2.70 4.47 -90.62 -0.41 -3.11 16 20 C -0.12 -2.89 9.04 -26.70 -0.24 -3.13 16 21 C -0.23 -4.88 8.34 -26.69 -0.22 -5.10 16 22 C -0.08 -1.08 2.55 -90.62 -0.23 -1.31 16 23 C -0.16 -2.23 8.63 37.16 0.32 -1.91 16 24 C -0.16 -2.26 8.60 37.16 0.32 -1.94 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.61 6.69 -51.93 -0.35 0.26 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 31 H 0.07 1.01 6.38 -51.93 -0.33 0.68 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 33 H 0.09 2.18 8.11 -51.93 -0.42 1.75 16 34 H 0.09 2.18 8.05 -51.93 -0.42 1.76 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 2.11 4.89 -51.93 -0.25 1.86 16 38 H 0.08 0.85 6.42 -51.93 -0.33 0.51 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.71 6.48 -51.93 -0.34 0.38 16 41 H 0.07 1.15 4.96 -51.93 -0.26 0.90 16 42 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.51 5.91 -51.93 -0.31 1.21 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -28.60 337.18 -8.20 -36.81 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.55 Total: 5.07 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.82 Total: -19.09 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.52 Total: -20.20 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.60 -8.20 -36.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345533743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.108 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds